diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..ff2a359
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,2 @@
+.idea
+__pycache__/*
\ No newline at end of file
diff --git a/MetaCycPWanalysis/.gitignore b/MetaCycPWanalysis/.gitignore
new file mode 100644
index 0000000..a390966
--- /dev/null
+++ b/MetaCycPWanalysis/.gitignore
@@ -0,0 +1,3 @@
+.idea
+__pycache__/*
+plots
\ No newline at end of file