diff --git a/examples/USER/quip/in.molecular b/examples/USER/quip/in.molecular index ddec99795..5af564751 100644 --- a/examples/USER/quip/in.molecular +++ b/examples/USER/quip/in.molecular @@ -1,38 +1,42 @@ units metal atom_style full boundary p p p processors 1 1 1 timestep 0.0001 # 0.1 fs read_data methane-box-8.data pair_style hybrid/overlay lj/cut 8.0 quip -special_bonds lj/coul 0.999999999 0.999999999 0.999999999 # for quip + +# exclusion setting for quip; cannot be exactly 1.0 1.0 1.0, +# since that would not flag 1-2, 1-3, and 1-4 pairs in lj/cut +special_bonds lj/coul 0.999999999 0.999999999 0.999999999 # Intermolecular: OPLS (JACS 118 (45), p. 11225 (1996)) pair_coeff 1 1 lj/cut 0.0028619844 3.5 # CT pair_coeff 2 2 lj/cut 0.0013009018 2.5 # HC pair_coeff 1 2 lj/cut 0.0019295487 2.95 pair_modify shift no +# change exclusion settings for lj/cut only: exclude bonded pairs pair_modify pair lj/cut special lj/coul 0.0 0.0 0.0 # Intramolecular # Tell QUIP to pretend this is silane (which is covered by the parameter file) pair_coeff * * quip ip.parms.SW.xml "IP SW" 14 1 bond_style none angle_style none fix 1 all nve # Include diagnostics that allow us to compare to a pure QUIP run compute equip all pair quip compute evdw all pair lj/cut compute vir all pressure NULL virial thermo_style custom step epair ke etotal temp press c_vir c_evdw c_equip thermo 1 -dump 1 all custom 1 dump.molecular id type x y z fx fy fz -dump_modify 1 sort id +# dump 1 all custom 1 dump.molecular id type x y z fx fy fz +# dump_modify 1 sort id run 10