Diffusion lammps 83988a1026f4

Merge branch 'master' into USER-DPD_kokkos as of patch 21Feb17
83988a1026f4
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Authored by Tim Mattox <timothy.mattox@engilitycorp.com> on Feb 22 2017, 17:29.

Description

Merge branch 'master' into USER-DPD_kokkos as of patch 21Feb17

Details

Committed

Tim Mattox <timothy.mattox@engilitycorp.com>

Feb 22 2017, 17:29

Pushed

junge

Oct 19 2017, 09:53

Parents

rLAMMPSdc16228a602d: Merge branch 'USER-DPD_ssa_update' into USER-DPD_kokkos
rLAMMPS49e83b434800: patch 21Feb17 sync with GHub

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Event Timeline

Tim Mattox <timothy.mattox@engilitycorp.com> committed rLAMMPS83988a1026f4: Merge branch 'master' into USER-DPD_kokkos as of patch 21Feb17 (authored by Tim Mattox <timothy.mattox@engilitycorp.com>).Feb 22 2017, 17:29

Merged Changes

Commit	Author	Details	Committed
49e83b434800	Steve Plimpton	patch 21Feb17 sync with GHub	Feb 22 2017
6e89ccd522f5	sjplimp/GitHub	Merge pull request #385 from akohlmey/collected-small-bugfixes	Feb 21 2017
53f3df5bfc94	sjplimp/GitHub	Merge pull request #384 from lammps/another_neigh_refactor	Feb 21 2017
3dbbea342a3b	Steve Plimpton	remove a debug print line	Feb 21 2017
b70c670aac56	sjplimp/GitHub	Merge pull request #383 from stanmoore1/rshan_class2_kk	Feb 21 2017
1d17cae407ff	sjplimp/GitHub	Merge pull request #382 from timattox/master_kokkos_neigh_bugfix	Feb 21 2017
429264a12bac	sjplimp/GitHub	Merge pull request #380 from hheenen/core_shell_documentation	Feb 21 2017
d001a093455b	sjplimp/GitHub	Merge pull request #379 from ndtrung81/pppm-gpu-compute-group-group	Feb 21 2017
cb9d42da0896	sjplimp/GitHub	Merge pull request #378 from timattox/USER-DPD_ssa_update	Feb 21 2017
7185ec92b3f0	sjplimp/GitHub	Merge pull request #377 from stanmoore1/kokkos_update	Feb 21 2017
1cd4c48cccdb	Steve Plimpton	new SNAP potential for W	Feb 21 2017
a88136c3f50d	Axel Kohlmeyer	correct a logic bug in fix wall/gran/region	Feb 17 2017
ce20c7ffe911	Axel Kohlmeyer	remove debug code	Feb 17 2017
4a80df3a99b8	Steve Plimpton	more neighbor list changes, some new options	Feb 16 2017
5f93fad012d8	Stan Moore	Add copymode protection to class2 styles	Feb 15 2017
ccaec315db31	Stan Moore	Updating docs for Kokkos class2	Feb 15 2017
c6c1852b3b1a	Stan Moore	Fix a few issues with Kokkos class2 files	Feb 15 2017
69a8e19dc5eb	Stan Moore	Add files from Ray Shan for Kokkos version of class2 angle, bond, etc.	Feb 15 2017
928947dcea24	Tim Mattox	neighbor_kokkos.cpp: Don't call grow() on neighbor lists that are copies. This…	Feb 15 2017
48070011d9b7	Axel Kohlmeyer/GitHub	update names in example, too	Feb 14 2017
0fb8dacc00f8	Axel Kohlmeyer/GitHub	one more Finchham to Fincham change	Feb 14 2017
6b923476b96c	Hendrik Heenen	updated documentation and examples for coreshell	Feb 14 2017
20806dd86acf	Trung Nguyen	Fixed bugs with pppm/gpu when used with compute group/group	Feb 14 2017
90e5ae965d7f	Stan Moore	Add missing flags to Kokkos Makefile	Feb 13 2017
33af7ab24874	Stan Moore	Remove merge line	Feb 13 2017
8f9b2aca06e7	Stan Moore	Removing unused files in Kokkos lib	Feb 13 2017
383da816c221	Stan Moore	Updating Kokkos lib	Feb 13 2017

Changes (315)

				Path
	M			doc/src/Manual.txt
	M			doc/src/Section_commands.txt
	M			doc/src/Section_howto.txt
	M			doc/src/angle_class2.txt
	M			doc/src/bond_class2.txt
	M			doc/src/compute_rdf.txt
	M			doc/src/dihedral_class2.txt
	M			doc/src/improper_class2.txt
	P			examples/coreshell/in.coreshell Copied to examples/coreshell/in.coreshell.thermostats
	P			examples/coreshell/in.coreshell.thermostats Copied from examples/coreshell/in.coreshell
	A			examples/snap/He_He_JW2013.table
	A			examples/snap/W.SNAP_HePair.pot
	A			examples/snap/W_2940_2017_2.pot.snap
	A			examples/snap/W_2940_2017_2.snapcoeff
	A			examples/snap/W_2940_2017_2.snapparam
	A			examples/snap/W_He_JW2013.table
	P			examples/snap/in.snap Deleted after being copied to multiple locations: examples/snap/in.snap.Ta06A examples/snap/in.snap.W.2940 examples/snap/in.snap.hybrid.WSNAP.HePair
	P			examples/snap/in.snap.Ta06A Copied from examples/snap/in.snap
	P			examples/snap/in.snap.W.2940 Copied from examples/snap/in.snap
	V			examples/snap/{in.snap.hybrid.WSNAP.HePair ← in.snap}
	A			examples/snap/log.21Feb17.snap.W.2940.g++.1
	A			examples/snap/log.21Feb17.snap.W.2940.g++.4
	A			examples/snap/log.21Feb17.snap.hybrid.WSNAP.HePair.g++.1
	A			examples/snap/log.21Feb17.snap.hybrid.WSNAP.HePair.g++.4
	V			examples/snap/{log.5Oct16.snap.Ta06A.g++.1 ← log.5Oct16.snap.g++.1}
	V			examples/snap/{log.5Oct16.snap.Ta06A.g++.4 ← log.5Oct16.snap.g++.4}
	V			examples/snap/{log.5Oct16.snap.g++.1 → log.5Oct16.snap.Ta06A.g++.1}
	V			examples/snap/{log.5Oct16.snap.g++.4 → log.5Oct16.snap.Ta06A.g++.4}
	M			lib/kokkos/CHANGELOG.md
	M			lib/kokkos/CMakeLists.txt
	P			lib/kokkos/LICENSE Copied to lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_s.cpp
	M			lib/kokkos/Makefile.kokkos
	M			lib/kokkos/README
	M			lib/kokkos/algorithms/src/Kokkos_Random.hpp
	M			lib/kokkos/algorithms/unit_tests/TestCuda.cpp
	M			lib/kokkos/algorithms/unit_tests/TestOpenMP.cpp
	M			lib/kokkos/algorithms/unit_tests/TestSerial.cpp
	M			lib/kokkos/algorithms/unit_tests/TestThreads.cpp
	M			lib/kokkos/cmake/tribits.cmake
	M			lib/kokkos/config/master_history.txt
	M			lib/kokkos/config/test_all_sandia
	A			lib/kokkos/config/test_kokkos_master_develop_promotion.sh
	M			lib/kokkos/config/trilinos-integration/prepare_trilinos_repos.sh
	M			lib/kokkos/containers/performance_tests/TestCuda.cpp
	M			lib/kokkos/containers/performance_tests/TestUnorderedMapPerformance.hpp
	M			lib/kokkos/containers/src/Kokkos_DynRankView.hpp
	M			lib/kokkos/containers/src/Kokkos_StaticCrsGraph.hpp
	M			lib/kokkos/containers/src/Kokkos_Vector.hpp
	M			lib/kokkos/containers/src/impl/Kokkos_Functional_impl.hpp
	M			lib/kokkos/containers/src/impl/Kokkos_StaticCrsGraph_factory.hpp
	M			lib/kokkos/containers/unit_tests/TestCuda.cpp
	M			lib/kokkos/containers/unit_tests/TestDynViewAPI.hpp
	M			lib/kokkos/containers/unit_tests/TestErrorReporter.hpp
	M			lib/kokkos/containers/unit_tests/TestOpenMP.cpp
	M			lib/kokkos/containers/unit_tests/TestSerial.cpp
	M			lib/kokkos/containers/unit_tests/TestStaticCrsGraph.hpp
	M			lib/kokkos/containers/unit_tests/TestThreads.cpp
	M			lib/kokkos/core/perf_test/PerfTestCuda.cpp
	M			lib/kokkos/core/perf_test/PerfTestDriver.hpp
	M			lib/kokkos/core/perf_test/PerfTestHost.cpp
	M			lib/kokkos/core/src/Cuda/Kokkos_CudaExec.hpp
	M			lib/kokkos/core/src/Cuda/Kokkos_CudaSpace.cpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_Alloc.hpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_Error.hpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_Impl.cpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_Internal.hpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_Parallel.hpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_ReduceScan.hpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_Task.cpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_Vectorization.hpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_View.hpp
	M			lib/kokkos/core/src/Cuda/Kokkos_Cuda_abort.hpp
	M			lib/kokkos/core/src/KokkosExp_MDRangePolicy.hpp
	M			lib/kokkos/core/src/Kokkos_Array.hpp
	M			lib/kokkos/core/src/Kokkos_Atomic.hpp
	M			lib/kokkos/core/src/Kokkos_Concepts.hpp
	M			lib/kokkos/core/src/Kokkos_Core.hpp
	M			lib/kokkos/core/src/Kokkos_Core_fwd.hpp
	M			lib/kokkos/core/src/Kokkos_Cuda.hpp
	M			lib/kokkos/core/src/Kokkos_CudaSpace.hpp
	M			lib/kokkos/core/src/Kokkos_HBWSpace.hpp
	M			lib/kokkos/core/src/Kokkos_HostSpace.hpp
	M			lib/kokkos/core/src/Kokkos_Macros.hpp
	M			lib/kokkos/core/src/Kokkos_MemoryPool.hpp
	M			lib/kokkos/core/src/Kokkos_OpenMP.hpp
	M			lib/kokkos/core/src/Kokkos_Parallel.hpp
	M			lib/kokkos/core/src/Kokkos_Parallel_Reduce.hpp
	M			lib/kokkos/core/src/Kokkos_ScratchSpace.hpp
	M			lib/kokkos/core/src/Kokkos_Serial.hpp
	M			lib/kokkos/core/src/Kokkos_TaskScheduler.hpp
	M			lib/kokkos/core/src/Kokkos_Threads.hpp
	M			lib/kokkos/core/src/Kokkos_Timer.hpp
	M			lib/kokkos/core/src/Kokkos_Vectorization.hpp
	M			lib/kokkos/core/src/Kokkos_View.hpp
	M			lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Parallel.hpp
	M			lib/kokkos/core/src/OpenMP/Kokkos_OpenMP_Task.cpp
	M			lib/kokkos/core/src/OpenMP/Kokkos_OpenMPexec.cpp
	M			lib/kokkos/core/src/OpenMP/Kokkos_OpenMPexec.hpp
	M			lib/kokkos/core/src/Qthread/Kokkos_QthreadExec.cpp
	M			lib/kokkos/core/src/Qthread/Kokkos_Qthread_Parallel.hpp
	M			lib/kokkos/core/src/Qthread/Kokkos_Qthread_TaskPolicy.cpp
	M			lib/kokkos/core/src/Threads/Kokkos_ThreadsExec.cpp
	M			lib/kokkos/core/src/Threads/Kokkos_ThreadsExec.hpp
	M			lib/kokkos/core/src/Threads/Kokkos_ThreadsExec_base.cpp
	M			lib/kokkos/core/src/Threads/Kokkos_ThreadsTeam.hpp
	M			lib/kokkos/core/src/Threads/Kokkos_Threads_Parallel.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Atomic_Assembly.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Atomic_Compare_Exchange_Strong.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Atomic_Decrement.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Atomic_Exchange.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Add.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_And.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Or.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Atomic_Fetch_Sub.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Atomic_Increment.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Core.cpp
	M			lib/kokkos/core/src/impl/Kokkos_Error.hpp
	M			lib/kokkos/core/src/impl/Kokkos_HBWSpace.cpp
	M			lib/kokkos/core/src/impl/Kokkos_HostSpace.cpp
	M			lib/kokkos/core/src/impl/Kokkos_Memory_Fence.hpp
	A			lib/kokkos/core/src/impl/Kokkos_OldMacros.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Serial.cpp
	M			lib/kokkos/core/src/impl/Kokkos_Serial_Task.cpp
	M			lib/kokkos/core/src/impl/Kokkos_Serial_Task.hpp
	M			lib/kokkos/core/src/impl/Kokkos_SharedAlloc.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Tags.hpp
	M			lib/kokkos/core/src/impl/Kokkos_TaskQueue.hpp
	M			lib/kokkos/core/src/impl/Kokkos_TaskQueue_impl.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Traits.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Utilities.hpp
	M			lib/kokkos/core/src/impl/Kokkos_ViewMapping.hpp
	M			lib/kokkos/core/src/impl/Kokkos_Volatile_Load.hpp
	M			lib/kokkos/core/src/impl/Kokkos_hwloc.cpp
	P			lib/kokkos/core/src/impl/Kokkos_spinwait.cpp Copied to lib/kokkos/core/unit_test/TestViewSpaceAssign.hpp
	M			lib/kokkos/core/unit_test/Makefile
	A			lib/kokkos/core/unit_test/TestAtomicViews.hpp
	M			lib/kokkos/core/unit_test/TestCXX11.hpp
	M			lib/kokkos/core/unit_test/TestCompilerMacros.hpp
	M			lib/kokkos/core/unit_test/TestDefaultDeviceType.cpp
	M			lib/kokkos/core/unit_test/TestDefaultDeviceTypeInit.hpp
	M			lib/kokkos/core/unit_test/TestDefaultDeviceType_a.cpp
	M			lib/kokkos/core/unit_test/TestDefaultDeviceType_b.cpp
	M			lib/kokkos/core/unit_test/TestDefaultDeviceType_c.cpp
	M			lib/kokkos/core/unit_test/TestDefaultDeviceType_d.cpp
	M			lib/kokkos/core/unit_test/TestMemoryPool.hpp
	M			lib/kokkos/core/unit_test/TestReduce.hpp
	M			lib/kokkos/core/unit_test/TestScan.hpp
	M			lib/kokkos/core/unit_test/TestSynchronic.cpp
	M			lib/kokkos/core/unit_test/TestTeam.hpp
	M			lib/kokkos/core/unit_test/TestTemplateMetaFunctions.hpp
	M			lib/kokkos/core/unit_test/TestViewAPI.hpp
	M			lib/kokkos/core/unit_test/TestViewMapping.hpp
	P			lib/kokkos/core/unit_test/TestViewSpaceAssign.hpp Copied from lib/kokkos/core/src/impl/Kokkos_spinwait.cpp
	M			lib/kokkos/core/unit_test/cuda/TestCuda.hpp
	M			lib/kokkos/core/unit_test/cuda/TestCuda_Atomics.cpp
	M			lib/kokkos/core/unit_test/cuda/TestCuda_Other.cpp
	M			lib/kokkos/core/unit_test/cuda/TestCuda_Team.cpp
	P			lib/kokkos/core/unit_test/cuda/TestCuda_ViewAPI_s.cpp Copied from lib/kokkos/LICENSE
	M			lib/kokkos/core/unit_test/openmp/TestOpenMP.hpp
	M			lib/kokkos/core/unit_test/openmp/TestOpenMP_Atomics.cpp
	M			lib/kokkos/core/unit_test/openmp/TestOpenMP_Other.cpp
	M			lib/kokkos/core/unit_test/openmp/TestOpenMP_Team.cpp
	M			lib/kokkos/core/unit_test/serial/TestSerial.hpp
	M			lib/kokkos/core/unit_test/serial/TestSerial_Atomics.cpp
	M			lib/kokkos/core/unit_test/serial/TestSerial_Other.cpp
	M			lib/kokkos/core/unit_test/serial/TestSerial_Team.cpp
	M			lib/kokkos/core/unit_test/threads/TestThreads.hpp
	M			lib/kokkos/core/unit_test/threads/TestThreads_Atomics.cpp
	M			lib/kokkos/core/unit_test/threads/TestThreads_Other.cpp
	M			lib/kokkos/core/unit_test/threads/TestThreads_Team.cpp
	M			lib/kokkos/example/cmake/Dependencies.cmake
	M			lib/kokkos/example/common/VectorImport.hpp
	M			lib/kokkos/example/common/WrapMPI.hpp
	M			lib/kokkos/example/feint/feint_cuda.cpp
	M			lib/kokkos/example/feint/feint_openmp.cpp
	M			lib/kokkos/example/feint/feint_threads.cpp
	M			lib/kokkos/example/feint/main.cpp
	M			lib/kokkos/example/fenl/fenl.cpp
	M			lib/kokkos/example/fenl/fenl_impl.hpp
	M			lib/kokkos/example/fenl/main.cpp
	M			lib/kokkos/example/fixture/Main.cpp
	M			lib/kokkos/example/fixture/TestFixture.cpp
	M			lib/kokkos/example/global_2_local_ids/G2L_Main.cpp
	M			lib/kokkos/example/grow_array/grow_array.hpp
	M			lib/kokkos/example/grow_array/main.cpp
	M			lib/kokkos/example/md_skeleton/force.cpp
	M			lib/kokkos/example/md_skeleton/main.cpp
	M			lib/kokkos/example/multi_fem/Explicit.hpp
	M			lib/kokkos/example/multi_fem/LinAlgBLAS.hpp
	M			lib/kokkos/example/multi_fem/Nonlinear.hpp
	M			lib/kokkos/example/multi_fem/ParallelComm.hpp
	M			lib/kokkos/example/multi_fem/ParallelDataMap.hpp
	M			lib/kokkos/example/multi_fem/ParallelMachine.cpp
	M			lib/kokkos/example/multi_fem/ParallelMachine.hpp
	M			lib/kokkos/example/multi_fem/SparseLinearSystem.hpp
	M			lib/kokkos/example/multi_fem/TestBoxMeshFixture.hpp
	M			lib/kokkos/example/multi_fem/TestCuda.cpp
	M			lib/kokkos/example/multi_fem/TestHybridFEM.cpp
	M			lib/kokkos/example/query_device/query_device.cpp
	M			lib/kokkos/example/sort_array/main.cpp
	M			lib/kokkos/example/sort_array/sort_array.hpp
	M			lib/kokkos/example/tutorial/01_hello_world_lambda/hello_world_lambda.cpp
	M			lib/kokkos/example/tutorial/02_simple_reduce_lambda/simple_reduce_lambda.cpp
	M			lib/kokkos/example/tutorial/03_simple_view_lambda/simple_view_lambda.cpp
	M			lib/kokkos/example/tutorial/Advanced_Views/05_NVIDIA_UVM/uvm_example.cpp
	M			lib/kokkos/example/tutorial/Hierarchical_Parallelism/01_thread_teams_lambda/thread_teams_lambda.cpp
	M			lib/kokkos/example/tutorial/Hierarchical_Parallelism/03_vectorization/vectorization.cpp
	M			lib/kokkos/generate_makefile.bash
	D			lib/kokkos/tpls
	D			lib/kokkos/tpls/gtest
	D			lib/kokkos/tpls/gtest/gtest
	D			lib/kokkos/tpls/gtest/gtest/LICENSE
	D			lib/kokkos/tpls/gtest/gtest/README
	D			lib/kokkos/tpls/gtest/gtest/gtest-all.cc
	D			lib/kokkos/tpls/gtest/gtest/gtest-test-part.h
	D			lib/kokkos/tpls/gtest/gtest/gtest.h
	A			potentials/He_He_JW2013.table
	A			potentials/W.SNAP_HePair.pot
	A			potentials/W_2940_2017_2.pot.snap
	A			potentials/W_2940_2017_2.snapcoeff
	A			potentials/W_2940_2017_2.snapparam
	A			potentials/W_He_JW2013.table
	M			src/CLASS2/angle_class2.cpp
	M			src/CLASS2/bond_class2.cpp
	M			src/CLASS2/dihedral_class2.cpp
	M			src/CLASS2/improper_class2.cpp
	M			src/COMPRESS/README
	M			src/GPU/pppm_gpu.cpp
	M			src/GPU/pppm_gpu.h
	M			src/GRANULAR/fix_wall_gran_region.cpp
	M			src/GRANULAR/pair_gran_hertz_history.cpp
	M			src/GRANULAR/pair_gran_hooke_history.cpp
	M			src/KOKKOS/Install.sh
	A			src/KOKKOS/angle_class2_kokkos.cpp
	A			src/KOKKOS/angle_class2_kokkos.h
	A			src/KOKKOS/bond_class2_kokkos.cpp
	A			src/KOKKOS/bond_class2_kokkos.h
	A			src/KOKKOS/dihedral_class2_kokkos.cpp
	A			src/KOKKOS/dihedral_class2_kokkos.h
	M			src/KOKKOS/fix_qeq_reax_kokkos.cpp
	A			src/KOKKOS/improper_class2_kokkos.cpp
	A			src/KOKKOS/improper_class2_kokkos.h
	M			src/KOKKOS/neighbor_kokkos.cpp
	M			src/KSPACE/pair_buck_long_coul_long.cpp
	M			src/KSPACE/pair_lj_charmm_coul_long.cpp
	M			src/KSPACE/pair_lj_cut_coul_long.cpp
	M			src/KSPACE/pair_lj_long_coul_long.cpp
	M			src/MAKE/OPTIONS/Makefile.kokkos_phi
	M			src/MAKE/OPTIONS/Makefile.omp
	M			src/MC/fix_gcmc.cpp
	M			src/MEAM/pair_meam.cpp
	M			src/USER-DPD/npair_halffull_newton_ssa.h
	M			src/USER-MGPT/pair_mgpt.cpp
	M			src/USER-MISC/pair_meam_spline.cpp
	M			src/USER-MISC/pair_meam_sw_spline.cpp
	M			src/USER-OMP/fix_shear_history_omp.cpp
	M			src/USER-OMP/npair_half_size_bin_newtoff_omp.cpp
	M			src/USER-OMP/npair_half_size_bin_newton_omp.cpp
	M			src/USER-OMP/npair_half_size_nsq_newtoff_omp.cpp
	M			src/USER-OMP/npair_half_size_nsq_newton_omp.cpp
	M			src/USER-OMP/npair_halffull_newtoff_omp.h
	M			src/USER-OMP/npair_halffull_newton_omp.h
	M			src/USER-OMP/npair_skip_omp.h
	M			src/USER-OMP/pair_gran_hertz_history_omp.cpp
	M			src/USER-OMP/pair_gran_hooke_history_omp.cpp
	M			src/USER-SMD/pair_smd_hertz.cpp
	M			src/USER-SMD/pair_smd_tlsph.cpp
	M			src/USER-SMD/pair_smd_triangulated_surface.cpp
	M			src/USER-SMD/pair_smd_ulsph.cpp
	M			src/compute_contact_atom.cpp
	M			src/compute_rdf.cpp
	M			src/compute_rdf.h
	M			src/finish.cpp
	M			src/fix_shear_history.cpp
	M			src/imbalance_neigh.cpp
	M			src/nbin.cpp
	M			src/nbin.h
	M			src/neigh_list.cpp
	M			src/neigh_list.h
	M			src/neigh_request.cpp
	M			src/neigh_request.h
	M			src/neighbor.cpp
	M			src/neighbor.h
	M			src/npair.cpp
	M			src/npair.h
	P			src/npair_full_bin.h Copied to src/npair_full_bin_atomonly.h
	P			src/npair_full_bin_atomonly.cpp Copied from src/npair_skip.cpp
	P			src/npair_full_bin_atomonly.h Copied from src/npair_full_bin.h
	A			src/npair_half_bin_atomonly_newton.cpp
	P			src/npair_half_bin_atomonly_newton.h Copied from src/npair_halffull_newton.h
	M			src/npair_half_bin_newton.h
	M			src/npair_half_size_bin_newtoff.cpp
	M			src/npair_half_size_bin_newton.cpp
	M			src/npair_half_size_bin_newton_tri.cpp
	M			src/npair_half_size_nsq_newtoff.cpp
	M			src/npair_half_size_nsq_newton.cpp
	M			src/npair_halffull_newtoff.h
	P			src/npair_halffull_newton.h Copied to src/npair_half_bin_atomonly_newton.h
	P			src/npair_skip.cpp Copied to src/npair_full_bin_atomonly.cpp
	M			src/npair_skip.h
	M			src/npair_skip_size.cpp
	M			src/npair_skip_size_off2on.cpp
	M			src/npair_skip_size_off2on_oneside.cpp
	M			src/nstencil.cpp
	M			src/nstencil.h
	M			src/pair.h
	M			src/pair_coul_streitz.cpp
	M			src/pair_hybrid.cpp
	M			src/pair_hybrid.h
	M			src/pair_hybrid_overlay.cpp
	M			src/pair_hybrid_overlay.h
	M			src/pair_lj96_cut.cpp
	M			src/pair_lj_cut.cpp
	M			src/pair_mie_cut.cpp
	M			src/version.h