diff --git a/doc/compute_angle.html b/doc/compute_angle.html
new file mode 100644
index 000000000..cb02702c1
--- /dev/null
+++ b/doc/compute_angle.html
@@ -0,0 +1,237 @@
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+<li class="toctree-l1"><a class="reference internal" href="Section_commands.html">3. Commands</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_packages.html">4. Packages</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_accelerate.html">5. Accelerating LAMMPS performance</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_howto.html">6. How-to discussions</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_example.html">7. Example problems</a></li>
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+<li class="toctree-l1"><a class="reference internal" href="Section_python.html">11. Python interface to LAMMPS</a></li>
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+ <a href="Section_commands.html#comm">Commands</a>
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+ <div itemprop="articleBody">
+
+ <div class="section" id="compute-angle-command">
+<span id="index-0"></span><h1>compute angle command<a class="headerlink" href="#compute-angle-command" title="Permalink to this headline">¶</a></h1>
+<div class="section" id="syntax">
+<h2>Syntax<a class="headerlink" href="#syntax" title="Permalink to this headline">¶</a></h2>
+<div class="highlight-python"><div class="highlight"><pre>compute ID group-ID angle
+</pre></div>
+</div>
+<ul class="simple">
+<li>ID, group-ID are documented in <a class="reference internal" href="compute.html"><em>compute</em></a> command</li>
+<li>angle = style name of this compute command</li>
+</ul>
+</div>
+<div class="section" id="examples">
+<h2>Examples<a class="headerlink" href="#examples" title="Permalink to this headline">¶</a></h2>
+<div class="highlight-python"><div class="highlight"><pre>compute 1 all angle
+</pre></div>
+</div>
+</div>
+<div class="section" id="description">
+<h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
+<p>Define a computation that extracts the angle energy calculated by each
+of the angle sub-styles used in the “angle_style
+hybrid” angle_hybrid.html command. These values are made accessible
+for output or further processing by other commands. The group
+specified for this command is ignored.</p>
+<p>This compute is useful when using <a class="reference internal" href="angle_hybrid.html"><em>angle_style hybrid</em></a> if you want to know the portion of the total
+energy contributed by one or more of the hybrid sub-styles.</p>
+<p><strong>Output info:</strong></p>
+<p>This compute calculates a global vector of length N where N is the
+number of sub_styles defined by the <a class="reference internal" href="angle_style.html"><em>angle_style hybrid</em></a> command, which can be accessed by indices
+1-N. These values can be used by any command that uses global scalar
+or vector values from a compute as input. See <a class="reference internal" href="Section_howto.html#howto-15"><span>this section</span></a> for an overview of LAMMPS output
+options.</p>
+<p>The vector values are “extensive” and will be in energy
+<a class="reference internal" href="units.html"><em>units</em></a>.</p>
+</div>
+<div class="section" id="restrictions">
+<h2>Restrictions<a class="headerlink" href="#restrictions" title="Permalink to this headline">¶</a></h2>
+<blockquote>
+<div>none</div></blockquote>
+</div>
+<div class="section" id="related-commands">
+<h2>Related commands<a class="headerlink" href="#related-commands" title="Permalink to this headline">¶</a></h2>
+<p><a class="reference internal" href="compute_pe.html"><em>compute pe</em></a>, <a class="reference internal" href="compute_pair.html"><em>compute pair</em></a></p>
+<p><strong>Default:</strong> none</p>
+</div>
+</div>
+
+
+ </div>
+ </div>
+ <footer>
+
+
+ <hr/>
+
+ <div role="contentinfo">
+ <p>
+ © Copyright 2013 Sandia Corporation.
+ </p>
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diff --git a/doc/compute_angle.rst b/doc/compute_angle.rst
new file mode 100644
index 000000000..91df79f90
--- /dev/null
+++ b/doc/compute_angle.rst
@@ -0,0 +1,60 @@
+.. index:: compute angle
+
+compute angle command
+=====================
+
+Syntax
+""""""
+
+.. parsed-literal::
+
+ compute ID group-ID angle
+
+* ID, group-ID are documented in :doc:`compute <compute>` command
+* angle = style name of this compute command
+
+Examples
+""""""""
+
+.. parsed-literal::
+
+ compute 1 all angle
+
+Description
+"""""""""""
+
+Define a computation that extracts the angle energy calculated by each
+of the angle sub-styles used in the "angle_style
+hybrid" angle_hybrid.html command. These values are made accessible
+for output or further processing by other commands. The group
+specified for this command is ignored.
+
+This compute is useful when using :doc:`angle_style hybrid <angle_hybrid>` if you want to know the portion of the total
+energy contributed by one or more of the hybrid sub-styles.
+
+**Output info:**
+
+This compute calculates a global vector of length N where N is the
+number of sub_styles defined by the :doc:`angle_style hybrid <angle_style>` command, which can be accessed by indices
+1-N. These values can be used by any command that uses global scalar
+or vector values from a compute as input. See :ref:`this section <howto_15>` for an overview of LAMMPS output
+options.
+
+The vector values are "extensive" and will be in energy
+:doc:`units <units>`.
+
+Restrictions
+""""""""""""
+ none
+
+Related commands
+""""""""""""""""
+
+:doc:`compute pe <compute_pe>`, :doc:`compute pair <compute_pair>`
+
+**Default:** none
+
+
+.. _lws: http://lammps.sandia.gov
+.. _ld: Manual.html
+.. _lc: Section_commands.html#comm
diff --git a/doc/compute_angle.txt b/doc/compute_angle.txt
new file mode 100644
index 000000000..2c363ce8f
--- /dev/null
+++ b/doc/compute_angle.txt
@@ -0,0 +1,53 @@
+"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
+
+:link(lws,http://lammps.sandia.gov)
+:link(ld,Manual.html)
+:link(lc,Section_commands.html#comm)
+
+:line
+
+compute angle command :h3
+
+[Syntax:]
+
+compute ID group-ID angle :pre
+
+ID, group-ID are documented in "compute"_compute.html command
+angle = style name of this compute command :ul
+
+[Examples:]
+
+compute 1 all angle :pre
+
+[Description:]
+
+Define a computation that extracts the angle energy calculated by each
+of the angle sub-styles used in the "angle_style
+hybrid" angle_hybrid.html command. These values are made accessible
+for output or further processing by other commands. The group
+specified for this command is ignored.
+
+This compute is useful when using "angle_style
+hybrid"_angle_hybrid.html if you want to know the portion of the total
+energy contributed by one or more of the hybrid sub-styles.
+
+[Output info:]
+
+This compute calculates a global vector of length N where N is the
+number of sub_styles defined by the "angle_style
+hybrid"_angle_style.html command, which can be accessed by indices
+1-N. These values can be used by any command that uses global scalar
+or vector values from a compute as input. See "this
+section"_Section_howto.html#howto_15 for an overview of LAMMPS output
+options.
+
+The vector values are "extensive" and will be in energy
+"units"_units.html.
+
+[Restrictions:] none
+
+[Related commands:]
+
+"compute pe"_compute_pe.html, "compute pair"_compute_pair.html
+
+[Default:] none
diff --git a/doc/compute_dihedral.html b/doc/compute_dihedral.html
new file mode 100644
index 000000000..9b66c341d
--- /dev/null
+++ b/doc/compute_dihedral.html
@@ -0,0 +1,236 @@
+
+
+<!DOCTYPE html>
+<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
+<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
+<head>
+ <meta charset="utf-8">
+
+ <meta name="viewport" content="width=device-width, initial-scale=1.0">
+
+ <title>compute dihedral command — LAMMPS documentation</title>
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+
+
+
+ <ul>
+<li class="toctree-l1"><a class="reference internal" href="Section_intro.html">1. Introduction</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_start.html">2. Getting Started</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_commands.html">3. Commands</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_packages.html">4. Packages</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_accelerate.html">5. Accelerating LAMMPS performance</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_howto.html">6. How-to discussions</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_example.html">7. Example problems</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_perf.html">8. Performance & scalability</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_tools.html">9. Additional tools</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_modify.html">10. Modifying & extending LAMMPS</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_python.html">11. Python interface to LAMMPS</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_errors.html">12. Errors</a></li>
+<li class="toctree-l1"><a class="reference internal" href="Section_history.html">13. Future and history</a></li>
+</ul>
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+
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+ <li class="wy-breadcrumbs-aside">
+
+
+ <a href="http://lammps.sandia.gov">Website</a>
+ <a href="Section_commands.html#comm">Commands</a>
+
+ </li>
+ </ul>
+ <hr/>
+
+</div>
+ <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+ <div itemprop="articleBody">
+
+ <div class="section" id="compute-dihedral-command">
+<span id="index-0"></span><h1>compute dihedral command<a class="headerlink" href="#compute-dihedral-command" title="Permalink to this headline">¶</a></h1>
+<div class="section" id="syntax">
+<h2>Syntax<a class="headerlink" href="#syntax" title="Permalink to this headline">¶</a></h2>
+<div class="highlight-python"><div class="highlight"><pre>compute ID group-ID dihedral
+</pre></div>
+</div>
+<ul class="simple">
+<li>ID, group-ID are documented in <a class="reference internal" href="compute.html"><em>compute</em></a> command</li>
+<li>dihedral = style name of this compute command</li>
+</ul>
+</div>
+<div class="section" id="examples">
+<h2>Examples<a class="headerlink" href="#examples" title="Permalink to this headline">¶</a></h2>
+<div class="highlight-python"><div class="highlight"><pre>compute 1 all dihedral
+</pre></div>
+</div>
+</div>
+<div class="section" id="description">
+<h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
+<p>Define a computation that extracts the dihedral energy calculated by
+each of the dihedral sub-styles used in the <a class="reference internal" href="dihedral_hybrid.html"><em>dihedral_style hybrid</em></a> command. These values are made
+accessible for output or further processing by other commands. The
+group specified for this command is ignored.</p>
+<p>This compute is useful when using <a class="reference internal" href="dihedral_hybrid.html"><em>dihedral_style hybrid</em></a> if you want to know the portion of the
+total energy contributed by one or more of the hybrid sub-styles.</p>
+<p><strong>Output info:</strong></p>
+<p>This compute calculates a global vector of length N where N is the
+number of sub_styles defined by the <a class="reference internal" href="dihedral_style.html"><em>dihedral_style hybrid</em></a> command. which can be accessed by indices
+1-N. These values can be used by any command that uses global scalar
+or vector values from a compute as input. See <a class="reference internal" href="Section_howto.html#howto-15"><span>this section</span></a> for an overview of LAMMPS output
+options.</p>
+<p>The vector values are “extensive” and will be in energy
+<a class="reference internal" href="units.html"><em>units</em></a>.</p>
+</div>
+<div class="section" id="restrictions">
+<h2>Restrictions<a class="headerlink" href="#restrictions" title="Permalink to this headline">¶</a></h2>
+<blockquote>
+<div>none</div></blockquote>
+</div>
+<div class="section" id="related-commands">
+<h2>Related commands<a class="headerlink" href="#related-commands" title="Permalink to this headline">¶</a></h2>
+<p><a class="reference internal" href="compute_pe.html"><em>compute pe</em></a>, <a class="reference internal" href="compute_pair.html"><em>compute pair</em></a></p>
+<p><strong>Default:</strong> none</p>
+</div>
+</div>
+
+
+ </div>
+ </div>
+ <footer>
+
+
+ <hr/>
+
+ <div role="contentinfo">
+ <p>
+ © Copyright 2013 Sandia Corporation.
+ </p>
+ </div>
+ Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
+</footer>
+
+ </div>
+ </div>
+
+ </section>
+
+ </div>
+
+
+
+
+
+ <script type="text/javascript">
+ var DOCUMENTATION_OPTIONS = {
+ URL_ROOT:'./',
+ VERSION:'',
+ COLLAPSE_INDEX:false,
+ FILE_SUFFIX:'.html',
+ HAS_SOURCE: true
+ };
+ </script>
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\ No newline at end of file
diff --git a/doc/compute_dihedral.rst b/doc/compute_dihedral.rst
new file mode 100644
index 000000000..8c0281e40
--- /dev/null
+++ b/doc/compute_dihedral.rst
@@ -0,0 +1,59 @@
+.. index:: compute dihedral
+
+compute dihedral command
+========================
+
+Syntax
+""""""
+
+.. parsed-literal::
+
+ compute ID group-ID dihedral
+
+* ID, group-ID are documented in :doc:`compute <compute>` command
+* dihedral = style name of this compute command
+
+Examples
+""""""""
+
+.. parsed-literal::
+
+ compute 1 all dihedral
+
+Description
+"""""""""""
+
+Define a computation that extracts the dihedral energy calculated by
+each of the dihedral sub-styles used in the :doc:`dihedral_style hybrid <dihedral_hybrid>` command. These values are made
+accessible for output or further processing by other commands. The
+group specified for this command is ignored.
+
+This compute is useful when using :doc:`dihedral_style hybrid <dihedral_hybrid>` if you want to know the portion of the
+total energy contributed by one or more of the hybrid sub-styles.
+
+**Output info:**
+
+This compute calculates a global vector of length N where N is the
+number of sub_styles defined by the :doc:`dihedral_style hybrid <dihedral_style>` command. which can be accessed by indices
+1-N. These values can be used by any command that uses global scalar
+or vector values from a compute as input. See :ref:`this section <howto_15>` for an overview of LAMMPS output
+options.
+
+The vector values are "extensive" and will be in energy
+:doc:`units <units>`.
+
+Restrictions
+""""""""""""
+ none
+
+Related commands
+""""""""""""""""
+
+:doc:`compute pe <compute_pe>`, :doc:`compute pair <compute_pair>`
+
+**Default:** none
+
+
+.. _lws: http://lammps.sandia.gov
+.. _ld: Manual.html
+.. _lc: Section_commands.html#comm
diff --git a/doc/compute_dihedral.txt b/doc/compute_dihedral.txt
new file mode 100644
index 000000000..a3c3dff8d
--- /dev/null
+++ b/doc/compute_dihedral.txt
@@ -0,0 +1,53 @@
+"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
+
+:link(lws,http://lammps.sandia.gov)
+:link(ld,Manual.html)
+:link(lc,Section_commands.html#comm)
+
+:line
+
+compute dihedral command :h3
+
+[Syntax:]
+
+compute ID group-ID dihedral :pre
+
+ID, group-ID are documented in "compute"_compute.html command
+dihedral = style name of this compute command :ul
+
+[Examples:]
+
+compute 1 all dihedral :pre
+
+[Description:]
+
+Define a computation that extracts the dihedral energy calculated by
+each of the dihedral sub-styles used in the "dihedral_style
+hybrid"_dihedral_hybrid.html command. These values are made
+accessible for output or further processing by other commands. The
+group specified for this command is ignored.
+
+This compute is useful when using "dihedral_style
+hybrid"_dihedral_hybrid.html if you want to know the portion of the
+total energy contributed by one or more of the hybrid sub-styles.
+
+[Output info:]
+
+This compute calculates a global vector of length N where N is the
+number of sub_styles defined by the "dihedral_style
+hybrid"_dihedral_style.html command. which can be accessed by indices
+1-N. These values can be used by any command that uses global scalar
+or vector values from a compute as input. See "this
+section"_Section_howto.html#howto_15 for an overview of LAMMPS output
+options.
+
+The vector values are "extensive" and will be in energy
+"units"_units.html.
+
+[Restrictions:] none
+
+[Related commands:]
+
+"compute pe"_compute_pe.html, "compute pair"_compute_pair.html
+
+[Default:] none
diff --git a/doc/compute_improper.html b/doc/compute_improper.html
new file mode 100644
index 000000000..13b63e064
--- /dev/null
+++ b/doc/compute_improper.html
@@ -0,0 +1,236 @@
+
+
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+
+ <div class="section" id="compute-improper-command">
+<span id="index-0"></span><h1>compute improper command<a class="headerlink" href="#compute-improper-command" title="Permalink to this headline">¶</a></h1>
+<div class="section" id="syntax">
+<h2>Syntax<a class="headerlink" href="#syntax" title="Permalink to this headline">¶</a></h2>
+<div class="highlight-python"><div class="highlight"><pre>compute ID group-ID improper
+</pre></div>
+</div>
+<ul class="simple">
+<li>ID, group-ID are documented in <a class="reference internal" href="compute.html"><em>compute</em></a> command</li>
+<li>improper = style name of this compute command</li>
+</ul>
+</div>
+<div class="section" id="examples">
+<h2>Examples<a class="headerlink" href="#examples" title="Permalink to this headline">¶</a></h2>
+<div class="highlight-python"><div class="highlight"><pre>compute 1 all improper
+</pre></div>
+</div>
+</div>
+<div class="section" id="description">
+<h2>Description<a class="headerlink" href="#description" title="Permalink to this headline">¶</a></h2>
+<p>Define a computation that extracts the improper energy calculated by
+each of the improper sub-styles used in the <a class="reference internal" href="improper_hybrid.html"><em>improper_style hybrid</em></a> command. These values are made
+accessible for output or further processing by other commands. The
+group specified for this command is ignored.</p>
+<p>This compute is useful when using <a class="reference internal" href="improper_hybrid.html"><em>improper_style hybrid</em></a> if you want to know the portion of the
+total energy contributed by one or more of the hybrid sub-styles.</p>
+<p><strong>Output info:</strong></p>
+<p>This compute calculates a global vector of length N where N is the
+number of sub_styles defined by the <a class="reference internal" href="improper_style.html"><em>improper_style hybrid</em></a> command. which can be accessed by indices
+1-N. These values can be used by any command that uses global scalar
+or vector values from a compute as input. See <a class="reference internal" href="Section_howto.html#howto-15"><span>this section</span></a> for an overview of LAMMPS output
+options.</p>
+<p>The vector values are “extensive” and will be in energy
+<a class="reference internal" href="units.html"><em>units</em></a>.</p>
+</div>
+<div class="section" id="restrictions">
+<h2>Restrictions<a class="headerlink" href="#restrictions" title="Permalink to this headline">¶</a></h2>
+<blockquote>
+<div>none</div></blockquote>
+</div>
+<div class="section" id="related-commands">
+<h2>Related commands<a class="headerlink" href="#related-commands" title="Permalink to this headline">¶</a></h2>
+<p><a class="reference internal" href="compute_pe.html"><em>compute pe</em></a>, <a class="reference internal" href="compute_pair.html"><em>compute pair</em></a></p>
+<p><strong>Default:</strong> none</p>
+</div>
+</div>
+
+
+ </div>
+ </div>
+ <footer>
+
+
+ <hr/>
+
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+ © Copyright 2013 Sandia Corporation.
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\ No newline at end of file
diff --git a/doc/compute_improper.rst b/doc/compute_improper.rst
new file mode 100644
index 000000000..ade78d6cb
--- /dev/null
+++ b/doc/compute_improper.rst
@@ -0,0 +1,59 @@
+.. index:: compute improper
+
+compute improper command
+========================
+
+Syntax
+""""""
+
+.. parsed-literal::
+
+ compute ID group-ID improper
+
+* ID, group-ID are documented in :doc:`compute <compute>` command
+* improper = style name of this compute command
+
+Examples
+""""""""
+
+.. parsed-literal::
+
+ compute 1 all improper
+
+Description
+"""""""""""
+
+Define a computation that extracts the improper energy calculated by
+each of the improper sub-styles used in the :doc:`improper_style hybrid <improper_hybrid>` command. These values are made
+accessible for output or further processing by other commands. The
+group specified for this command is ignored.
+
+This compute is useful when using :doc:`improper_style hybrid <improper_hybrid>` if you want to know the portion of the
+total energy contributed by one or more of the hybrid sub-styles.
+
+**Output info:**
+
+This compute calculates a global vector of length N where N is the
+number of sub_styles defined by the :doc:`improper_style hybrid <improper_style>` command. which can be accessed by indices
+1-N. These values can be used by any command that uses global scalar
+or vector values from a compute as input. See :ref:`this section <howto_15>` for an overview of LAMMPS output
+options.
+
+The vector values are "extensive" and will be in energy
+:doc:`units <units>`.
+
+Restrictions
+""""""""""""
+ none
+
+Related commands
+""""""""""""""""
+
+:doc:`compute pe <compute_pe>`, :doc:`compute pair <compute_pair>`
+
+**Default:** none
+
+
+.. _lws: http://lammps.sandia.gov
+.. _ld: Manual.html
+.. _lc: Section_commands.html#comm
diff --git a/doc/compute_improper.txt b/doc/compute_improper.txt
new file mode 100644
index 000000000..f0d2fa400
--- /dev/null
+++ b/doc/compute_improper.txt
@@ -0,0 +1,53 @@
+"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c
+
+:link(lws,http://lammps.sandia.gov)
+:link(ld,Manual.html)
+:link(lc,Section_commands.html#comm)
+
+:line
+
+compute improper command :h3
+
+[Syntax:]
+
+compute ID group-ID improper :pre
+
+ID, group-ID are documented in "compute"_compute.html command
+improper = style name of this compute command :ul
+
+[Examples:]
+
+compute 1 all improper :pre
+
+[Description:]
+
+Define a computation that extracts the improper energy calculated by
+each of the improper sub-styles used in the "improper_style
+hybrid"_improper_hybrid.html command. These values are made
+accessible for output or further processing by other commands. The
+group specified for this command is ignored.
+
+This compute is useful when using "improper_style
+hybrid"_improper_hybrid.html if you want to know the portion of the
+total energy contributed by one or more of the hybrid sub-styles.
+
+[Output info:]
+
+This compute calculates a global vector of length N where N is the
+number of sub_styles defined by the "improper_style
+hybrid"_improper_style.html command. which can be accessed by indices
+1-N. These values can be used by any command that uses global scalar
+or vector values from a compute as input. See "this
+section"_Section_howto.html#howto_15 for an overview of LAMMPS output
+options.
+
+The vector values are "extensive" and will be in energy
+"units"_units.html.
+
+[Restrictions:] none
+
+[Related commands:]
+
+"compute pe"_compute_pe.html, "compute pair"_compute_pair.html
+
+[Default:] none