Homec4science
Diffusion lammps bbeddc892238

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10940 f3b2605a-c512-4ea7…
bbeddc892238
Actions

Authored by sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa> on Nov 4 2013, 18:10.

Description

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10940 f3b2605a-c512-4ea7-a41b-209d697bcdaa

Details

Committed
sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa>Nov 4 2013, 18:10
Pushed
jungeOct 6 2016, 16:49
Parents
rLAMMPS0b7666f338a5: git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10937 f3b2605a-c512-4ea7…
Branches
Unknown
Tags
Unknown

Event Timeline

sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa> committed rLAMMPSbbeddc892238: git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10940 f3b2605a-c512-4ea7… (authored by sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa>).Nov 4 2013, 18:10

Changes (484)

Path
Dtools/moltemplate
Dtools/moltemplate/LICENSE.TXT
Dtools/moltemplate/README.TXT
Dtools/moltemplate/common
Dtools/moltemplate/common/graphene.lt
Dtools/moltemplate/common/images
Dtools/moltemplate/common/images/graphene_unit_cell.jpg
Dtools/moltemplate/common/images/ice_rect8_unitcell.png
Dtools/moltemplate/common/images/spce_ball_and_stick.jpg
Dtools/moltemplate/common/spce.lt
Dtools/moltemplate/common/spce_ice_rect8.lt
Dtools/moltemplate/common/tip3p_attempts
Dtools/moltemplate/common/tip3p_attempts/README.TXT
Dtools/moltemplate/common/tip3p_attempts/tip3p2004.lt
Dtools/moltemplate/common/tip3p_attempts/tip3pcharmm.lt
Dtools/moltemplate/common/trappe1998.lt
Dtools/moltemplate/common/watmw.lt
Dtools/moltemplate/examples
Dtools/moltemplate/examples/CG_biomolecules
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/README_run.sh
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/README_setup.sh
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/README_visualize.txt
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/images
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/images/4HelixOrig+Lipid2005_t=1290ps_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_no_pbc_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_top_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=5000ps_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010.lt
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010_variations.lt
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/CGLipidBr2005.lt
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/table_int.dat
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.min
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.npt
Dtools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.nvt
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_run.sh
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_setup.sh
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_visualize.txt
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DLPC.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_no_pbc_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=500ps_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC.jpg
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/CGLipidBr2005Orig.lt
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/calc_table.py
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/version_charmm_cutoff
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/table_int.dat
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.min
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.npt
Dtools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.nvt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_run.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_setup.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_visualize.txt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/misfolded+chaperonin_t=0tau_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/unfolded+chaperonin_t=508750tau_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated_variants.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/chaperonin.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_dihedral_table.py
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_dihedral_frustrated.dat
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/run.in.min
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/run.in.nvt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_run.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_setup.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_visualize.txt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=0tau_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=67500tau_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated_variants.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_chaperone_table.py
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_dihedral_table.py
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/minichaperone.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_dihedral_frustrated.dat
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.6.dat
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.dat
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/run.in.min
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/run.in.nvt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_run.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_setup.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_visualize.txt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/initial_conformation_t=0tau.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/misfolded_conformation_t=1250tau.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated_variants.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables/calc_dihedral_table.py
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/table_dihedral_frustrated.dat
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/run.in.min
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/run_short_sim.in.nvt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_run.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_setup.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_visualize.txt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=0tau_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=105tau_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated_variants.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/chaperonin.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/run.in.min
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/run.in.nvt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_run.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_setup.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_visualize.txt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/unfrustrated_t=0tau_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/unfrustrated_t=200tau_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated_variants.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/run.in.min
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/run.in.nvt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_run.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_setup.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_visualize.txt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/4HelixBundle_t=0.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/4SheetBundle_t=0.jpg
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/1beadProtSci2010.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/README.sh
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/charmm
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/charmm/1beadProtSci2010.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/class2
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/class2/1beadProtSci2010.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/run.in.min
Dtools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/run.in.nvt
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README.TXT
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_run.sh
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_setup.sh
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_visualize.txt
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/images
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/images/vesicle_hole_blackbk_LR.jpg
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/1beadProtSci2010.lt
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/1beadProtSci2010_variations.lt
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/CGLipidBr2005.lt
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/README.sh
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/version_charmm_cutoff
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/table_int.dat
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/DLPC.xyz
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/DPPC.xyz
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/README.sh
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/protein.xyz
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step1_proteins.inp
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step2_innerlayer.inp
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step3_outerlayer.inp
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/run.in.min
Dtools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/run.in.nvt
Dtools/moltemplate/examples/CG_misc
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/README.TXT
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_run.sh
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_setup.sh
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_visualize.txt
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/images
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/2bead_heteropolymer_t=0.jpg
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/2bead_heteropolymer_t=1000ps.jpg
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/for_visualization
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/2bead.lt
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/2bead_angles.lt
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/README.sh
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/peptide.lt
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/simplified_version_one_residue
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/simplified_version_one_residue/2bead_simple.lt
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_misc/2bead_heteropolymer/run.in.nvt
Dtools/moltemplate/examples/CG_misc/random_heteropolymer
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/README.TXT
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/README_run.sh
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/README_setup.sh
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/README_visualize.txt
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/images
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/images/2bead.jpg
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/images/3bead.jpg
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/images/for_visualization
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/images/random_heteropolymer_t=0ps.jpg
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/images/random_heteropolymer_t=1ns.jpg
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files/monomers.lt
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files/polymer.lt
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_misc/random_heteropolymer/run.in.nvt
Dtools/moltemplate/examples/CG_misc/translocation
Dtools/moltemplate/examples/CG_misc/translocation/README.TXT
Dtools/moltemplate/examples/CG_misc/translocation/README_run.sh
Dtools/moltemplate/examples/CG_misc/translocation/README_setup.sh
Dtools/moltemplate/examples/CG_misc/translocation/README_visualize.txt
Dtools/moltemplate/examples/CG_misc/translocation/images
Dtools/moltemplate/examples/CG_misc/translocation/images/for_visualization
Dtools/moltemplate/examples/CG_misc/translocation/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_misc/translocation/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_misc/translocation/images/walls+solvent+polymer_t=0.jpg
Dtools/moltemplate/examples/CG_misc/translocation/moltemplate_files
Dtools/moltemplate/examples/CG_misc/translocation/moltemplate_files/monomer.lt
Dtools/moltemplate/examples/CG_misc/translocation/moltemplate_files/polymer.lt
Dtools/moltemplate/examples/CG_misc/translocation/moltemplate_files/solvent.lt
Dtools/moltemplate/examples/CG_misc/translocation/moltemplate_files/solvent_single.lt
Dtools/moltemplate/examples/CG_misc/translocation/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_misc/translocation/moltemplate_files/wall_single.lt
Dtools/moltemplate/examples/CG_misc/translocation/moltemplate_files/walls.lt
Dtools/moltemplate/examples/CG_misc/translocation/run.in.npt
Dtools/moltemplate/examples/CG_misc/translocation/run.in.nvt
Dtools/moltemplate/examples/CG_solvent
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README.TXT
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_run.sh
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_setup.sh
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_visualize.txt
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclododecane+watMW_t=0ps_LR.jpg
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclododecane+watMW_t=400ps_LR.jpg
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclododecane+watMW_t=50ps_LR.jpg
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclopentane.jpg
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclopentane_unrelaxed.jpg
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/for_visualization
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/watMW.jpg
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/README.sh
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/cyclododecane.lt
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/system.lt
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/trappe1998.lt
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/version_more_comments
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/version_more_comments/system.lt
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/watmw.lt
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.npt
Dtools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.nvt
Dtools/moltemplate/examples/README.TXT
Dtools/moltemplate/examples/all_atom_examples
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README.TXT
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README_setup.sh
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README_visualize.txt
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCell_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCrystal10x10x10_t=0steps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCrystal10x10x10_t=20000steps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/README.sh
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/al_cell.lt
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/system.lt
Dtools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/run.in
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_FIRST.TXT
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_lammps.sh
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_ltemplify.sh
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_moltemplate.sh
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_visualize.txt
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/cnad-cnt.data
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/cnad-cnt.in
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/cnad-cnt_after_rotate_copy.jpg
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/cnad-cnt_orig.jpg
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/cnad.jpg
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/cnt.jpg
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/for_visualization
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/for_visualization/psf_file_created_by_topotools/cnad-cnt_after_rotate_and_copy.psf
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/for_visualization/psf_file_created_by_topotools/cnad-cnt_orig.psf
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/run.in.nvt
Dtools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/system.lt
Dtools/moltemplate/examples/all_atom_examples/ice_crystal
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/README_run.sh
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/README_setup.sh
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/README_visualize.txt
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/images
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/images/ice_rect8_crystal_3x2x2_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/spce.lt
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/spce_ice_rect8.lt
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/system.lt
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/run.in.npt
Dtools/moltemplate/examples/all_atom_examples/ice_crystal/run.in.nvt
Dtools/moltemplate/examples/all_atom_examples/nanotube+water
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/README.TXT
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/README_run.sh
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/README_setup.sh
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/README_visualize.txt
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/for_visualization
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/graphene_unit_cell.jpg
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls+water_side_pbc_t=0ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls+water_side_pbc_t=108ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls+water_side_pbc_t=305ps_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls+water_top_nopbc_t=0_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls_side_nopbc_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/images/water_side_nopbc_LR.jpg
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/README.sh
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/graphene.lt
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/graphene_walls.lt
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/nanotube.lt
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/spce.lt
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/system.lt
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/water_box.lt
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/run.in.npt
Dtools/moltemplate/examples/all_atom_examples/nanotube+water/run.in.nvt
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README.TXT
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README_run.sh
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README_setup.sh
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README_visualize.txt
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/README.sh
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/solvate.pdb
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/spce.lt
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/system.lt
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.npt
Dtools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.nvt
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_run.sh
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_setup.sh
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_visualize.txt
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/Cl.jpg
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/Na.jpg
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/for_visualization
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/for_visualization/psf_file_created_by_topotools
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/for_visualization/psf_file_created_by_topotools/system.psf
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/wat.jpg
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/waterSPCE+Na+Cl_t=0.jpg
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/waterSPCE+Na+Cl_t=100ps.jpg
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/ions.lt
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/spce.lt
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/system.lt
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.npt
Dtools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.nvt
Dtools/moltemplate/examples/silly
Dtools/moltemplate/examples/silly/pyramids_vs_gravity
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/README.TXT
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/README_VMD_graphene.txt
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/README_setup.sh
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/README_visualize.txt
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/images
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=04800steps_LR.jpg
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=12200steps_LR.jpg
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=33000steps_LR.jpg
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/README.sh
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/graphene.lt
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/graphene_wall.lt
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/pyramids.lt
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/system.lt
Dtools/moltemplate/examples/silly/pyramids_vs_gravity/run.in
Dtools/moltemplate/examples/silly/sierpinski
Dtools/moltemplate/examples/silly/sierpinski/README.TXT
Dtools/moltemplate/examples/silly/sierpinski/README_setup.sh
Dtools/moltemplate/examples/silly/sierpinski/README_visualize.txt
Dtools/moltemplate/examples/silly/sierpinski/images
Dtools/moltemplate/examples/silly/sierpinski/images/AlCell_LR.jpg
Dtools/moltemplate/examples/silly/sierpinski/images/lvl1_LR.jpg
Dtools/moltemplate/examples/silly/sierpinski/images/lvl2_LR.jpg
Dtools/moltemplate/examples/silly/sierpinski/images/lvl3_LR.jpg
Dtools/moltemplate/examples/silly/sierpinski/images/serpinski_cube_lattice_8cells_t=0_zoom1_LR2.jpg
Dtools/moltemplate/examples/silly/sierpinski/images/serpinski_cube_lattice_8cells_t=7400_LR.jpg
Dtools/moltemplate/examples/silly/sierpinski/moltemplate_files
Dtools/moltemplate/examples/silly/sierpinski/moltemplate_files/al_cell.lt
Dtools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version
Dtools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/al_cell.lt
Dtools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/sierpinski_cubes.lt
Dtools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/system.lt
Dtools/moltemplate/examples/silly/sierpinski/moltemplate_files/sierpinski_cubes.lt
Dtools/moltemplate/examples/silly/sierpinski/moltemplate_files/system.lt
Dtools/moltemplate/examples/silly/sierpinski/run.in
Dtools/moltemplate/moltemplate_manual.pdf
Dtools/moltemplate/src
Dtools/moltemplate/src/extract_lammps_data.py
Dtools/moltemplate/src/ltemplify.py
Dtools/moltemplate/src/lttree.py
Dtools/moltemplate/src/lttree_check.py
Dtools/moltemplate/src/lttree_postprocess.py
Dtools/moltemplate/src/lttree_styles.py
Dtools/moltemplate/src/moltemplate.sh
Dtools/moltemplate/src/nbody_Angles.py
Dtools/moltemplate/src/nbody_Bonds.py
Dtools/moltemplate/src/nbody_Dihedrals.py
Dtools/moltemplate/src/nbody_Impropers.py
Dtools/moltemplate/src/nbody_by_type.py
Dtools/moltemplate/src/nbody_by_type_lib.py
Dtools/moltemplate/src/nbody_fix_ttree_assignments.py
Dtools/moltemplate/src/nbody_graph_search.py
Dtools/moltemplate/src/nbody_reorder_atoms.py
Dtools/moltemplate/src/ordereddict.py
Dtools/moltemplate/src/pdbsort.py
Dtools/moltemplate/src/postprocess_input_script.py
Dtools/moltemplate/src/remove_duplicate_atoms.py
Dtools/moltemplate/src/remove_duplicates_nbody.py
Dtools/moltemplate/src/renumber_DATA_first_column.py
Dtools/moltemplate/src/ttree.py
Dtools/moltemplate/src/ttree_lex.py
Dtools/moltemplate/src/ttree_matrix_stack.py
Dtools/moltemplate/src/ttree_render.py

rLAMMPSbbeddc892238

View Options

tools/moltemplate

Loading...
View Options

tools/moltemplate/LICENSE.TXT

Loading...
View Options

tools/moltemplate/README.TXT

Loading...
View Options

tools/moltemplate/common

Loading...
View Options

tools/moltemplate/common/graphene.lt

Loading...
View Options

tools/moltemplate/common/images

Loading...
View Options

tools/moltemplate/common/images/graphene_unit_cell.jpg

Loading...
View Options

tools/moltemplate/common/images/ice_rect8_unitcell.png

Loading...
View Options

tools/moltemplate/common/images/spce_ball_and_stick.jpg

Loading...
View Options

tools/moltemplate/common/spce.lt

Loading...
View Options

tools/moltemplate/common/spce_ice_rect8.lt

Loading...
View Options

tools/moltemplate/common/tip3p_attempts

Loading...
View Options

tools/moltemplate/common/tip3p_attempts/README.TXT

Loading...
View Options

tools/moltemplate/common/tip3p_attempts/tip3p2004.lt

Loading...
View Options

tools/moltemplate/common/tip3p_attempts/tip3pcharmm.lt

Loading...
View Options

tools/moltemplate/common/trappe1998.lt

Loading...
View Options

tools/moltemplate/common/watmw.lt

Loading...
View Options

tools/moltemplate/examples

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/4HelixOrig+Lipid2005_t=1290ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_no_pbc_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=0ps_top_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/images/membrane+protein_t=5000ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/1beadProtSci2010_variations.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/CGLipidBr2005.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/moltemplate_files/table_int.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.min

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.npt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane+protein/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DLPC.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=0ps_no_pbc_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC+DLPC_bilayer32x37_t=500ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/images/DPPC.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/CGLipidBr2005Orig.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/calc_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/version_charmm_cutoff

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/moltemplate_files/table_int.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.min

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.npt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/membrane_BranniganPRE2005/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/misfolded+chaperonin_t=0tau_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/images/unfolded+chaperonin_t=508750tau_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/1beadFrustrated_variants.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/chaperonin.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/generate_tables/calc_dihedral_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/moltemplate_files/table_dihedral_frustrated.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/run.in.min

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+chaperonin/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=0tau_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/images/protein2x2x2+minichaperones2x2x2_t=67500tau_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/1beadFrustrated_variants.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_chaperone_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/generate_tables/calc_dihedral_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/minichaperone.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_dihedral_frustrated.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.6.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/moltemplate_files/table_minichaperone_h=0.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/run.in.min

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated+minichaperone/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/initial_conformation_t=0tau.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/images/misfolded_conformation_t=1250tau.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/1beadFrustrated_variants.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/generate_tables/calc_dihedral_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/moltemplate_files/table_dihedral_frustrated.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/run.in.min

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/frustrated/run_short_sim.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=0tau_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/images/unfrustrated+chaperonin_t=105tau_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/1beadUnfrustrated_variants.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/chaperonin.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/generate_tables/calc_chaperone_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.475.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/moltemplate_files/table_chaperonin_h=0.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/run.in.min

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated+chaperonin/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/unfrustrated_t=0tau_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/images/unfrustrated_t=200tau_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/1beadUnfrustrated_variants.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/run.in.min

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1bead+chaperone/unfrustrated/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/4HelixBundle_t=0.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/4SheetBundle_t=0.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/1beadProtSci2010.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/README.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/charmm

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/charmm/1beadProtSci2010.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/class2

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/other_implementations/class2/1beadProtSci2010.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/run.in.min

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/protein_folding_examples/1beadProtSci2010/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/images

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/images/vesicle_hole_blackbk_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/1beadProtSci2010.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/1beadProtSci2010_variations.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/CGLipidBr2005.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/README.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/calc_CGLipidTableINTvsINT.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/version_charmm_cutoff

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/calc_table/version_charmm_cutoff/calc_table.py

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/moltemplate_files/table_int.dat

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/DLPC.xyz

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/DPPC.xyz

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/README.sh

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/protein.xyz

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step1_proteins.inp

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step2_innerlayer.inp

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/packmol_files/step3_outerlayer.inp

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/run.in.min

Loading...
View Options

tools/moltemplate/examples/CG_biomolecules/vesicle_PACKMOL/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_misc

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/images

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/2bead_heteropolymer_t=0.jpg

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/2bead_heteropolymer_t=1000ps.jpg

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/2bead.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/2bead_angles.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/README.sh

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/peptide.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/simplified_version_one_residue

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/simplified_version_one_residue/2bead_simple.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/2bead_heteropolymer/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/images

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/images/2bead.jpg

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/images/3bead.jpg

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/images/random_heteropolymer_t=0ps.jpg

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/images/random_heteropolymer_t=1ns.jpg

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files/monomers.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files/polymer.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/random_heteropolymer/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/images

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/images/walls+solvent+polymer_t=0.jpg

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files/monomer.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files/polymer.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files/solvent.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files/solvent_single.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files/wall_single.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/moltemplate_files/walls.lt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/run.in.npt

Loading...
View Options

tools/moltemplate/examples/CG_misc/translocation/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/CG_solvent

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README.TXT

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_run.sh

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclododecane+watMW_t=0ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclododecane+watMW_t=400ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclododecane+watMW_t=50ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclopentane.jpg

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/cyclopentane_unrelaxed.jpg

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/images/watMW.jpg

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/README.sh

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/cyclododecane.lt

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/trappe1998.lt

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/version_more_comments

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/version_more_comments/system.lt

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/moltemplate_files/watmw.lt

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.npt

Loading...
View Options

tools/moltemplate/examples/CG_solvent/cyclododecane+watMW/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/README.TXT

Loading...
View Options

tools/moltemplate/examples/all_atom_examples

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README.TXT

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCell_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCrystal10x10x10_t=0steps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/images/AlCrystal10x10x10_t=20000steps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/README.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/al_cell.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/aluminum_crystal_strain/run.in

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_FIRST.TXT

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_lammps.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_ltemplify.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_run_moltemplate.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/cnad-cnt.data

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/cnad-cnt.in

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/cnad-cnt_after_rotate_copy.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/cnad-cnt_orig.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/cnad.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/cnt.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/for_visualization/psf_file_created_by_topotools/cnad-cnt_after_rotate_and_copy.psf

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/images/for_visualization/psf_file_created_by_topotools/cnad-cnt_orig.psf

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/convert_LAMMPS_to_LT_examples/cnad-cnt/system.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/README_run.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/images

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/images/ice_rect8_crystal_3x2x2_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/spce.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/spce_ice_rect8.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/run.in.npt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/ice_crystal/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/README.TXT

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/README_run.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/graphene_unit_cell.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls+water_side_pbc_t=0ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls+water_side_pbc_t=108ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls+water_side_pbc_t=305ps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls+water_top_nopbc_t=0_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/nanotube+walls_side_nopbc_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/images/water_side_nopbc_LR.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/README.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/graphene.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/graphene_walls.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/nanotube.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/spce.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/moltemplate_files/water_box.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/run.in.npt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/nanotube+water/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README.TXT

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README_run.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/README.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/solvate.pdb

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/spce.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.npt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/read_PDB_file_examples/waterSPCE_from_PDBfile/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_run.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/Cl.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/Na.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/for_visualization

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/for_visualization/psf_file_created_by_topotools

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/for_visualization/psf_file_created_by_topotools/system.psf

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/wat.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/waterSPCE+Na+Cl_t=0.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/images/waterSPCE+Na+Cl_t=100ps.jpg

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/ions.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/spce.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.npt

Loading...
View Options

tools/moltemplate/examples/all_atom_examples/waterSPCE+Na+Cl/run.in.nvt

Loading...
View Options

tools/moltemplate/examples/silly

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/README.TXT

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/README_VMD_graphene.txt

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/images

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=04800steps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=12200steps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/images/pyramids_vs_gravity_t=33000steps_LR.jpg

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/README.sh

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/graphene.lt

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/graphene_wall.lt

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/pyramids.lt

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/silly/pyramids_vs_gravity/run.in

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/README.TXT

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/README_setup.sh

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/README_visualize.txt

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/images

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/images/AlCell_LR.jpg

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/images/lvl1_LR.jpg

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/images/lvl2_LR.jpg

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/images/lvl3_LR.jpg

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/images/serpinski_cube_lattice_8cells_t=0_zoom1_LR2.jpg

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/images/serpinski_cube_lattice_8cells_t=7400_LR.jpg

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/al_cell.lt

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/al_cell.lt

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/sierpinski_cubes.lt

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/elegant_inefficient_version/system.lt

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/sierpinski_cubes.lt

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/moltemplate_files/system.lt

Loading...
View Options

tools/moltemplate/examples/silly/sierpinski/run.in

Loading...
View Options

tools/moltemplate/moltemplate_manual.pdf

Loading...
View Options

tools/moltemplate/src

Loading...
View Options

tools/moltemplate/src/extract_lammps_data.py

Loading...
View Options

tools/moltemplate/src/ltemplify.py

Loading...
View Options

tools/moltemplate/src/lttree.py

Loading...
View Options

tools/moltemplate/src/lttree_check.py

Loading...
View Options

tools/moltemplate/src/lttree_postprocess.py

Loading...
View Options

tools/moltemplate/src/lttree_styles.py

Loading...
View Options

tools/moltemplate/src/moltemplate.sh

Loading...
View Options

tools/moltemplate/src/nbody_Angles.py

Loading...
View Options

tools/moltemplate/src/nbody_Bonds.py

Loading...
View Options

tools/moltemplate/src/nbody_Dihedrals.py

Loading...
View Options

tools/moltemplate/src/nbody_Impropers.py

Loading...
View Options

tools/moltemplate/src/nbody_by_type.py

Loading...
View Options

tools/moltemplate/src/nbody_by_type_lib.py

Loading...
View Options

tools/moltemplate/src/nbody_fix_ttree_assignments.py

Loading...
View Options

tools/moltemplate/src/nbody_graph_search.py

Loading...
View Options

tools/moltemplate/src/nbody_reorder_atoms.py

Loading...
View Options

tools/moltemplate/src/ordereddict.py

Loading...
View Options

tools/moltemplate/src/pdbsort.py

Loading...
View Options

tools/moltemplate/src/postprocess_input_script.py

Loading...
View Options

tools/moltemplate/src/remove_duplicate_atoms.py

Loading...
View Options

tools/moltemplate/src/remove_duplicates_nbody.py

Loading...
View Options

tools/moltemplate/src/renumber_DATA_first_column.py

Loading...
View Options

tools/moltemplate/src/ttree.py

Loading...
View Options

tools/moltemplate/src/ttree_lex.py

Loading...
View Options

tools/moltemplate/src/ttree_matrix_stack.py

Loading...
View Options

tools/moltemplate/src/ttree_render.py

Loading...
c4science · Help