diff --git a/doc/src/lammps.book b/doc/src/lammps.book index 86dfe78af..b74ec49ae 100644 --- a/doc/src/lammps.book +++ b/doc/src/lammps.book @@ -1,653 +1,654 @@ #HTMLDOC 1.8.27 -t pdf14 -f "../Manual.pdf" --book --toclevels 4 --no-numbered --toctitle "Table of Contents" --title --textcolor #000000 --linkcolor #0000ff --linkstyle plain --bodycolor #ffffff --size Universal --left 1.00in --right 0.50in --top 0.50in --bottom 0.50in --header .t. --header1 ... --footer ..1 --nup 1 --tocheader .t. --tocfooter ..i --portrait --color --no-pscommands --no-xrxcomments --compression=1 --jpeg=0 --fontsize 11.0 --fontspacing 1.2 --headingfont helvetica --bodyfont times --headfootsize 11.0 --headfootfont helvetica --charset iso-8859-1 --links --embedfonts --pagemode document --pagelayout single --firstpage c1 --pageeffect none --pageduration 10 --effectduration 1.0 --no-encryption --permissions all --owner-password "" --user-password "" --browserwidth 680 --no-strict --no-overflow Manual.html Section_intro.html Section_start.html Section_commands.html Section_packages.html Section_accelerate.html accelerate_gpu.html accelerate_intel.html accelerate_kokkos.html accelerate_omp.html accelerate_opt.html Section_howto.html Section_example.html Section_perf.html Section_tools.html Section_modify.html Section_python.html Section_errors.html Section_history.html tutorial_bash_on_windows.html tutorial_drude.html tutorial_github.html tutorial_pylammps.html body.html manifolds.html angle_coeff.html angle_style.html atom_modify.html atom_style.html balance.html bond_coeff.html bond_style.html bond_write.html boundary.html box.html change_box.html clear.html comm_modify.html comm_style.html compute.html compute_modify.html create_atoms.html create_bonds.html create_box.html delete_atoms.html delete_bonds.html dielectric.html dihedral_coeff.html dihedral_style.html dimension.html displace_atoms.html dump.html dump_h5md.html dump_image.html dump_modify.html dump_molfile.html dump_netcdf.html dump_vtk.html echo.html fix.html fix_modify.html group.html group2ndx.html if.html improper_coeff.html improper_style.html include.html info.html jump.html kspace_modify.html kspace_style.html label.html lattice.html log.html mass.html min_modify.html min_style.html minimize.html molecule.html neb.html neigh_modify.html neighbor.html newton.html next.html package.html pair_coeff.html pair_modify.html pair_style.html pair_write.html partition.html prd.html print.html processors.html python.html quit.html read_data.html read_dump.html read_restart.html region.html replicate.html rerun.html reset_timestep.html restart.html run.html run_style.html set.html shell.html special_bonds.html suffix.html tad.html temper.html temper_grem.html temper_npt.html thermo.html thermo_modify.html thermo_style.html timer.html timestep.html uncompute.html undump.html unfix.html units.html variable.html velocity.html write_coeff.html write_data.html write_dump.html write_restart.html fix_adapt.html fix_adapt_fep.html fix_addforce.html fix_addtorque.html fix_append_atoms.html fix_atc.html fix_atom_swap.html fix_ave_atom.html fix_ave_chunk.html fix_ave_correlate.html fix_ave_correlate_long.html fix_ave_histo.html fix_ave_time.html fix_aveforce.html fix_balance.html fix_bond_break.html fix_bond_create.html fix_bond_swap.html fix_box_relax.html fix_cmap.html fix_colvars.html fix_controller.html fix_deform.html fix_deposit.html fix_dpd_energy.html fix_dpd_source.html fix_drag.html fix_drude.html fix_drude_transform.html fix_dt_reset.html fix_efield.html fix_ehex.html fix_enforce2d.html fix_eos_cv.html fix_eos_table.html fix_eos_table_rx.html fix_evaporate.html fix_external.html fix_filter_corotate.html fix_flow_gauss.html fix_freeze.html fix_gcmc.html fix_gld.html fix_gle.html fix_gravity.html fix_grem.html fix_halt.html fix_heat.html fix_imd.html fix_indent.html fix_ipi.html fix_langevin.html fix_langevin_drude.html fix_langevin_eff.html +fix_latte.html fix_lb_fluid.html fix_lb_momentum.html fix_lb_pc.html fix_lb_rigid_pc_sphere.html fix_lb_viscous.html fix_lineforce.html fix_manifoldforce.html fix_meso.html fix_meso_stationary.html fix_momentum.html fix_move.html fix_mscg.html fix_msst.html fix_mvv_dpd.html fix_neb.html fix_nh.html fix_nh_eff.html fix_nph_asphere.html fix_nph_body.html fix_nph_sphere.html fix_nphug.html fix_npt_asphere.html fix_npt_body.html fix_npt_sphere.html fix_nve.html fix_nve_asphere.html fix_nve_asphere_noforce.html fix_nve_body.html fix_nve_dot.html fix_nve_dotc_langevin.html fix_nve_eff.html fix_nve_limit.html fix_nve_line.html fix_nve_manifold_rattle.html fix_nve_noforce.html fix_nve_sphere.html fix_nve_tri.html fix_nvk.html fix_nvt_asphere.html fix_nvt_body.html fix_nvt_manifold_rattle.html fix_nvt_sllod.html fix_nvt_sllod_eff.html fix_nvt_sphere.html fix_oneway.html fix_orient.html fix_phonon.html fix_pimd.html fix_planeforce.html fix_poems.html fix_pour.html fix_press_berendsen.html fix_print.html fix_property_atom.html fix_python.html fix_qbmsst.html fix_qeq.html fix_qeq_comb.html fix_qeq_reax.html fix_qmmm.html fix_qtb.html fix_reax_bonds.html fix_reaxc_species.html fix_recenter.html fix_restrain.html fix_rigid.html fix_rx.html fix_saed_vtk.html fix_setforce.html fix_shake.html fix_shardlow.html fix_smd.html fix_smd_adjust_dt.html fix_smd_integrate_tlsph.html fix_smd_integrate_ulsph.html fix_smd_move_triangulated_surface.html fix_smd_setvel.html fix_smd_wall_surface.html fix_spring.html fix_spring_chunk.html fix_spring_rg.html fix_spring_self.html fix_srd.html fix_store_force.html fix_store_state.html fix_temp_berendsen.html fix_temp_csvr.html fix_temp_rescale.html fix_temp_rescale_eff.html fix_tfmc.html fix_thermal_conductivity.html fix_ti_spring.html fix_tmd.html fix_ttm.html fix_tune_kspace.html fix_vector.html fix_viscosity.html fix_viscous.html fix_wall.html fix_wall_ees.html fix_wall_gran.html fix_wall_gran_region.html fix_wall_piston.html fix_wall_reflect.html fix_wall_region.html fix_wall_srd.html compute_ackland_atom.html compute_angle.html compute_angle_local.html compute_angmom_chunk.html compute_basal_atom.html compute_body_local.html compute_bond.html compute_bond_local.html compute_centro_atom.html compute_chunk_atom.html compute_cluster_atom.html compute_cna_atom.html compute_cnp_atom.html compute_com.html compute_com_chunk.html compute_contact_atom.html compute_coord_atom.html compute_damage_atom.html compute_dihedral.html compute_dihedral_local.html compute_dilatation_atom.html compute_dipole_chunk.html compute_displace_atom.html compute_dpd.html compute_dpd_atom.html compute_edpd_temp_atom.html compute_erotate_asphere.html compute_erotate_rigid.html compute_erotate_sphere.html compute_erotate_sphere_atom.html compute_event_displace.html compute_fep.html compute_global_atom.html compute_group_group.html compute_gyration.html compute_gyration_chunk.html compute_heat_flux.html compute_hexorder_atom.html compute_improper.html compute_improper_local.html compute_inertia_chunk.html compute_ke.html compute_ke_atom.html compute_ke_atom_eff.html compute_ke_eff.html compute_ke_rigid.html compute_meso_e_atom.html compute_meso_rho_atom.html compute_meso_t_atom.html compute_msd.html compute_msd_chunk.html compute_msd_nongauss.html compute_omega_chunk.html compute_orientorder_atom.html compute_pair.html compute_pair_local.html compute_pe.html compute_pe_atom.html compute_plasticity_atom.html compute_pressure.html compute_property_atom.html compute_property_chunk.html compute_property_local.html compute_rdf.html compute_reduce.html compute_rigid_local.html compute_saed.html compute_slice.html compute_smd_contact_radius.html compute_smd_damage.html compute_smd_hourglass_error.html compute_smd_internal_energy.html compute_smd_plastic_strain.html compute_smd_plastic_strain_rate.html compute_smd_rho.html compute_smd_tlsph_defgrad.html compute_smd_tlsph_dt.html compute_smd_tlsph_num_neighs.html compute_smd_tlsph_shape.html compute_smd_tlsph_strain.html compute_smd_tlsph_strain_rate.html compute_smd_tlsph_stress.html compute_smd_triangle_mesh_vertices.html compute_smd_ulsph_num_neighs.html compute_smd_ulsph_strain.html compute_smd_ulsph_strain_rate.html compute_smd_ulsph_stress.html compute_smd_vol.html compute_sna_atom.html compute_stress_atom.html compute_tally.html compute_tdpd_cc_atom.html compute_temp.html compute_temp_asphere.html compute_temp_body.html compute_temp_chunk.html compute_temp_com.html compute_temp_cs.html compute_temp_deform.html compute_temp_deform_eff.html compute_temp_drude.html compute_temp_eff.html compute_temp_partial.html compute_temp_profile.html compute_temp_ramp.html compute_temp_region.html compute_temp_region_eff.html compute_temp_rotate.html compute_temp_sphere.html compute_ti.html compute_torque_chunk.html compute_vacf.html compute_vcm_chunk.html compute_voronoi_atom.html compute_xrd.html pair_adp.html pair_agni.html pair_airebo.html pair_awpmd.html pair_beck.html pair_body.html pair_bop.html pair_born.html pair_brownian.html pair_buck.html pair_buck_long.html pair_charmm.html pair_class2.html pair_colloid.html pair_comb.html pair_coul.html pair_coul_diel.html pair_cs.html pair_dipole.html pair_dpd.html pair_dpd_fdt.html pair_dsmc.html pair_eam.html pair_edip.html pair_eff.html pair_eim.html pair_exp6_rx.html pair_gauss.html pair_gayberne.html pair_gran.html pair_gromacs.html pair_gw.html pair_hbond_dreiding.html pair_hybrid.html pair_kim.html pair_kolmogorov_crespi_z.html pair_lcbop.html pair_line_lj.html pair_list.html pair_lj.html pair_lj96.html pair_lj_cubic.html pair_lj_expand.html pair_lj_long.html pair_lj_smooth.html pair_lj_smooth_linear.html pair_lj_soft.html pair_lubricate.html pair_lubricateU.html pair_mdf.html pair_meam.html pair_meam_spline.html pair_meam_sw_spline.html pair_meso.html pair_mgpt.html pair_mie.html pair_momb.html pair_morse.html pair_multi_lucy.html pair_multi_lucy_rx.html pair_nb3b_harmonic.html pair_nm.html pair_none.html pair_oxdna.html pair_oxdna2.html pair_peri.html pair_polymorphic.html pair_python.html pair_quip.html pair_reax.html pair_reaxc.html pair_resquared.html pair_sdk.html pair_smd_hertz.html pair_smd_tlsph.html pair_smd_triangulated_surface.html pair_smd_ulsph.html pair_smtbq.html pair_snap.html pair_soft.html pair_sph_heatconduction.html pair_sph_idealgas.html pair_sph_lj.html pair_sph_rhosum.html pair_sph_taitwater.html pair_sph_taitwater_morris.html pair_srp.html pair_sw.html pair_table.html pair_table_rx.html pair_tersoff.html pair_tersoff_mod.html pair_tersoff_zbl.html pair_thole.html pair_tri_lj.html pair_vashishta.html pair_yukawa.html pair_yukawa_colloid.html pair_zbl.html pair_zero.html bond_class2.html bond_fene.html bond_fene_expand.html bond_oxdna.html bond_harmonic.html bond_harmonic_shift.html bond_harmonic_shift_cut.html bond_hybrid.html bond_morse.html bond_none.html bond_nonlinear.html bond_quartic.html bond_table.html bond_zero.html angle_charmm.html angle_class2.html angle_cosine.html angle_cosine_delta.html angle_cosine_periodic.html angle_cosine_shift.html angle_cosine_shift_exp.html angle_cosine_squared.html angle_dipole.html angle_fourier.html angle_fourier_simple.html angle_harmonic.html angle_hybrid.html angle_none.html angle_quartic.html angle_sdk.html angle_table.html angle_zero.html dihedral_charmm.html dihedral_class2.html dihedral_cosine_shift_exp.html dihedral_fourier.html dihedral_harmonic.html dihedral_helix.html dihedral_hybrid.html dihedral_multi_harmonic.html dihedral_nharmonic.html dihedral_none.html dihedral_opls.html dihedral_quadratic.html dihedral_spherical.html dihedral_table.html dihedral_zero.html improper_class2.html improper_cossq.html improper_cvff.html improper_distance.html improper_fourier.html improper_harmonic.html improper_hybrid.html improper_none.html improper_ring.html improper_umbrella.html improper_zero.html USER/atc/man_add_molecule.html USER/atc/man_add_species.html 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USER/atc/man_hardy_rates.html USER/atc/man_initial.html USER/atc/man_internal_atom_integrate.html USER/atc/man_internal_element_set.html USER/atc/man_internal_quadrature.html USER/atc/man_kernel_function.html USER/atc/man_localized_lambda.html USER/atc/man_lumped_lambda_solve.html USER/atc/man_mask_direction.html USER/atc/man_mass_matrix.html USER/atc/man_material.html USER/atc/man_mesh_add_to_nodeset.html USER/atc/man_mesh_create.html USER/atc/man_mesh_create_elementset.html USER/atc/man_mesh_create_faceset_box.html USER/atc/man_mesh_create_faceset_plane.html USER/atc/man_mesh_create_nodeset.html USER/atc/man_mesh_delete_elements.html USER/atc/man_mesh_nodeset_to_elementset.html USER/atc/man_mesh_output.html USER/atc/man_mesh_quadrature.html USER/atc/man_mesh_read.html USER/atc/man_mesh_write.html USER/atc/man_momentum_time_integration.html USER/atc/man_output.html USER/atc/man_output_elementset.html USER/atc/man_output_nodeset.html USER/atc/man_pair_interactions.html USER/atc/man_poisson_solver.html USER/atc/man_read_restart.html USER/atc/man_remove_molecule.html USER/atc/man_remove_source.html USER/atc/man_remove_species.html USER/atc/man_reset_atomic_reference_positions.html USER/atc/man_reset_time.html USER/atc/man_sample_frequency.html USER/atc/man_set.html USER/atc/man_source.html USER/atc/man_source_integration.html USER/atc/man_temperature_definition.html USER/atc/man_thermal_time_integration.html USER/atc/man_time_filter.html USER/atc/man_track_displacement.html USER/atc/man_unfix_flux.html USER/atc/man_unfix_nodes.html USER/atc/man_write_atom_weights.html USER/atc/man_write_restart.html