Diffusion SpecMiCP / ReactMiCP 235eaf0b5b35

license: modify license to include year 2016
235eaf0b5b35
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Authored by fabien on Jan 3 2016, 00:04.

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license: modify license to include year 2016

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fabien

Jan 3 2016, 00:04

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rSPECMICP44a71fbb0cc7: srctools: small script to change license of cpp files

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fabien committed rSPECMICP235eaf0b5b35: license: modify license to include year 2016 (authored by fabien).Jan 3 2016, 00:04

Changes (287)

				Path
	M			COPYING
	M			examples/reactmicp/equilibrium_curve.cpp
	M			examples/reactmicp/saturated_react/carbonation.cpp
	M			examples/reactmicp/saturated_react/carbonationfe.cpp
	M			examples/reactmicp/saturated_react/leaching_kinetic.cpp
	M			examples/reactmicp/saturated_react/momas_benchmark.cpp
	M			examples/reactmicp/saturated_react/react_leaching.cpp
	M			examples/reactmicp/unsaturated/acc_carbo.cpp
	M			examples/reactmicp/unsaturated/drying.cpp
	M			examples/specmicp/adimensional/carbofe.cpp
	M			examples/specmicp/adimensional/equilibrium_curve.cpp
	M			examples/specmicp/adimensional/momas_thermo.cpp
	M			examples/specmicp/adimensional/thermocarbo.cpp
	M			src/bin/specmicp/specmicp.cpp
	M			src/database.hpp
	M			src/database/appender.cpp
	M			src/database/appender.hpp
	M			src/database/aqueous_selector.cpp
	M			src/database/aqueous_selector.hpp
	M			src/database/config_database.hpp
	M			src/database/data_container.cpp
	M			src/database/data_container.hpp
	M			src/database/database.cpp
	M			src/database/database.hpp
	M			src/database/database_fwd.hpp
	M			src/database/database_holder.hpp
	M			src/database/errors.hpp
	M			src/database/io/configuration.cpp
	M			src/database/io/configuration.hpp
	M			src/database/io/hdf5_database.cpp
	M			src/database/io/hdf5_database.hpp
	M			src/database/mineral_selector.cpp
	M			src/database/mineral_selector.hpp
	M			src/database/module.cpp
	M			src/database/module.hpp
	M			src/database/oxydo_selector.cpp
	M			src/database/oxydo_selector.hpp
	M			src/database/reader_common.cpp
	M			src/database/reader_common.hpp
	M			src/database/section_name.hpp
	M			src/database/selector.cpp
	M			src/database/selector.hpp
	M			src/database/species/aqueous_list.hpp
	M			src/database/species/base_wrapper.cpp
	M			src/database/species/base_wrapper.hpp
	M			src/database/species/component_list.hpp
	M			src/database/species/compounds_list.cpp
	M			src/database/species/compounds_list.hpp
	M			src/database/species/element_list.cpp
	M			src/database/species/element_list.hpp
	M			src/database/species/gas_list.cpp
	M			src/database/species/gas_list.hpp
	M			src/database/species/ionic_parameters.hpp
	M			src/database/species/mineral_list.cpp
	M			src/database/species/mineral_list.hpp
	M			src/database/species/sorbed_list.cpp
	M			src/database/species/sorbed_list.hpp
	M			src/database/species/species.cpp
	M			src/database/species/species.hpp
	M			src/database/switch_basis.cpp
	M			src/database/switch_basis.hpp
	M			src/database/unknown_class.cpp
	M			src/database/unknown_class.hpp
	M			src/database/yaml_reader.cpp
	M			src/database/yaml_reader.hpp
	M			src/database/yaml_writer.cpp
	M			src/database/yaml_writer.hpp
	M			src/dfpm/1dtransport/diffusion.cpp
	M			src/dfpm/1dtransport/diffusion.hpp
	M			src/dfpm/1dtransport/diffusion_parameters.hpp
	M			src/dfpm/io/configuration.cpp
	M			src/dfpm/io/configuration.hpp
	M			src/dfpm/io/hdf5_mesh.cpp
	M			src/dfpm/io/hdf5_mesh.hpp
	M			src/dfpm/io/meshes.cpp
	M			src/dfpm/io/meshes.hpp
	M			src/dfpm/mesh.hpp
	M			src/dfpm/meshes/axisymmetric_mesh1d.cpp
	M			src/dfpm/meshes/axisymmetric_mesh1d.hpp
	M			src/dfpm/meshes/axisymmetric_uniform_mesh1d.hpp
	M			src/dfpm/meshes/generic_mesh1d.cpp
	M			src/dfpm/meshes/generic_mesh1d.hpp
	M			src/dfpm/meshes/mesh1d.hpp
	M			src/dfpm/meshes/mesh1dfwd.hpp
	M			src/dfpm/meshes/uniform_mesh1d.hpp
	M			src/dfpm/types.hpp
	M			src/dfpmsolver/dfpm_program.hpp
	M			src/dfpmsolver/driver.hpp
	M			src/dfpmsolver/driver.inl
	M			src/dfpmsolver/driver_structs.hpp
	M			src/dfpmsolver/parabolic_driver.hpp
	M			src/dfpmsolver/parabolic_driver.inl
	M			src/dfpmsolver/parabolic_program.hpp
	M			src/dfpmsolver/parabolic_structs.hpp
	M			src/macros.hpp
	M			src/micpsolver/estimate_cond_number.hpp
	M			src/micpsolver/micpprog.hpp
	M			src/micpsolver/micpsolver.hpp
	M			src/micpsolver/micpsolver.inl
	M			src/micpsolver/micpsolver_base.hpp
	M			src/micpsolver/micpsolver_base.inl
	M			src/micpsolver/micpsolver_min.hpp
	M			src/micpsolver/micpsolver_min.inl
	M			src/micpsolver/micpsolver_structs.hpp
	M			src/micpsolver/micpsolverold.hpp
	M			src/micpsolver/micpsolverold.inl
	M			src/micpsolver/ncp_function.hpp
	M			src/odeint/butcher_tableau.hpp
	M			src/odeint/odeint_types.hpp
	M			src/odeint/runge_kutta_step.hpp
	M			src/odeint/runge_kutta_step.inl
	M			src/odeint/runge_kutta_step_structs.hpp
	M			src/physics/constants.hpp
	M			src/physics/io/units.cpp
	M			src/physics/io/units.hpp
	M			src/physics/laws.cpp
	M			src/physics/laws.hpp
	M			src/physics/maths.hpp
	M			src/physics/units.cpp
	M			src/physics/units.hpp
	M			src/physics/unsaturated_laws.cpp
	M			src/physics/unsaturated_laws.hpp
	M			src/reactmicp.hpp
	M			src/reactmicp/equilibrium_curve/chemistry.cpp
	M			src/reactmicp/equilibrium_curve/chemistry.hpp
	M			src/reactmicp/equilibrium_curve/eqcurve_coupler.cpp
	M			src/reactmicp/equilibrium_curve/eqcurve_coupler.hpp
	M			src/reactmicp/equilibrium_curve/eqcurve_extractor.cpp
	M			src/reactmicp/equilibrium_curve/eqcurve_extractor.hpp
	M			src/reactmicp/equilibrium_curve/eqcurve_solid_transport.cpp
	M			src/reactmicp/equilibrium_curve/eqcurve_solid_transport.hpp
	M			src/reactmicp/io/configuration.cpp
	M			src/reactmicp/io/configuration.hpp
	M			src/reactmicp/io/hdf5_unsaturated.cpp
	M			src/reactmicp/io/hdf5_unsaturated.hpp
	M			src/reactmicp/io/reactive_transport.cpp
	M			src/reactmicp/io/reactive_transport.hpp
	M			src/reactmicp/io/saturated_react.cpp
	M			src/reactmicp/io/saturated_react.hpp
	M			src/reactmicp/solver/reactive_transport_solver.cpp
	M			src/reactmicp/solver/reactive_transport_solver.hpp
	M			src/reactmicp/solver/reactive_transport_solver_structs.hpp
	M			src/reactmicp/solver/runner.cpp
	M			src/reactmicp/solver/runner.hpp
	M			src/reactmicp/solver/staggers_base/chemistry_stagger_base.hpp
	M			src/reactmicp/solver/staggers_base/decl.inl
	M			src/reactmicp/solver/staggers_base/stagger_structs.hpp
	M			src/reactmicp/solver/staggers_base/staggers_base.hpp
	M			src/reactmicp/solver/staggers_base/transport_stagger_base.hpp
	M			src/reactmicp/solver/staggers_base/upscaling_stagger_base.hpp
	M			src/reactmicp/solver/staggers_base/variables_base.hpp
	M			src/reactmicp/solver/timestepper.cpp
	M			src/reactmicp/solver/timestepper.hpp
	M			src/reactmicp/systems/saturated_react/diffusive_upscaling_stagger.cpp
	M			src/reactmicp/systems/saturated_react/diffusive_upscaling_stagger.hpp
	M			src/reactmicp/systems/saturated_react/equilibrium_stagger.cpp
	M			src/reactmicp/systems/saturated_react/equilibrium_stagger.hpp
	M			src/reactmicp/systems/saturated_react/init_variables.cpp
	M			src/reactmicp/systems/saturated_react/init_variables.hpp
	M			src/reactmicp/systems/saturated_react/kinetic_stagger.cpp
	M			src/reactmicp/systems/saturated_react/kinetic_stagger.hpp
	M			src/reactmicp/systems/saturated_react/react_solver.cpp
	M			src/reactmicp/systems/saturated_react/react_solver.hpp
	M			src/reactmicp/systems/saturated_react/transport_program.cpp
	M			src/reactmicp/systems/saturated_react/transport_program.hpp
	M			src/reactmicp/systems/saturated_react/transport_stagger.cpp
	M			src/reactmicp/systems/saturated_react/transport_stagger.hpp
	M			src/reactmicp/systems/saturated_react/variables.cpp
	M			src/reactmicp/systems/saturated_react/variables.hpp
	M			src/reactmicp/systems/saturated_react/variablesfwd.hpp
	M			src/reactmicp/systems/unsaturated/aqueous_equation.cpp
	M			src/reactmicp/systems/unsaturated/aqueous_equation.hpp
	M			src/reactmicp/systems/unsaturated/aqueous_pressure_equation.cpp
	M			src/reactmicp/systems/unsaturated/aqueous_pressure_equation.hpp
	M			src/reactmicp/systems/unsaturated/equilibrium_constraints.cpp
	M			src/reactmicp/systems/unsaturated/equilibrium_constraints.hpp
	M			src/reactmicp/systems/unsaturated/equilibrium_stagger.cpp
	M			src/reactmicp/systems/unsaturated/equilibrium_stagger.hpp
	M			src/reactmicp/systems/unsaturated/fv_1dof_equation.hpp
	M			src/reactmicp/systems/unsaturated/fv_1dof_equation.inl
	M			src/reactmicp/systems/unsaturated/pressure_equation.cpp
	M			src/reactmicp/systems/unsaturated/pressure_equation.hpp
	M			src/reactmicp/systems/unsaturated/saturation_equation.cpp
	M			src/reactmicp/systems/unsaturated/saturation_equation.hpp
	M			src/reactmicp/systems/unsaturated/saturation_pressure_equation.cpp
	M			src/reactmicp/systems/unsaturated/saturation_pressure_equation.hpp
	M			src/reactmicp/systems/unsaturated/transport_constraints.hpp
	M			src/reactmicp/systems/unsaturated/transport_stagger.cpp
	M			src/reactmicp/systems/unsaturated/transport_stagger.hpp
	M			src/reactmicp/systems/unsaturated/types_fwd.hpp
	M			src/reactmicp/systems/unsaturated/variables.cpp
	M			src/reactmicp/systems/unsaturated/variables.hpp
	M			src/reactmicp/systems/unsaturated/variables_box.hpp
	M			src/reactmicp/systems/unsaturated/variables_interface.cpp
	M			src/reactmicp/systems/unsaturated/variables_interface.hpp
	M			src/reactmicp/systems/unsaturated/variables_sub.hpp
	M			src/reactmicp_core.hpp
	M			src/reactmicp_saturated.hpp
	M			src/reactmicp_unsaturated.hpp
	M			src/specmicp.hpp
	M			src/specmicp/adimensional/adimensional_system.cpp
	M			src/specmicp/adimensional/adimensional_system.hpp
	M			src/specmicp/adimensional/adimensional_system_numbering.hpp
	M			src/specmicp/adimensional/adimensional_system_pcfm.cpp
	M			src/specmicp/adimensional/adimensional_system_pcfm.hpp
	M			src/specmicp/adimensional/adimensional_system_pcfm_structs.hpp
	M			src/specmicp/adimensional/adimensional_system_solution.hpp
	M			src/specmicp/adimensional/adimensional_system_solution_extractor.cpp
	M			src/specmicp/adimensional/adimensional_system_solution_extractor.hpp
	M			src/specmicp/adimensional/adimensional_system_solution_saver.cpp
	M			src/specmicp/adimensional/adimensional_system_solution_saver.hpp
	M			src/specmicp/adimensional/adimensional_system_solver.cpp
	M			src/specmicp/adimensional/adimensional_system_solver.hpp
	M			src/specmicp/adimensional/adimensional_system_solver_structs.cpp
	M			src/specmicp/adimensional/adimensional_system_solver_structs.hpp
	M			src/specmicp/adimensional/adimensional_system_structs.hpp
	M			src/specmicp/adimensional/config_default_options_solver.h
	M			src/specmicp/adimensional/config_solution_output_format.h
	M			src/specmicp/adimensional/equilibrium_curve.cpp
	M			src/specmicp/adimensional/equilibrium_curve.hpp
	M			src/specmicp/adimensional_kinetics/kinetic_model.hpp
	M			src/specmicp/adimensional_kinetics/kinetic_system.cpp
	M			src/specmicp/adimensional_kinetics/kinetic_system.hpp
	M			src/specmicp/adimensional_kinetics/kinetic_system_euler_solver.cpp
	M			src/specmicp/adimensional_kinetics/kinetic_system_euler_solver.hpp
	M			src/specmicp/adimensional_kinetics/kinetic_system_solver.cpp
	M			src/specmicp/adimensional_kinetics/kinetic_system_solver.hpp
	M			src/specmicp/adimensional_kinetics/kinetic_system_solver_structs.hpp
	M			src/specmicp/adimensional_kinetics/kinetic_variables.hpp
	M			src/specmicp/io/configuration.cpp
	M			src/specmicp/io/configuration.hpp
	M			src/specmicp/io/hdf5_adimensional.cpp
	M			src/specmicp/io/hdf5_adimensional.hpp
	M			src/specmicp/io/print.cpp
	M			src/specmicp/io/print.hpp
	M			src/specmicp/problem_solver/dissolver.cpp
	M			src/specmicp/problem_solver/dissolver.hpp
	M			src/specmicp/problem_solver/formulation.hpp
	M			src/types.hpp
	M			src/utils/cli/parser.cpp
	M			src/utils/cli/parser.hpp
	M			src/utils/compat.hpp
	M			src/utils/dateandtime.cpp
	M			src/utils/dateandtime.hpp
	M			src/utils/io/csv_formatter.cpp
	M			src/utils/io/csv_formatter.hpp
	M			src/utils/io/format.cpp
	M			src/utils/io/format.hpp
	M			src/utils/io/hdf5_eigen.hpp
	M			src/utils/io/hdf5_eigen.inl
	M			src/utils/io/specmicp_hdf5.cpp
	M			src/utils/io/specmicp_hdf5.hpp
	M			src/utils/io/yaml.cpp
	M			src/utils/io/yaml.hpp
	M			src/utils/log.cpp
	M			src/utils/log.hpp
	M			src/utils/moving_average.cpp
	M			src/utils/moving_average.hpp
	M			src/utils/options_handler.hpp
	M			src/utils/perfs_handler.hpp
	M			src/utils/pimpl_ptr.hpp
	M			src/utils/plugins/dynamic_library.cpp
	M			src/utils/plugins/dynamic_library.hpp
	M			src/utils/plugins/module_base.cpp
	M			src/utils/plugins/module_base.hpp
	M			src/utils/plugins/plugin_api_version.h
	M			src/utils/plugins/plugin_base.cpp
	M			src/utils/plugins/plugin_base.hpp
	M			src/utils/plugins/plugin_interface.h
	M			src/utils/plugins/plugin_manager.cpp
	M			src/utils/plugins/plugin_manager.hpp
	M			src/utils/plugins/plugin_types.hpp
	M			src/utils/range_iterator.hpp
	M			src/utils/range_iterator.inl
	M			src/utils/scope_guard.hpp
	M			src/utils/sparse_solvers/sparse_bicgstab.hpp
	M			src/utils/sparse_solvers/sparse_gmres.hpp
	M			src/utils/sparse_solvers/sparse_lu.hpp
	M			src/utils/sparse_solvers/sparse_qr.hpp
	M			src/utils/sparse_solvers/sparse_solver.hpp
	M			src/utils/sparse_solvers/sparse_solver_base.hpp
	M			src/utils/sparse_solvers/sparse_solver_structs.hpp
	M			src/utils/timer.cpp
	M			src/utils/timer.hpp
	M			src/utils/tmp.cpp
	M			src/utils/value_checker.hpp
	M			src/utils/vector_checker.hpp