diff --git a/CMakeLists.txt b/CMakeLists.txt index b6523e7..ba2586d 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,212 +1,222 @@ #################################################### # # # SpecMiCP : CMakeLists.txt # # # #################################################### project(specmicp) cmake_minimum_required(VERSION 2.8.8) # Configuration options # ====================== # For an explanation of the options see the INSTALL file option( SPECMICP_USE_OPENMP "Thread parallelisation of specmicp instances if available" ON ) option( SPECMICP_NO_DEBUG "Disable SpecMiCP assert" OFF ) option( SPECMICP_BUILD_STATIC "Build static libraries" OFF ) option( SPECMICP_BUILD_EXAMPLE "Build the examples" ON ) option( SPECMICP_DEBUG_EQUATION_FD_JACOBIAN "Use a finite difference jacobian is specmicp" OFF ) option( SPECMICP_BINARIES_USE_STATIC "SpecMiCP binaries use static libraries" OFF) # PGO sequence option( SPECMICP_PROFILE_GENERATE "Generate the profile for PGO optimization" OFF ) option( SPECMICP_PROFILE_USE "Use the generated profile for PGO optimization" OFF ) # LTO optimization option( SPECMICP_LTO "Use link time optimization" OFF ) option( SPECMICP_LD_GOLD "Use GNU gold linker" ON ) option( SPECMICP_BENCHMARK "Build benchmark" OFF ) # global variables # ================ set(SPECMICP_VERSION 0.0.3) # External Package # ================ set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${PROJECT_SOURCE_DIR}/cmake) # OpenMP #------- # not required but recommended if(SPECMICP_USE_OPENMP) find_package(OpenMP) endif() # Boost # ----- find_package(Boost REQUIRED) include_directories(${Boost_INCLUDE_DIR}) # Eigen # ----- find_package(Eigen3 REQUIRED) # This module comes from the Eigen3 Package include_directories(${EIGEN3_INCLUDE_DIR}) # Eigen unsuported # GMRES.h is really the file we are using/looking for # If it doesn't exist then the solver will not be included in the list of the parse solvers if(EXISTS "${EIGEN3_INCLUDE_DIR}/unsupported/Eigen/src/IterativeSolvers/GMRES.h") add_definitions(-DEIGEN_UNSUPPORTED_FOUND) include_directories("${EIGEN3_INCLUDE_DIR}/unsupported/") endif() # Yaml-cpp # -------- include(FindPkgConfig) pkg_check_modules(YAML REQUIRED yaml-cpp>=0.5) include_directories(${YAML_INCLUDE_DIRS}) link_directories(${YAML_LIBRARY_DIRS}) # sanitizer include(SanitizerBuild) # compilation flags # ================= # check the availability of : # c++11 include(cxx11) # -fuse-ld=gold include(gold_linker) # pgo optimization include(pg_optimization) # -fvisibility-hidden include(visibility_flag) # just a friendly warning if(NOT UNIX) message(WARNING "not tested !") endif() include(lto) # set the flag SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${CXX11_FLAG}") if (OPENMP_FOUND) SET( CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${OpenMP_C_FLAGS}") SET( CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}") endif() SET(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -Wall -pedantic") ##SET(CMAKE_CXX_FLAGS_RELEASE "-O2 -DNDEBUG") message(STATUS "c++ flags : ${CMAKE_CXX_FLAGS}") # Directories ######################################################################### # 3rd party # ========= # installation dir # ---------------- # http://www.cmake.org/pipermail/cmake/2010-February/035466.html # compute default library install dir # library # ------ set (_DEFAULT_LIBRARY_INSTALL_DIR lib) if (EXISTS "${CMAKE_INSTALL_PREFIX}/lib32/" AND CMAKE_SIZEOF_VOID_P EQUAL 4) set (_DEFAULT_LIBRARY_INSTALL_DIR lib32) elif (EXISTS "${CMAKE_INSTALL_PREFIX}/lib64/" AND CMAKE_SIZEOF_VOID_P EQUAL 8) set (_DEFAULT_LIBRARY_INSTALL_DIR lib64) endif () # the library install dir set(LIBRARY_INSTALL_DIR "${_DEFAULT_LIBRARY_INSTALL_DIR}" CACHE PATH "Installation directory for libraries") set(STATIC_LIBRARY_INSTALL_DIR "${_DEFAULT_LIBRARY_INSTALL_DIR}/static" CACHE PATH "Installation directory for static libraries") # make the library install dir an absolute path (can be important e.g. when using CONFIGURE_FILE to embed # the library installation directory into a file) if(NOT IS_ABSOLUTE "${LIBRARY_INSTALL_DIR}") set(LIBRARY_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/${LIBRARY_INSTALL_DIR}") endif() if(NOT IS_ABSOLUTE "${STATIC_LIBRARY_INSTALL_DIR}") set(STATIC_LIBRARY_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/${STATIC_LIBRARY_INSTALL_DIR}") endif() # Binaries # -------- set(BIN_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/bin" CACHE PATH "Installation directory for the programs") # include #-------- set(INCLUDE_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/include/specmicp" CACHE PATH "Installation directory for the headers") # share #------ set(SHARE_INSTALL_DIR "${CMAKE_INSTALL_PREFIX}/share/specmicp" CACHE PATH "Installation directory for the miscalleneous files...") enable_testing(true) # CPP API : SpecMiCP / ReactMiCP ######################################################################### # the main source directory - the c++ api set(SPECMICP_CPP_API ${CMAKE_CURRENT_SOURCE_DIR}/src) include_directories(${SPECMICP_CPP_API}) add_subdirectory( ${SPECMICP_CPP_API} ) set(SPECMICP_LIBS specmicp specmicp_database specmicp_common ${YAML_LIBRARIES}) set(REACTMICP_LIBS reactmicp dfpm ${SPECMICP_LIBS} ) set(SPECMICP_STATIC_LIBS specmicp_static specmicp_database_static specmicp_common_static ${YAML_LIBRARIES}) set(REACTMICP_STATIC_LIBS reactmicp_static dfpm_static ${SPECMICP_STATIC_LIBS}) # Binaries ######################################################################### add_subdirectory(src/bin/specmicp) # Database ######################################################################### add_subdirectory( data ) # Documentation ######################################################################### # "common" documentation # ----------------------- set( DOCS_LIST ${CMAKE_CURRENT_SOURCE_DIR}/README.md ${CMAKE_CURRENT_SOURCE_DIR}/INSTALL ${CMAKE_CURRENT_SOURCE_DIR}/COPYING ) add_custom_target(docs SOURCES ${DOCS_LIST}) install(FILES ${DOCS_LIST} DESTINATION ${SHARE_INSTALL_DIR} ) # scripts # -------- add_subdirectory( scripts ) # Doxygen documentation # --------------------- add_subdirectory( doc ) # Tests ######################################################################### add_subdirectory( tests ) # Examples ######################################################################### add_subdirectory( examples ) # Benchmark ######################################################################## if (SPECMICP_BENCHMARK) add_subdirectory( benchmark ) endif() + +# Docker +######################################################################## + +file(COPY + docker/Dockerfile + docker/run_tests.sh + DESTINATION ${CMAKE_CURRENT_BINARY_DIR}/docker + ) + diff --git a/docker/Dockerfile b/docker/Dockerfile new file mode 100644 index 0000000..584be68 --- /dev/null +++ b/docker/Dockerfile @@ -0,0 +1,21 @@ +# specmicp test image +FROM debian:8.2 +MAINTAINER Fabien Georget +RUN apt-get update && apt-get install -y \ + gcc-4.9 \ + g++ \ + g++-4.9 \ + git \ + cmake \ + libboost-dev \ + libeigen3-dev \ + libyaml-cpp0.5 \ + libyaml-cpp-dev + +RUN useradd -ms /bin/bash specmicp + +COPY run_tests.sh /home/specmicp/run_tests.sh +RUN chown specmicp /home/specmicp/run_tests.sh && chmod +x /home/specmicp/run_tests.sh + +USER specmicp +WORKDIR /home/specmicp diff --git a/docker/run_tests.sh b/docker/run_tests.sh new file mode 100644 index 0000000..8ab6283 --- /dev/null +++ b/docker/run_tests.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +git clone https://bitbucket.org/specmicp/specmicp +cd specmicp +cmake . +make -j4 +ctest -j4