diff --git a/CHANGELOG.md b/CHANGELOG.md
index f9d2f30..725a51b 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,186 +1,187 @@
# Changelog
All notable changes to this project will be documented in this file.
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
## Unreleased
### Added
- Added `read()` method to dumpers to create a model from a dump file
- `getClusters()` can be called in MPI contact with partial contact maps
- Added a JSON encoder class for models and a JSON dumper
### Fixed
- Fixed a host of dump read/write issues when model type was not `volume_*d`.
Dumper tests are now streamlined and systematic.
+- Fixed a bug where `Model::solveDirichlet` would not compute correctly
## v2.2.2 -- 2021-04-02
### Added
- Entry-point `tamaas` defines a grouped CLI for `examples/pipe_tools`. Try
executing `tamaas surface -h` from the command-line!
### Changed
- `CXXFLAGS` are now passed to the linker
- Added this changelog
- Using absolute paths for environmental variables when running `scons test`
- Reorganized documentation layout
- Gave the build system a facelift (docs are now generated directly with SCons
instead of a Makefile)
### Deprecated
- Python 2 support is discontinued. Version `v2.2.1` is the last PyPi build with
a Python 2 wheel.
- The scripts in `examples/pipe_tools` have been replaced by the `tamaas` command
### Fixed
- `UVWDumper` no longer imports `mpi4py` in sequential
- Compiling with different Thrust/FFTW backends
## v2.2.1 -- 2021-03-02
### Added
- Output registered fields and dumpers in `print(model)`
- Added `operator[]` to the C++ model class (for fields)
- Added `traction` and `displacement` properties to Python model bindings
- Added `operators` property to Python model bindings, which provides a
dict-like access to registered operators
- Added `shape` and `spectrum` to properties to Python surface generator
bindings
- Surface generator constructor accepts surface global shape as argument
- Choice of FFTW thread model
### Changed
- Tests use `/tmp` for temporary files
- Updated dependency versions (Thrust, Pybind11)
### Deprecated
- Most `get___()` and `set___()` in Python bindings have been deprecated. They
will generate a `DeprecationWarning`.
### Removed
- All legacy code
## v2.2.0 -- 2020-12-31
### Added
- More accurate function for computation of contact area
- Function to compute deviatoric of tensor fields
- MPI implementation
- Convenience `hdf5toVTK` function
- Readonly properties `shape`, `global_shape`, `boundary_shape` on model to give
shape information
### Changed
- Preprocessor defined macros are prefixed with `TAMAAS_`
- Moved `tamaas.to_voigt` to `tamaas.compute.to_voigt`
### Fixed
- Warning about deprecated constructors with recent GCC versions
- Wrong computation of grid strides
- Wrong computation of grid sizes in views
## v2.1.4 -- 2020-08-07
### Added
- Possibility to generate a static `libTamaas`
- C++ implementation of DFSANE solver
- Allowing compilation without OpenMP
### Changed
- NetCDF dumper writes frames to a single file
### Fixed
- Compatibility with SCons+Python 3
## v2.1.3 -- 2020-07-27
### Added
- Version number to `TamaasInfo`
### Changed
- Prepending root directory when generating archive
## v2.1.2 -- 2020-07-24
This release changes some core internals related to discrete Fourier transforms
for future MPI support.
### Added
- Caching `CXXFLAGS` in SCons build
- SCons shortcut to create code archive
- Test of the elastic-plastic contact solver
- Paraview data dumper (`.pvd` files)
- Compression for UVW dumper
- `__contains__` and `__iter__` Python bindings of model
- Warning message of possible overflow in Kelvin
### Changed
- Simplified `tamaas_info.cpp`, particularly the diff part
- Using a new class `FFTEngine` to manage discrete Fourier transforms. Plans are
re-used as much as possible with different data with the same shape. This is
in view of future MPI developments
- Redirecting I/O streams in solve functions so they can be used from Python
(e.g. in Jupyter notebooks)
- Calling `initialize()` and `finalize()` is no longer necessary
### Fixed
- Convergence issue with non-linear solvers
- Memory error in volume potentials
## v2.1.1 -- 2020-04-22
### Added
- SCons shortcut to run tests
### Fixed
- Correct `RPATH` for shared libraries
- Issues with SCons commands introduced in v2.1.0
- Tests with Python 2.7
## v2.1.0 -- 2020-04-17
### Added
- SCons shortcuts to build/install Tamaas and its components
- Selection of integration method for Kelvin operator
- Compilation option to remove the legacy part of Tamaas
- NetCDF dumper
### Fixed
- Link bug with clang
- NaNs in Kato saturated solver
## v2.0.0 -- 2019-11-11
First public release. Contains relatively mature elastic-plastic contact code.
diff --git a/src/model/model.cpp b/src/model/model.cpp
index 16f2970..b358cf2 100644
--- a/src/model/model.cpp
+++ b/src/model/model.cpp
@@ -1,184 +1,184 @@
/**
* @file
* LICENSE
*
* Copyright (©) 2016-2021 EPFL (École Polytechnique Fédérale de Lausanne),
* Laboratory (LSMS - Laboratoire de Simulation en Mécanique des Solides)
*
* This program is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public License
* along with this program. If not, see .
*
*/
/* -------------------------------------------------------------------------- */
#include "model.hh"
#include "be_engine.hh"
#include "logger.hh"
/* -------------------------------------------------------------------------- */
namespace tamaas {
/* -------------------------------------------------------------------------- */
void Model::setElasticity(Real E_, Real nu_) {
setYoungModulus(E_);
setPoissonRatio(nu_);
updateOperators();
}
/* -------------------------------------------------------------------------- */
void Model::applyElasticity(GridBase& stress,
const GridBase& strain) const {
operators.at("hooke")->apply(const_cast&>(strain), stress);
}
/* -------------------------------------------------------------------------- */
GridBase& Model::getTraction() { return getField("traction"); }
const GridBase& Model::getTraction() const { return (*this)["traction"]; }
/* -------------------------------------------------------------------------- */
GridBase& Model::getDisplacement() { return getField("displacement"); }
const GridBase& Model::getDisplacement() const {
return (*this)["displacement"];
}
/* -------------------------------------------------------------------------- */
const std::vector& Model::getSystemSize() const { return system_size; }
/* -------------------------------------------------------------------------- */
const std::vector& Model::getDiscretization() const {
return discretization;
}
/* -------------------------------------------------------------------------- */
void Model::solveNeumann() {
engine->registerNeumann();
engine->solveNeumann(getTraction(), getDisplacement());
}
void Model::solveDirichlet() {
engine->registerDirichlet();
- engine->solveDirichlet(getTraction(), getDisplacement());
+ engine->solveDirichlet(getDisplacement(), getTraction());
}
/* -------------------------------------------------------------------------- */
IntegralOperator* Model::getIntegralOperator(const std::string& name) const {
return operators.at(name).get();
}
/* -------------------------------------------------------------------------- */
std::vector Model::getIntegralOperators() const {
std::vector keys;
keys.reserve(operators.size());
std::transform(operators.begin(), operators.end(), std::back_inserter(keys),
[](auto&& pair) { return pair.first; });
return keys;
}
/* -------------------------------------------------------------------------- */
void Model::updateOperators() {
for (auto& op : operators)
op.second->updateFromModel();
}
/* -------------------------------------------------------------------------- */
void Model::addDumper(std::shared_ptr dumper) {
this->dumpers.push_back(std::move(dumper));
}
void Model::dump() const {
for (auto& dumper : dumpers)
if (dumper)
dumper->dump(*this);
}
/* -------------------------------------------------------------------------- */
void Model::registerField(const std::string& name,
std::shared_ptr> field) {
fields[name] = std::move(field);
}
const GridBase& Model::getField(const std::string& name) const try {
return *fields.at(name);
} catch (std::out_of_range& e) {
Logger().get(LogLevel::warning)
<< "Field " << name << " not registered in model\n";
throw e;
}
GridBase& Model::getField(const std::string& name) try {
return *fields.at(name);
} catch (std::out_of_range& e) {
Logger().get(LogLevel::warning)
<< "Field " << name << " not registered in model\n";
throw e;
}
std::vector Model::getFields() const {
std::vector keys;
keys.reserve(fields.size());
std::transform(fields.begin(), fields.end(), std::back_inserter(keys),
[](auto&& pair) { return pair.first; });
return keys;
}
const GridBase& Model::operator[](const std::string& name) const {
return getField(name);
}
GridBase& Model::operator[](const std::string& name) {
return getField(name);
}
/* -------------------------------------------------------------------------- */
std::ostream& operator<<(std::ostream& o, const Model& _this) {
o << "Model<" << _this.getType() << "> (E = " << _this.getYoungModulus()
<< ", nu = " << _this.getPoissonRatio() << ")\n";
auto out_collec = [&o](auto&& collec) {
std::for_each(collec.begin(), collec.end() - 1,
[&o](const auto& x) { o << x << ", "; });
o << collec.back();
};
// Printing domain size
o << " - domain = [";
out_collec(_this.getSystemSize());
o << "]\n";
// Printing discretization
o << " - discretization = [";
out_collec(_this.getDiscretization());
o << "]\n";
if (mpi::size() > 1) {
o << " - global discretization = [";
out_collec(_this.getGlobalDiscretization());
o << "]\n";
}
// Print fields
o << " - registered fields = [";
out_collec(_this.getFields());
o << "]\n";
o << " - registered operators = [";
out_collec(_this.getIntegralOperators());
o << "]";
if (_this.dumpers.size())
o << "\n - " << _this.dumpers.size() << " registered dumpers";
return o;
}
/* -------------------------------------------------------------------------- */
} // namespace tamaas