ATLASxAnalyses/MetaCycPWanalysis3f2a9aea0cf2master
MetaCycPWanalysis
README.md
ATLASx Analysis tools
The data and scripts contained in this repository allow the user to reproduce the Figure 3: "Pathway search comparison to dataset of pathways extracted from MetaCyc" of the ATLASx manuscript from the original data files and the Supplementary Figure S3: "Distribution of the length (i.e., number of reaction steps) of reconstructed MetaCyc pathways."
Usage
MetaCyc pathway coverage plot
$ cd NetworkAnalysis/Source
Plot number of pathways covered within top-100, beyond top-100 and covered with alternative routes
`$ python3 plot.py
Running this script will produce 3 plot files within the "plots" folder. onlyBNICEvsAllATLASx.png - figure 3 of the manuscript plotGoldenDatasetPathwayLengthDistributionAll_all.png - main part of the Supplementary Figure 3 plotGoldenDatasetPathwayLengthDistributionAll_crop.png - cropped in part of the Supplementary Figure 3