This repository contains all the necessary scripts to perform the extraction of inter-subject functional correlation (ISFC) transients from functional MRI data.
Diffusion ISFC_Pipeline (master)
Recent Commits
Recent Commits
Commit | Author | Details | Committed | ||||
---|---|---|---|---|---|---|---|
bd3335decb34 | Thomas Bolton | no message | Jul 22 2021 | ||||
abfa1e4142d1 | Thomas Bolton | no message | Jan 30 2021 | ||||
01591d3e534e | Thomas Bolton | Made some minor adjustments for consistency purposes | Jan 30 2021 | ||||
ff0c0e8b4bb2 | Thomas Bolton | Removed useless files | Jan 29 2021 | ||||
1a4acb27e337 | Thomas Bolton | no message | Jun 12 2020 | ||||
cd6a95e80cd5 | Thomas Bolton | Modified GUIs and files to suit the revisions from the JoVE submission... | Nov 7 2018 | ||||
de68bc85b1c2 | Thomas Bolton | Readding files for GUI1 | Sep 26 2018 | ||||
339549bd45cd | Thomas Bolton | Readding GUI2 and GUI3 data files | Sep 26 2018 | ||||
0ef747682b3f | Thomas Bolton | Readding other miscellaneous files | Sep 26 2018 | ||||
742bf01a3b75 | Thomas Bolton | - Reading the GUIs and functions | Sep 26 2018 | ||||
6c846143a6f5 | Thomas Bolton | aaka | Sep 26 2018 | ||||
1e8388117cef | Thomas Bolton | Merge branch 'master' of https://c4science.ch/source/Intersubj_pipeline | Sep 26 2018 | ||||
5c4f9006838e | Thomas Bolton | Revert "Added draft test" | Sep 26 2018 | ||||
1fe5fb1cead4 | Thomas Bolton | no message | Sep 26 2018 | ||||
43995c3ce32f | Thomas Bolton | no message | Sep 26 2018 |
Readme.rtf
Readme.rtf
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\f0\fs24 \cf0 In this repository, you will find all the scripts necessary to leverage the inter-subject functional correlation approach described in Bolton et al. 2019 (JoVE). All graphical user interfaces were last tested on January 21st 2021, and were fully functional on the provided example data.\
\
JOVE_GUI1 enables to perform initial preprocessing steps on the functional data at hand (detrending, regression of nuisance variables), and to display the time courses following these steps.\
\
JOVE_GUI2 enables to perform atlasing into regional time courses, scrubbing and filtering at an appropriate cutoff for the analysis (as a function of the desired window length).\
\
JOVE_GUI3 enables to computes, in sliding window fashion, inter-subject functional correlation (ISFC) estimates. A bootstrapping process is conducted to improve robustness of the outcomes.\
\
JOVE_GUI4 thresholds the ISFC time courses from a naturalistic paradigm of interest, using either resting-state or phase-randomised time courses as null data.\
\
If there is anything unclear left, do not hesitate to contact us at thomas.bolton@epfl.ch for assistance.}
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{\*\expandedcolortbl;;}
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\pard\tx566\tx1133\tx1700\tx2267\tx2834\tx3401\tx3968\tx4535\tx5102\tx5669\tx6236\tx6803\pardirnatural\partightenfactor0
\f0\fs24 \cf0 In this repository, you will find all the scripts necessary to leverage the inter-subject functional correlation approach described in Bolton et al. 2019 (JoVE). All graphical user interfaces were last tested on January 21st 2021, and were fully functional on the provided example data.\
\
JOVE_GUI1 enables to perform initial preprocessing steps on the functional data at hand (detrending, regression of nuisance variables), and to display the time courses following these steps.\
\
JOVE_GUI2 enables to perform atlasing into regional time courses, scrubbing and filtering at an appropriate cutoff for the analysis (as a function of the desired window length).\
\
JOVE_GUI3 enables to computes, in sliding window fashion, inter-subject functional correlation (ISFC) estimates. A bootstrapping process is conducted to improve robustness of the outcomes.\
\
JOVE_GUI4 thresholds the ISFC time courses from a naturalistic paradigm of interest, using either resting-state or phase-randomised time courses as null data.\
\
If there is anything unclear left, do not hesitate to contact us at thomas.bolton@epfl.ch for assistance.}
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