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Intersubj_pipeline/Utilities/Plotting/PlotBrainGraph_Kmeans_withtitle.m
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PlotBrainGraph_Kmeans_withtitle.m
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function [] = PlotBrainGraph_Kmeans_withtitle(h,CM,CC,CodeBook,T_conn,Factor_SphereSize,Factor_Col,Exp_Sphere,View,Colormap_nodes,Colormap_edges,Gamma,LinearWeight,CA,PT,title)
% edges
pp.doPlotConnections=1;
pp.pruneTinyConnections=1;
pp.pruningWeight=T_conn;
pp.linearWeight=LinearWeight;
pp.gamma=Gamma;
pp.doColourCode=true;
pp.cmapchoiceE=Colormap_edges;
% nodes
pp.doPlotDegreeSpheres=true;%**
pp.myDSplotT=0; % this * 1/N is the threshold
pp.showLabels=0;
pp.cmapchoiceV=Colormap_nodes; % gray
% Controls the exponent for the display of the spheres
pp.e_matD_to_sphS=Exp_Sphere;
pp.f_matD_to_sphS=1;
% brain outline
pp.bmesh_faceAlpha=0.2; % transparency
% node size and color
pp.FctForColSph=CC/Factor_Col;
pp.FctForSizSph=CC/Factor_SphereSize;
% Edge transparency
pp.doAlpha = true;
pp.alphagamma = 0.05;
axes(h);
hold(h,'on');
if ~isempty(CA)
show_cm(CM,CodeBook.full,3,'gamma',pp.gamma,'FctForColSph',pp.FctForColSph,...
'linearWeight',pp.linearWeight,'showLabels',pp.showLabels,...
'createFigure',false,'doColourCode',pp.doColourCode,'doAlpha',pp.doAlpha,'alphagamma',pp.alphagamma,...
'cmapchoiceV',pp.cmapchoiceV,'cmapchoiceE',pp.cmapchoiceE,...
'doPlotConnections',pp.doPlotConnections,'doPlotDegreeSpheres',pp.doPlotDegreeSpheres,...
'bmesh_show',1,'bmesh_hemi','lr','bmesh_useConvexHull',false,...
'bmesh_convexHullOutlinePlanes','','FctForSizSph',pp.FctForSizSph,...
'bmesh_faceAlpha',pp.bmesh_faceAlpha,'pruneTinyConnections',pp.pruneTinyConnections,...
'pruningWeight',pp.pruningWeight,'e_matD_to_sphS',pp.e_matD_to_sphS,'f_matD_to_sphS', pp.f_matD_to_sphS,...
'plotDegreeSpheresOnlyAboveThreshold',pp.myDSplotT,...
'showTopNlabels',0,'txtPosOffset',5*[1 1 1],'ColAxis',CA,...
'showTopNlabelsBy','vertexW','useShortNames',0);
else
show_cm(CM,CodeBook.full,3,'gamma',pp.gamma,'FctForColSph',pp.FctForColSph,...
'linearWeight',pp.linearWeight,'showLabels',pp.showLabels,...
'createFigure',false,'doColourCode',pp.doColourCode,'doAlpha',pp.doAlpha,'alphagamma',pp.alphagamma,...
'cmapchoiceV',pp.cmapchoiceV,'cmapchoiceE',pp.cmapchoiceE,...
'doPlotConnections',pp.doPlotConnections,'doPlotDegreeSpheres',pp.doPlotDegreeSpheres,...
'bmesh_show',1,'bmesh_hemi','lr','bmesh_useConvexHull',false,...
'bmesh_convexHullOutlinePlanes','','FctForSizSph',pp.FctForSizSph,...
'bmesh_faceAlpha',pp.bmesh_faceAlpha,'pruneTinyConnections',pp.pruneTinyConnections,...
'pruningWeight',pp.pruningWeight,'e_matD_to_sphS',pp.e_matD_to_sphS,'f_matD_to_sphS', pp.f_matD_to_sphS,...
'plotDegreeSpheresOnlyAboveThreshold',pp.myDSplotT,...
'showTopNlabels',0,'txtPosOffset',5*[1 1 1],...
'showTopNlabelsBy','vertexW','useShortNames',0);
end
hold(h,'off');
%colorbar;
axis off
axis tight;
if View==1, az=0; el=90; cam='right'; vview='ax';
elseif View==2, az=90; el=0; cam='right'; vview='sag';
else az=0; el=0; cam='left'; vview='cor';
end
view(az,el);
camlight(cam);
%disp('done');
% print('-depsc',[PT,'_',title]);
% savefig([PT,'_',title]);
end
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