Nanopore-tools/EventGenerator.py
338200479f6dsmalladditions

EventGenerator.py
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			##SHOULD NOT BE USED FOR MINI-MEETINGS!!! PAPERS ONLY

			import numpy as np
			from matplotlib.ticker import FuncFormatter
			from scipy import constants as cst
			import Functions as uf
			import os
			import matplotlib.pyplot as plt
			from matplotlib.ticker import EngFormatter
			import matplotlib
			matplotlib.rcParams['pdf.fonttype'] = 42
			matplotlib.rcParams['ps.fonttype'] = 42

			currForm = EngFormatter(unit='A', places=1)
			VoltForm = EngFormatter(unit='V', places=1)

			sr = 10e3
			baselinetime = 50e-3
			baselineCurrent = 5e-9
			dropPercent = 0.0
			dt = 25e-3
			std = 100e-12

			signal = np.array([])
			signal = np.append(signal, baselineCurrentnp.ones(int(baselinetimesr)))
			signal = np.append(signal, (baselineCurrent-dropPercentbaselineCurrent)np.ones(int(dt*sr)))
			signal = np.append(signal, baselineCurrentnp.ones(int(baselinetimesr)))
			noise = np.random.normal(0, std, len(signal))
			signal = signal + noise
			t = np.arange(len(signal))/sr

			fig2 = plt.figure(2, figsize=(8, 4))
			ax2 = fig2.add_subplot(1, 1, 1)
			ax2.plot(t, signal)
			ax2.yaxis.set_major_formatter(EngFormatter(unit='A'))
			ax2.xaxis.set_major_formatter(EngFormatter(unit='s'))
			ax2.set_ylabel('Ionic Current')
			ax2.set_xlabel('Time')
			fig2.savefig('FakeEvent_.pdf', transparent=True)
			plt.close()