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KDE_RidgePlot.py
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Created
Wed, Nov 13, 06:16
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1 KB
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text/x-python
Expires
Fri, Nov 15, 06:16 (2 d)
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blob
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Handle
22255306
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rNPTOOLS Nanopore Tools
KDE_RidgePlot.py
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import
numpy
as
np
import
pandas
as
pd
import
seaborn
as
sns
import
matplotlib.pyplot
as
plt
sns
.
set
(
style
=
"white"
,
rc
=
{
"axes.facecolor"
:
(
0
,
0
,
0
,
0
)})
# Create the data
rs
=
np
.
random
.
RandomState
(
1979
)
x
=
rs
.
randn
(
500
)
g
=
np
.
tile
(
list
(
"ABCDEFGHIJ"
),
50
)
df
=
pd
.
DataFrame
(
dict
(
x
=
x
,
g
=
g
))
m
=
df
.
g
.
map
(
ord
)
df
[
"x"
]
+=
m
# Initialize the FacetGrid object
pal
=
sns
.
cubehelix_palette
(
10
,
rot
=-.
25
,
light
=.
7
)
g
=
sns
.
FacetGrid
(
df
,
row
=
"g"
,
hue
=
"g"
,
aspect
=
15
,
height
=.
5
,
palette
=
pal
)
# Draw the densities in a few steps
g
.
map
(
sns
.
kdeplot
,
"x"
,
clip_on
=
False
,
shade
=
True
,
alpha
=
1
,
lw
=
1.5
,
bw
=.
2
)
g
.
map
(
sns
.
kdeplot
,
"x"
,
clip_on
=
False
,
color
=
"w"
,
lw
=
2
,
bw
=.
2
)
g
.
map
(
plt
.
axhline
,
y
=
0
,
lw
=
2
,
clip_on
=
False
)
# Define and use a simple function to label the plot in axes coordinates
def
label
(
x
,
color
,
label
):
ax
=
plt
.
gca
()
ax
.
text
(
0
,
.
2
,
label
,
fontweight
=
"bold"
,
color
=
color
,
ha
=
"left"
,
va
=
"center"
,
transform
=
ax
.
transAxes
)
g
.
map
(
label
,
"x"
)
# Set the subplots to overlap
g
.
fig
.
subplots_adjust
(
hspace
=-.
25
)
# Remove axes details that don't play well with overlap
g
.
set_titles
(
""
)
g
.
set
(
yticks
=
[])
g
.
despine
(
bottom
=
True
,
left
=
True
)
g
.
fig
.
savefig
()
plt
.
show
()
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