PlotAllChimeraFiles.py
62be1090664bsmalladditions

PlotAllChimeraFiles.py
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			import UsefulFunctions as uf
			import pyqtgraph as pg
			import matplotlib.pyplot as plt
			from timeit import default_timer as timer
			import scipy
			import numpy as np
			import os
			import matplotlib
			from matplotlib.backends.backend_pdf import PdfPages
			from matplotlib.font_manager import FontProperties
			from tkinter import Tk
			from tkinter.filedialog import askopenfilenames

			fontP = FontProperties()
			fontP.set_size('small')
			props = dict(boxstyle='round', facecolor='wheat', alpha=0.5)

			Tk().withdraw()
			os.system('''/usr/bin/osascript -e 'tell app "Finder" to set frontmost of process "python" to true' ''')

			#filenames = ['/Volumes/backup/2017/Michael/Axopatch/20170512/10mMKClInFlowCellORingPore1mm.dat']
			#filenames = ['/Volumes/backup/2017/Michael/Axopatch/20170824/30B_10mMKClCis100mMTrans_PosElecToCis_IV.dat']
			expname = 'All'

			filenames = askopenfilenames(filetypes = (("chimera files", ".log"), ("all files", ".*")))

			for filename in filenames:
			print(filename)
			out=uf.ImportChimeraRaw(filename, 200*1e3)
			coefficients = {'a': 0.999, 'E': 0, 'S': 5, 'eventlengthLimit': 10e-3 * out['samplerate']}
			fig1, ax = plt.subplots(1)
			ax.plot(np.arange(0, len(out['i1']))/out['sampleratelp'], out['i1'] * 1e9, 'r')
			ax.set_xlabel('Time [s]')
			ax.set_ylabel('Current [nA]')
			fig1.savefig(filename[:-4] + '.png', dpi=150)
			fig1.clear()
			plt.close()