Diffusion Nanopore Tools (master) History

Nanopore-tools/Functions.py
masterc92f4f7241ef9be0737db63…

Jun 7 2019

Modified detection of events, added option to fit traces with function and use…
ebb436057178
·deen on Jun 7 2019, 17:59.

May 9 2019

Modified plotting of PSD
a0bf6cc71c88
·deen on May 9 2019, 10:58.

Apr 3 2019

Removed some prints
551a42365c11
·deen on Apr 3 2019, 16:01.

Feb 28 2019

Added Drndic pore estimation.
c365cbf76e0b
·Microtubulus <michael.graf> on Feb 28 2019, 16:40.

Feb 19 2019

Added WaveletDenoising function based on DOI: 10.1021/acs.nanolett.8b0438
23bbd39cbe27
·schneuwly on Feb 19 2019, 11:14.

Jan 27 2019

more docstrings
321317e9b140
·schneuwly on Jan 27 2019, 22:36.

Jan 24 2019

added docstrings to document some functions
978ab3ff6e83
·schneuwly on Jan 24 2019, 00:20.

Jan 14 2019

Added PSF plotting function
ac035c18794d
·deen on Jan 14 2019, 17:17.

Dec 12 2018

Fixed deprecated function in pandas.
c710ce839009
·Axopatch on Dec 12 2018, 13:54.

Dec 11 2018

Added function GetParameters() to see default parameters Changed…
c6b661d2d480
·Axopatch on Dec 11 2018, 10:08.

Dec 5 2018

Added Plotting function for simple trace plot
ce6047fe7825
·deen on Dec 5 2018, 13:14.
Optimized imports, restructured code a bit
f6493234bb87
·deen on Dec 5 2018, 10:59.
Moved Loading data functions to new script, for easier access. Moved unused…
f6dac0696a44
·deen on Dec 5 2018, 10:47.
Added check for length to not show error message if missing data
d20e559ae01d
·deen on Dec 5 2018, 10:14.

Nov 28 2018

merge
2ef35a200eac
·thakur on Nov 28 2018, 11:22.

Nov 23 2018

Changed opening of abf files, current units appear to be in pA.
06756ab5ac7e
·deen on Nov 23 2018, 09:21.

Nov 20 2018

dated 20/11/2018
cf08f7c66c2b
·thakur on Nov 20 2018, 22:07.

Nov 6 2018

Added verbose options to most load functions and event detection and IV making.
72d130d353ae
·deen on Nov 6 2018, 15:37.

Oct 23 2018

Bugfix in CUSUM fitting, index -1. Added time for CUSUM fitting. Fix for…
1b48a3ac0be4
·deen on Oct 23 2018, 16:13.
Changed fit types. Added Standard error key (SE) that correctly captures the…
d4e385f6328a
·deen on Oct 23 2018, 14:37.

Sep 25 2018

Removed plotting from nanoporeclases. Added CUSUM variables to nanoporeclasses.
1f6786480d9e
·deen on Sep 25 2018, 16:40.

Sep 21 2018

Changed saving of data
bde0ca0d1dab
·deen on Sep 21 2018, 16:09.
Fixed CUSUM function
38d9c4366802
·deen on Sep 21 2018, 12:53.

Sep 12 2018

Merge remote-tracking branch 'origin/master'
29927513e285
·deen on Sep 12 2018, 15:16.
Implemented CUSUM
d88f1af316db
·deen on Sep 12 2018, 11:20.

Sep 10 2018

Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools
bbda3fc18b16
·Microtubulus <michael.graf> on Sep 10 2018, 16:39.
Redox
06472a371340
·Microtubulus <michael.graf> on Sep 10 2018, 16:34.

Sep 7 2018

variable changes
d9ad6bb5c745
·deen on Sep 7 2018, 13:31.
Forgot to remove append
142711bf3427
·Jochem on Sep 7 2018, 13:30.
bug needs to be string
53eba428216e
·Jochem on Sep 7 2018, 13:28.
Added option to force run and option to cut out the saved chunks before…
531c52b5c6e1
·Jochem on Sep 7 2018, 13:20.
Estimate the impulse response length of the filter to improve calculation speed
8c5513d52bcc
·Jochem on Sep 7 2018, 11:28.

Sep 5 2018

Added equation for calculating size of nanocapillary and shrunken…
4dc9fe63cc83
·Jochem on Sep 5 2018, 17:25.

Aug 29 2018

Bugfix on Linux
b189ef23db0c
·Jochem on Aug 29 2018, 16:42.

Aug 27 2018

Implement changes to use Chimera non-raw IV data. Converted to SI units.
05af8394a4c4
·Jochem / Chimera_2nd on Aug 27 2018, 13:34.

Aug 17 2018

Added TraceAnalysis example script
8559e688e8a7
·Jochem on Aug 17 2018, 15:30.

Aug 10 2018

uncommented pyabf because I figured out how to install packages in Pycharm…
258189273e68
·Jochem / Axopatch on Aug 10 2018, 13:38.
test
f92e2943a971
·Axopatch on Aug 10 2018, 13:31.

Aug 7 2018

Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools
2f2bafc18cf4
·Microtubulus <michael.graf> on Aug 7 2018, 17:08.
Added Event Generator, for those that don't get events...
338200479f6d
·Microtubulus <michael.graf> on Aug 7 2018, 17:07.

Jul 31 2018

Merge branch 'master' of ssh://c4science.ch/diffusion/5484/nanopore-tools
52683b1c814c
·Jochem on Jul 31 2018, 14:27.
minor changes to Functions.py
031e4b218b40
·Jochem on Jul 31 2018, 14:27.

Jul 26 2018

Standard Error of the mean for exponential fit. Needs to be changed also for…
cdc7f3281cc4
·Microtubulus <michael.graf> on Jul 26 2018, 09:58.

Jul 20 2018

First ever commit of the most amazing collection of bug-free code...
820e9a946792
·Microtubulus <michael.graf> on Jul 20 2018, 16:14.