Diffusion Nanopore Tools (master) History

Nanopore-tools/Plotting
masterc92f4f7241ef9be0737db63…

Jun 17 2019

Implemented low-pass options for the whole trace display to speed things up
5db45a4bb67d
·Microtubulus <michael.graf> on Jun 17 2019, 14:34.
The plot that shows the event location within the whole trace is now scalable…
a59f7d7ae469
·Microtubulus <michael.graf> on Jun 17 2019, 13:35.

Jun 14 2019

fixed merge
9e38a6aefeb4
·Microtubulus <michael.graf> on Jun 14 2019, 16:28.
Merge remote-tracking branch 'origin/Development-of-Analysis-GUI' into…
f283e2d1368a
·deen on Jun 14 2019, 15:53.
Analysis UI created
abcdb00c948e
·deen on Jun 14 2019, 15:52.

Jun 12 2019

Moved sorting
62e380e32bf3
·deen on Jun 12 2019, 16:19.
Minor cosmetic changes
6b675b7de877
·deen on Jun 12 2019, 16:10.
Minor changes for plotting Bokeh in Jupyter
3b8380e96bc8
·deen on Jun 12 2019, 15:10.
sort Voltages
e377aa3ddf2c
·deen on Jun 12 2019, 14:58.
changed variable name
aeb2d8e44532
·deen on Jun 12 2019, 14:57.
Jochem's CUSUM eventPlots fix + UI files
b22aa27f135a
·Microtubulus <michael.graf> on Jun 12 2019, 13:23.
disabled nonfitted events by default
90792c965edb
·deen on Jun 12 2019, 11:11.

Jun 11 2019

Plotting with Currentdrop
3b21f3fa5b7a
·deen on Jun 11 2019, 11:26.
Added line in EventPlots for plotting in Jupyter Notebook
0a68ff931638
·deen on Jun 11 2019, 09:40.

Apr 26 2019

amazing edits and voltage based plotting by Jochem
f3ada36a22f3
·deen / thakur on Apr 26 2019, 17:28.

Apr 2 2019

Added lines for plotting on Mac OS X
58aa40228148
·thakur on Apr 2 2019, 17:37.

Mar 22 2019

import Range1D
47a96ece775c
·deen on Mar 22 2019, 16:54.
xlim and ylim on figure
bac909099f2c
·deen on Mar 22 2019, 16:48.
added limits to the function
60231057e4c9
·deen on Mar 22 2019, 15:35.

Mar 13 2019

bugfix
b312fafccb7f
·deen on Mar 13 2019, 17:54.
Open multiple files
930e44a351de
·Axopatch on Mar 13 2019, 17:22.

Feb 25 2019

Slight modification
819291dbdcac
·Axopatch on Feb 25 2019, 12:46.

Jan 28 2019

Merge remote-tracking branch 'origin/master'
32cc2a9272f4
·Axopatch on Jan 28 2019, 16:09.
for PSDs
d37dbe352a43
·Axopatch on Jan 28 2019, 16:08.

Jan 27 2019

more docstrings
321317e9b140
·schneuwly on Jan 27 2019, 22:36.

Jan 16 2019

Simplified version of GTau plot using Bokeh
475f5761a285
·deen on Jan 16 2019, 10:35.

Jan 14 2019

Added PSF plotting function
ac035c18794d
·deen on Jan 14 2019, 17:17.

Dec 12 2018

Fix plotting of data. Use Math.abs (capital letter for javascript!). Also shows…
4992f8975ef8
·deen on Dec 12 2018, 20:37.
absolute value of tick
2ba93daf2eed
·Axopatch on Dec 12 2018, 15:46.

Dec 11 2018

Added function GetParameters() to see default parameters Changed…
c6b661d2d480
·Axopatch on Dec 11 2018, 10:08.

Dec 6 2018

added back plotgui.py
3e9d528dfa0a
·deen on Dec 6 2018, 14:08.

Dec 5 2018

Removed cutting of FullTrace
4e1051e88fcb
·deen on Dec 5 2018, 18:47.
Implemented plotting in Bokeh
42aa378d194c
·deen on Dec 5 2018, 15:00.
Added Plotting function for simple trace plot
ce6047fe7825
·deen on Dec 5 2018, 13:14.
Moved Loading data functions to new script, for easier access. Moved unused…
f6dac0696a44
·deen on Dec 5 2018, 10:47.
Cleaning up of git
c174859d5b62
·deen on Dec 5 2018, 10:28.

Dec 4 2018

Merge remote-tracking branch 'origin/master'
acffb6d8ec58
·deen on Dec 4 2018, 16:26.
changed check to not 0
ecfb78678b73
·deen on Dec 4 2018, 16:25.

Nov 29 2018

Added log scale function
2bb51f0f8cee
·thakur / Axopatch on Nov 29 2018, 11:51.

Nov 6 2018

Added verbose options to most load functions and event detection and IV making.
72d130d353ae
·deen on Nov 6 2018, 15:37.

Sep 26 2018

Added voltage in plot
52897e16647e
·deen on Sep 26 2018, 14:43.
Added titlte
3661c2d7932e
·deen on Sep 26 2018, 14:02.
Minor bugfix for plotting if not fitted
62be1090664b
·deen on Sep 26 2018, 14:00.
Bugfix for opening data
d7388e3b03c0
·deen on Sep 26 2018, 13:09.
fixed plotting of events when clicked. Added option to show original trace with…
23cadb544365
·deen on Sep 26 2018, 11:35.
Changed name from Nanoporeplots to EventPlots. Added interactive plot, Split…
a8388ba67ded
·deen on Sep 26 2018, 09:42.

Sep 25 2018

Added interactive G-tau plot. Shows only CUSUM fitted events for now (with…
933b5123747b
·deen on Sep 25 2018, 17:19.

Aug 29 2018

Proper axis formatting.
4201830c1e25
·Jochem on Aug 29 2018, 16:41.
Linked PlotI_Tau axes. Fixed minor bug in background traces
9fe532e46cdb
·Jochem on Aug 29 2018, 13:45.

Aug 28 2018

Resolved conflicts
068e0fffdbda
·Jochem on Aug 28 2018, 07:56.
flipped current drop and minor changes in plotting
50b29ee1df0d
·Jochem on Aug 28 2018, 07:38.

Aug 21 2018

check
8c4db3437563
·thakur on Aug 21 2018, 00:48.
check
5ad52fea305a
·thakur on Aug 21 2018, 00:29.

Aug 20 2018

Did follwoing things:- 1. Added color and marker function to improve aesthetics…
8f67112dacf4
·thakur on Aug 20 2018, 23:33.

Aug 17 2018

Merge remote-tracking branch 'origin/master'
3d5d95261315
·thakur on Aug 17 2018, 15:55.
minor bugfix in case current is nan
61bf8183c0d0
·thakur on Aug 17 2018, 15:55.
added Plotting formatter
59fd72e1c808
·Jochem on Aug 17 2018, 15:45.

Aug 14 2018

Made Useless changes to IV plotting
b69207051934
·grafm / Axopatch on Aug 14 2018, 16:17.

Aug 7 2018

Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools
2f2bafc18cf4
·Microtubulus <michael.graf> on Aug 7 2018, 17:08.
Added Event Generator, for those that don't get events...
338200479f6d
·Microtubulus <michael.graf> on Aug 7 2018, 17:07.

Jul 31 2018

Merge branch 'master' of ssh://c4science.ch/diffusion/5484/nanopore-tools
52683b1c814c
·Jochem on Jul 31 2018, 14:27.
Basic EventDetection functions, Classes for event detection and plotting…
31eb273b9a5b
·Jochem on Jul 31 2018, 14:26.

Jul 26 2018

Merge branch 'master' of https://c4science.ch/diffusion/5484/nanopore-tools
e0388d3b9a7b
·Microtubulus <michael.graf> on Jul 26 2018, 10:00.

Jul 20 2018

Moved plotting files to new directory
6be965376176
·Jochem on Jul 20 2018, 17:07.

Nanopore-tools/Plottingmasterc92f4f7241ef9be0737db63…

Jun 17 2019

Jun 14 2019

Jun 12 2019

Jun 11 2019

Apr 26 2019

Apr 2 2019

Mar 22 2019

Mar 13 2019

Feb 25 2019

Jan 28 2019

Jan 27 2019

Jan 16 2019

Jan 14 2019

Dec 12 2018

Dec 11 2018

Dec 6 2018

Dec 5 2018

Dec 4 2018

Nov 29 2018

Nov 6 2018

Sep 26 2018

Sep 25 2018

Aug 29 2018

Aug 28 2018

Aug 21 2018

Aug 20 2018

Aug 17 2018

Aug 14 2018

Aug 7 2018

Jul 31 2018

Jul 26 2018

Jul 20 2018

Nanopore-tools/Plotting
masterc92f4f7241ef9be0737db63…