Homec4science
Diffusion OrientationJ (master) Browse

OrientationJ/src/imageware/ShortBuffer.java
48ddf8ee5334master

Last Change
Raw File

ShortBuffer.java
View Options

package imageware;
import ij.ImageStack;
import ij.process.ByteProcessor;
import ij.process.ColorProcessor;
import ij.process.FloatProcessor;
import ij.process.ImageProcessor;
import ij.process.ShortProcessor;
import java.awt.Image;
import java.awt.image.ImageObserver;
import java.awt.image.PixelGrabber;
/**
* Class ShortBuffer.
*
*
* @author Daniel Sage Biomedical Imaging Group Ecole Polytechnique Federale de
* Lausanne, Lausanne, Switzerland
*/
public class ShortBuffer implements Buffer {
protected Object[] data = null;
protected int nx = 0;
protected int ny = 0;
protected int nz = 0;
protected int nxy = 0;
/**
* Constructor of a empty 3D short buffer.
*
* @param nx
* size of the 3D buffer in the X axis
* @param ny
* size of the 3D buffer in the Y axis
* @param nz
* size of the 3D buffer in the Z axis
*/
protected ShortBuffer(int nx, int ny, int nz) {
this.nx = nx;
this.ny = ny;
this.nz = nz;
if (nx <= 0 || ny <= 0 || nz <= 0)
throw_constructor(nx, ny, nz);
allocate();
}
/**
* Constructor of a short buffer from a object Image of Java.
*
* @param image
* source to build a new imageware
*/
protected ShortBuffer(Image image, int mode) {
if (image == null) {
throw_constructor();
}
ImageObserver observer = null;
this.nx = image.getWidth(observer);
this.ny = image.getHeight(observer);
this.nz = 1;
this.nxy = nx * ny;
byte[] pixels = new byte[nxy];
PixelGrabber pg = new PixelGrabber(image, 0, 0, nx, ny, false);
try {
pg.grabPixels();
pixels = (byte[]) (pg.getPixels());
}
catch (Exception e) {
throw_constructor();
}
allocate();
for (int k = 0; k < nxy; k++)
((short[]) data[0])[k] = (short) (pixels[k] & 0xFF);
}
/**
* Constructor of a short buffer from a ImageStack.
*
* New data are allocated if the mode is CREATE, the imageware use the data
* of ImageJ if the mode is WRAP.
*
* @param stack
* source to build a new imageware
* @param mode
* WRAP or CREATE
*/
protected ShortBuffer(ImageStack stack, int mode) {
if (stack == null) {
throw_constructor();
}
this.nx = stack.getWidth();
this.ny = stack.getHeight();
this.nz = stack.getSize();
this.nxy = nx * ny;
switch (mode) {
case ImageWare.WRAP:
this.data = stack.getImageArray();
break;
case ImageWare.CREATE:
allocate();
ImageProcessor ip = stack.getProcessor(1);
if (ip instanceof ByteProcessor) {
Object[] vol = stack.getImageArray();
for (int z = 0; z < nz; z++) {
byte[] slice = (byte[]) vol[z];
for (int k = 0; k < nxy; k++) {
((short[]) data[z])[k] = (short) (slice[k] & 0xFF);
}
}
}
else if (ip instanceof ShortProcessor) {
Object[] vol = stack.getImageArray();
for (int z = 0; z < nz; z++) {
short[] slice = (short[]) vol[z];
for (int k = 0; k < nxy; k++) {
((short[]) data[z])[k] = (short) (slice[k] & 0xFFFF);
}
}
}
else if (ip instanceof FloatProcessor) {
Object[] vol = stack.getImageArray();
for (int z = 0; z < nz; z++) {
float[] slice = (float[]) vol[z];
for (int k = 0; k < nxy; k++) {
((short[]) data[z])[k] = (short) slice[k];
}
}
}
else if (ip instanceof ColorProcessor) {
double r, g, b;
int c;
ColorProcessor cp;
int[] pixels;
for (int z = 0; z < nz; z++) {
cp = (ColorProcessor) stack.getProcessor(z + 1);
pixels = (int[]) cp.getPixels();
for (int k = 0; k < nxy; k++) {
c = pixels[k];
r = (double) ((c & 0xFF0000) >> 16);
g = (double) ((c & 0xFF00) >> 8);
b = (double) ((c & 0xFF));
((short[]) data[z])[k] = (short) ((r + g + b) / 3.0);
}
}
}
else {
throw_constructor();
}
break;
default:
throw_constructor();
break;
}
}
/**
* Constructor of a short buffer from a specific color channel of
* ImageStack.
*
* New data are always allocated. If it is a gray image the imageware is
* created and fill up with data of the source ImageStack. If it is a color
* image only the selected channel is used to create this imageware.
*
* @param stack
* source to build a new imageware
* @param channel
* RED, GREEN or BLUE
*/
protected ShortBuffer(ImageStack stack, byte channel) {
if (stack == null) {
throw_constructor();
}
this.nx = stack.getWidth();
this.ny = stack.getHeight();
this.nz = stack.getSize();
this.nxy = nx * ny;
allocate();
ImageProcessor ip = stack.getProcessor(1);
if (ip instanceof ByteProcessor) {
Object[] vol = stack.getImageArray();
for (int z = 0; z < nz; z++) {
byte[] slice = (byte[]) vol[z];
for (int k = 0; k < nxy; k++) {
((short[]) data[z])[k] = (short) (slice[k] & 0xFF);
}
}
}
else if (ip instanceof ShortProcessor) {
Object[] vol = stack.getImageArray();
for (int z = 0; z < nz; z++) {
short[] slice = (short[]) vol[z];
for (int k = 0; k < nxy; k++) {
((short[]) data[z])[k] = (short) (slice[k] & 0xFFFF);
}
}
}
else if (ip instanceof FloatProcessor) {
Object[] vol = stack.getImageArray();
for (int z = 0; z < nz; z++) {
float[] slice = (float[]) vol[z];
for (int k = 0; k < nxy; k++) {
((short[]) data[z])[k] = (short) slice[k];
}
}
}
else if (ip instanceof ColorProcessor) {
ColorProcessor cp;
int[] pixels;
for (int z = 0; z < nz; z++) {
cp = (ColorProcessor) stack.getProcessor(z + 1);
pixels = (int[]) cp.getPixels();
switch (channel) {
case ImageWare.RED:
for (int k = 0; k < nxy; k++) {
((short[]) data[z])[k] = (short) ((pixels[k] & 0xFF0000) >> 16);
}
break;
case ImageWare.GREEN:
for (int k = 0; k < nxy; k++) {
((short[]) data[z])[k] = (short) ((pixels[k] & 0xFF00) >> 8);
}
break;
case ImageWare.BLUE:
for (int k = 0; k < nxy; k++) {
((short[]) data[z])[k] = (short) (pixels[k] & 0xFF);
}
break;
default:
throw_constructor();
}
}
}
else {
throw_constructor();
}
}
/**
* Constructor of a short buffer from a byte array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(byte[] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = 1;
this.nz = 1;
allocate();
putX(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a byte array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(byte[][] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = array[0].length;
this.nz = 1;
allocate();
putXY(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a byte array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(byte[][][] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = array[0].length;
this.nz = array[0][0].length;
allocate();
putXYZ(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a short array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(short[] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = 1;
this.nz = 1;
allocate();
putX(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a short array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(short[][] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = array[0].length;
this.nz = 1;
allocate();
putXY(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a short array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(short[][][] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = array[0].length;
this.nz = array[0][0].length;
allocate();
putXYZ(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a float array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(float[] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = 1;
this.nz = 1;
allocate();
putX(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a float array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(float[][] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = array[0].length;
this.nz = 1;
allocate();
putXY(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a float array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(float[][][] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = array[0].length;
this.nz = array[0][0].length;
allocate();
putXYZ(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a double array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(double[] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = 1;
this.nz = 1;
allocate();
putX(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a double array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(double[][] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = array[0].length;
this.nz = 1;
allocate();
putXY(0, 0, 0, array);
}
/**
* Constructor of a short buffer from a double array.
*
* @param array
* source to build this new imageware
*/
protected ShortBuffer(double[][][] array, int mode) {
if (array == null) {
throw_constructor();
}
this.nx = array.length;
this.ny = array[0].length;
this.nz = array[0][0].length;
allocate();
putXYZ(0, 0, 0, array);
}
/**
* Return the type of this imageware.
*
* @return the type of this imageware
*/
public int getType() {
return ImageWare.SHORT;
}
/**
* Return the type of this imageware in a string format.
*
* @return the type of this imageware translated in a string format
*/
public String getTypeToString() {
return "Short";
}
/**
* Return the number of dimension of this imageware (1, 2 or 3).
*
* @return the number of dimension of this imageware
*/
public int getDimension() {
int dims = 0;
dims += (nx > 1 ? 1 : 0);
dims += (ny > 1 ? 1 : 0);
dims += (nz > 1 ? 1 : 0);
return dims;
}
/**
* Return the size of the imageware int[0] : x, int[1] : y, int[2] : z.
*
* @return an array given the size of the imageware
*/
public int[] getSize() {
int[] size = { nx, ny, nz };
return size;
}
/**
* Return the size in the X axis.
*
* @return the size in the X axis
*/
public int getSizeX() {
return nx;
}
/**
* Return the size in the Y axis.
*
* @return the size in the Y axis
*/
public int getSizeY() {
return ny;
}
/**
* Return the size in the Z axis.
*
* @return the size in the Z axis
*/
public int getSizeZ() {
return nz;
}
/**
* Return the size in the X axis.
*
* @return the size in the X axis
*/
public int getWidth() {
return nx;
}
/**
* Return the size in the Y axis.
*
* @return the size in the Y axis
*/
public int getHeight() {
return ny;
}
/**
* Return the size in the Z axis.
*
* @return the size in the Z axis
*/
public int getDepth() {
return nz;
}
/**
* Return the number of pixels in the imageware.
*
* @return number of pixels in the imageware
*/
public int getTotalSize() {
return nxy * nz;
}
/**
* Return true is this imageware has the same size the imageware given as
* parameter.
*
* @param imageware
* imageware to be compared
* @return true if the imageware of the same size than this imageware
*/
public boolean isSameSize(ImageWare imageware) {
if (nx != imageware.getSizeX())
return false;
if (ny != imageware.getSizeY())
return false;
if (nz != imageware.getSizeZ())
return false;
return true;
}
// ------------------------------------------------------------------
//
// put Section
//
// ------------------------------------------------------------------
/**
* Put an array into the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* ImageWare object to put into the imageware
*/
public void putX(int x, int y, int z, ImageWare buffer) {
int bnx = buffer.getSizeX();
double buf[] = new double[bnx];
buffer.getX(0, 0, 0, buf);
putX(x, y, z, buf);
}
/**
* Put an array into the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* ImageWare object to put into the imageware
*/
public void putY(int x, int y, int z, ImageWare buffer) {
int bny = buffer.getSizeY();
double buf[] = new double[bny];
buffer.getY(0, 0, 0, buf);
putY(x, y, z, buf);
}
/**
* Put an array into the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* ImageWare object to put into the imageware
*/
public void putZ(int x, int y, int z, ImageWare buffer) {
int bnz = buffer.getSizeZ();
double buf[] = new double[bnz];
buffer.getZ(0, 0, 0, buf);
putZ(x, y, z, buf);
}
/**
* Put an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* ImageWare object to put into the imageware
*/
public void putXY(int x, int y, int z, ImageWare buffer) {
int bnx = buffer.getSizeX();
int bny = buffer.getSizeY();
double buf[][] = new double[bnx][bny];
buffer.getXY(0, 0, 0, buf);
putXY(x, y, z, buf);
}
/**
* Put an array into the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* ImageWare object to put into the imageware
*/
public void putXZ(int x, int y, int z, ImageWare buffer) {
int bnx = buffer.getSizeX();
int bnz = buffer.getSizeZ();
double buf[][] = new double[bnx][bnz];
buffer.getXZ(0, 0, 0, buf);
putXZ(x, y, z, buf);
}
/**
* Put an array into the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* ImageWare object to put into the imageware
*/
public void putYZ(int x, int y, int z, ImageWare buffer) {
int bny = buffer.getSizeY();
int bnz = buffer.getSizeZ();
double buf[][] = new double[bny][bnz];
buffer.getYZ(0, 0, 0, buf);
putYZ(x, y, z, buf);
}
/**
* Put an array into the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* ImageWare object to put into the imageware
*/
public void putXYZ(int x, int y, int z, ImageWare buffer) {
int bnx = buffer.getSizeX();
int bny = buffer.getSizeY();
int bnz = buffer.getSizeZ();
double buf[][][] = new double[bnx][bny][bnz];
buffer.getXYZ(0, 0, 0, buf);
putXYZ(x, y, z, buf);
}
/**
* Put an array into the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* byte 1D array to put into the imageware
*/
public void putX(int x, int y, int z, byte[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
tmp[offset] = (short) (buffer[i] & 0xFF);
offset++;
}
}
catch (Exception e) {
throw_put("X", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* short 1D array to put into the imageware
*/
public void putX(int x, int y, int z, short[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
System.arraycopy(buffer, 0, tmp, offset, leni);
}
catch (Exception e) {
throw_put("X", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* float 1D array to put into the imageware
*/
public void putX(int x, int y, int z, float[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
tmp[offset] = (short) (buffer[i]);
offset++;
}
}
catch (Exception e) {
throw_put("X", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* double 1D array to put into the imageware
*/
public void putX(int x, int y, int z, double[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
tmp[offset] = (short) (buffer[i]);
offset++;
}
}
catch (Exception e) {
throw_put("X", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* byte 1D array to put into the imageware
*/
public void putY(int x, int y, int z, byte[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
tmp[offset] = (short) (buffer[i] & 0xFF);
offset += nx;
}
}
catch (Exception e) {
throw_put("Y", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* short 1D array to put into the imageware
*/
public void putY(int x, int y, int z, short[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
tmp[offset] = (short) (buffer[i] & 0xFFFF);
offset += nx;
}
}
catch (Exception e) {
throw_put("Y", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* float 1D array to put into the imageware
*/
public void putY(int x, int y, int z, float[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
tmp[offset] = (short) (buffer[i]);
offset += nx;
}
}
catch (Exception e) {
throw_put("Y", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* double 1D array to put into the imageware
*/
public void putY(int x, int y, int z, double[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
tmp[offset] = (short) (buffer[i]);
offset += nx;
}
}
catch (Exception e) {
throw_put("Y", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* bybytete 1D array to put into the imageware
*/
public void putZ(int x, int y, int z, byte[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
for (int i = 0; i < leni; i++) {
((short[]) data[z])[offset] = (short) (buffer[i] & 0xFF);
z++;
}
}
catch (Exception e) {
throw_put("Z", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* byshortte 1D array to put into the imageware
*/
public void putZ(int x, int y, int z, short[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
for (int i = 0; i < leni; i++) {
((short[]) data[z])[offset] = (short) (buffer[i] & 0xFFFF);
z++;
}
}
catch (Exception e) {
throw_put("Z", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* byfloatte 1D array to put into the imageware
*/
public void putZ(int x, int y, int z, float[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
for (int i = 0; i < leni; i++) {
((short[]) data[z])[offset] = (short) (buffer[i]);
z++;
}
}
catch (Exception e) {
throw_put("Z", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* bydoublete 1D array to put into the imageware
*/
public void putZ(int x, int y, int z, double[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
for (int i = 0; i < leni; i++) {
((short[]) data[z])[offset] = (short) (buffer[i]);
z++;
}
}
catch (Exception e) {
throw_put("Z", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* byte 2D array to put into the imageware
*/
public void putXY(int x, int y, int z, byte[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (y + j) * nx;
for (int i = 0; i < leni; i++, offset++) {
tmp[offset] = (short) (buffer[i][j] & 0xFF);
}
}
}
catch (Exception e) {
throw_put("XY", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* short 2D array to put into the imageware
*/
public void putXY(int x, int y, int z, short[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (y + j) * nx;
for (int i = 0; i < leni; i++, offset++) {
tmp[offset] = (short) (buffer[i][j] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_put("XY", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* float 2D array to put into the imageware
*/
public void putXY(int x, int y, int z, float[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (y + j) * nx;
for (int i = 0; i < leni; i++, offset++) {
tmp[offset] = (short) (buffer[i][j]);
}
}
}
catch (Exception e) {
throw_put("XY", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* double 2D array to put into the imageware
*/
public void putXY(int x, int y, int z, double[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (y + j) * nx;
for (int i = 0; i < leni; i++, offset++) {
tmp[offset] = (short) (buffer[i][j]);
}
}
}
catch (Exception e) {
throw_put("XY", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* byte 2D array to put into the imageware
*/
public void putXZ(int x, int y, int z, byte[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++) {
offset = x + j * nx;
for (int i = 0; i < leni; i++, offset++) {
((short[]) data[z])[offset] = (short) (buffer[i][j] & 0xFF);
}
}
}
catch (Exception e) {
throw_put("YZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* short 2D array to put into the imageware
*/
public void putXZ(int x, int y, int z, short[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++) {
offset = x + j * nx;
for (int i = 0; i < leni; i++, offset++) {
((short[]) data[z])[offset] = (short) (buffer[i][j] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_put("YZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* float 2D array to put into the imageware
*/
public void putXZ(int x, int y, int z, float[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++) {
offset = x + j * nx;
for (int i = 0; i < leni; i++, offset++) {
((short[]) data[z])[offset] = (short) (buffer[i][j]);
}
}
}
catch (Exception e) {
throw_put("YZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* double 2D array to put into the imageware
*/
public void putXZ(int x, int y, int z, double[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++) {
offset = x + j * nx;
for (int i = 0; i < leni; i++, offset++) {
((short[]) data[z])[offset] = (short) (buffer[i][j]);
}
}
}
catch (Exception e) {
throw_put("YZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* byte 2D array to put into the imageware
*/
public void putYZ(int x, int y, int z, byte[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++, offset = (x + nx * y))
for (int i = 0; i < leni; i++, offset += nx) {
((short[]) data[z])[offset] = (short) (buffer[i][j] & 0xFF);
}
}
catch (Exception e) {
throw_put("XZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* short 2D array to put into the imageware
*/
public void putYZ(int x, int y, int z, short[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++, offset = (x + nx * y))
for (int i = 0; i < leni; i++, offset += nx) {
((short[]) data[z])[offset] = (short) (buffer[i][j] & 0xFFFF);
}
}
catch (Exception e) {
throw_put("XZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* float 2D array to put into the imageware
*/
public void putYZ(int x, int y, int z, float[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++, offset = (x + nx * y))
for (int i = 0; i < leni; i++, offset += nx) {
((short[]) data[z])[offset] = (short) (buffer[i][j]);
}
}
catch (Exception e) {
throw_put("XZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* double 2D array to put into the imageware
*/
public void putYZ(int x, int y, int z, double[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++, offset = (x + nx * y))
for (int i = 0; i < leni; i++, offset += nx) {
((short[]) data[z])[offset] = (short) (buffer[i][j]);
}
}
catch (Exception e) {
throw_put("XZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* byte 3D array to put into the imageware
*/
public void putXYZ(int x, int y, int z, byte[][][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
int lenk = buffer[0][0].length;
for (int k = 0; k < lenk; k++, z++) {
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (j + y) * nx;
for (int i = 0; i < leni; i++, offset++) {
tmp[offset] = (short) (buffer[i][j][k] & 0xFF);
}
}
}
}
catch (Exception e) {
throw_put("XYZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* short 3D array to put into the imageware
*/
public void putXYZ(int x, int y, int z, short[][][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
int lenk = buffer[0][0].length;
for (int k = 0; k < lenk; k++, z++) {
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (j + y) * nx;
for (int i = 0; i < leni; i++, offset++) {
tmp[offset] = (short) (buffer[i][j][k] & 0xFFFF);
}
}
}
}
catch (Exception e) {
throw_put("XYZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* float 3D array to put into the imageware
*/
public void putXYZ(int x, int y, int z, float[][][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
int lenk = buffer[0][0].length;
for (int k = 0; k < lenk; k++, z++) {
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (j + y) * nx;
for (int i = 0; i < leni; i++, offset++) {
tmp[offset] = (short) (buffer[i][j][k]);
}
}
}
}
catch (Exception e) {
throw_put("XYZ", "No check", buffer, x, y, z);
}
}
/**
* Put an array into the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to put the buffer
* @param y
* Y starting position to put the buffer
* @param z
* Z starting position to put the buffer
* @param buffer
* double 3D array to put into the imageware
*/
public void putXYZ(int x, int y, int z, double[][][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
int lenk = buffer[0][0].length;
for (int k = 0; k < lenk; k++, z++) {
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (j + y) * nx;
for (int i = 0; i < leni; i++, offset++) {
tmp[offset] = (short) (buffer[i][j][k]);
}
}
}
}
catch (Exception e) {
throw_put("XYZ", "No check", buffer, x, y, z);
}
}
// ------------------------------------------------------------------
//
// get Section
//
// ------------------------------------------------------------------
/**
* Get an array from the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* ImageWare object to get into the imageware
*/
public void getX(int x, int y, int z, ImageWare buffer) {
int bnx = buffer.getSizeX();
double buf[] = new double[bnx];
getX(x, y, z, buf);
buffer.putX(0, 0, 0, buf);
}
/**
* Get an array from the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* ImageWare object to get into the imageware
*/
public void getY(int x, int y, int z, ImageWare buffer) {
int bny = buffer.getSizeY();
double buf[] = new double[bny];
getY(x, y, z, buf);
buffer.putY(0, 0, 0, buf);
}
/**
* Get an array from the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* ImageWare object to get into the imageware
*/
public void getZ(int x, int y, int z, ImageWare buffer) {
int bnz = buffer.getSizeZ();
double buf[] = new double[bnz];
getZ(x, y, z, buf);
buffer.putZ(0, 0, 0, buf);
}
/**
* get an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* ImageWare object to get into the imageware
*/
public void getXY(int x, int y, int z, ImageWare buffer) {
int bnx = buffer.getSizeX();
int bny = buffer.getSizeY();
double buf[][] = new double[bnx][bny];
getXY(x, y, z, buf);
buffer.putXY(0, 0, 0, buf);
}
/**
* Get an array from the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* ImageWare object to get into the imageware
*/
public void getXZ(int x, int y, int z, ImageWare buffer) {
int bnx = buffer.getSizeX();
int bnz = buffer.getSizeZ();
double buf[][] = new double[bnx][bnz];
getXZ(x, y, z, buf);
buffer.putXZ(0, 0, 0, buf);
}
/**
* Get an array from the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* ImageWare object to get into the datase
*/
public void getYZ(int x, int y, int z, ImageWare buffer) {
int bny = buffer.getSizeY();
int bnz = buffer.getSizeZ();
double buf[][] = new double[bny][bnz];
getYZ(x, y, z, buf);
buffer.putYZ(0, 0, 0, buf);
}
/**
* Get an array from the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* ImageWare object to get into the imageware
*/
public void getXYZ(int x, int y, int z, ImageWare buffer) {
int bnx = buffer.getSizeX();
int bny = buffer.getSizeY();
int bnz = buffer.getSizeZ();
double buf[][][] = new double[bnx][bny][bnz];
getXYZ(x, y, z, buf);
buffer.putXYZ(0, 0, 0, buf);
}
/**
* Get an array from the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* byte 1D array to get into the imageware
*/
public void getX(int x, int y, int z, byte[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
buffer[i] = (byte) (tmp[offset] & 0xffff);
offset++;
}
}
catch (Exception e) {
throw_get("X", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* short 1D array to get into the imageware
*/
public void getX(int x, int y, int z, short[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
System.arraycopy(tmp, offset, buffer, 0, leni);
}
catch (Exception e) {
throw_get("X", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* float 1D array to get into the imageware
*/
public void getX(int x, int y, int z, float[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
buffer[i] = (float) (tmp[offset] & 0xffff);
offset++;
}
}
catch (Exception e) {
throw_get("X", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in X axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* double 1D array to get into the imageware
*/
public void getX(int x, int y, int z, double[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
buffer[i] = (double) (tmp[offset] & 0xffff);
offset++;
}
}
catch (Exception e) {
throw_get("X", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* byte 1D array to get into the imageware
*/
public void getY(int x, int y, int z, byte[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
buffer[i] = (byte) (tmp[offset] & 0xFFFF);
offset += nx;
}
}
catch (Exception e) {
throw_get("X", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* short 1D array to get into the imageware
*/
public void getY(int x, int y, int z, short[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
buffer[i] = (short) (tmp[offset] & 0xFFFF);
offset += nx;
}
}
catch (Exception e) {
throw_get("X", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* float 1D array to get into the imageware
*/
public void getY(int x, int y, int z, float[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
buffer[i] = (float) (tmp[offset] & 0xFFFF);
offset += nx;
}
}
catch (Exception e) {
throw_get("X", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in Y axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* double 1D array to get into the imageware
*/
public void getY(int x, int y, int z, double[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
short[] tmp = (short[]) data[z];
for (int i = 0; i < leni; i++) {
buffer[i] = (double) (tmp[offset] & 0xFFFF);
offset += nx;
}
}
catch (Exception e) {
throw_get("X", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* byte 1D array to get into the imageware
*/
public void getZ(int x, int y, int z, byte[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
for (int i = 0; i < leni; i++) {
buffer[i] = (byte) (((short[]) data[z])[offset] & 0xFFFF);
z++;
}
}
catch (Exception e) {
throw_get("Y", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* short 1D array to get into the imageware
*/
public void getZ(int x, int y, int z, short[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
for (int i = 0; i < leni; i++) {
buffer[i] = (short) (((short[]) data[z])[offset] & 0xFFFF);
z++;
}
}
catch (Exception e) {
throw_get("Y", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* float 1D array to get into the imageware
*/
public void getZ(int x, int y, int z, float[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
for (int i = 0; i < leni; i++) {
buffer[i] = (float) (((short[]) data[z])[offset] & 0xFFFF);
z++;
}
}
catch (Exception e) {
throw_get("Y", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in Z axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* double 1D array to get into the imageware
*/
public void getZ(int x, int y, int z, double[] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
for (int i = 0; i < leni; i++) {
buffer[i] = (double) (((short[]) data[z])[offset] & 0xFFFF);
z++;
}
}
catch (Exception e) {
throw_get("Y", "No check", buffer, x, y, z);
}
}
/**
* get an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* byte 2D array to get into the imageware
*/
public void getXY(int x, int y, int z, byte[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (y + j) * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j] = (byte) (tmp[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("XY", "No check", buffer, x, y, z);
}
}
/**
* get an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* short 2D array to get into the imageware
*/
public void getXY(int x, int y, int z, short[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (y + j) * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j] = (short) (tmp[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("XY", "No check", buffer, x, y, z);
}
}
/**
* get an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* float 2D array to get into the imageware
*/
public void getXY(int x, int y, int z, float[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (y + j) * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j] = (float) (tmp[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("XY", "No check", buffer, x, y, z);
}
}
/**
* get an array into the imageware at the position (x,y,z) in XY axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* double 2D array to get into the imageware
*/
public void getXY(int x, int y, int z, double[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (y + j) * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j] = (double) (tmp[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("XY", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* byte 2D array to get into the imageware
*/
public void getXZ(int x, int y, int z, byte[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++) {
offset = x + y * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j] = (byte) (((short[]) data[z])[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("XZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* short 2D array to get into the imageware
*/
public void getXZ(int x, int y, int z, short[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++) {
offset = x + y * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j] = (short) (((short[]) data[z])[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("XZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* float 2D array to get into the imageware
*/
public void getXZ(int x, int y, int z, float[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++) {
offset = x + y * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j] = (float) (((short[]) data[z])[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("XZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in XZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* double 2D array to get into the imageware
*/
public void getXZ(int x, int y, int z, double[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++) {
offset = x + y * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j] = (double) (((short[]) data[z])[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("XZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* byte 2D array to get into the datase
*/
public void getYZ(int x, int y, int z, byte[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++, offset = (x + nx * y)) {
for (int i = 0; i < leni; i++, offset += nx) {
buffer[i][j] = (byte) (((short[]) data[z])[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("YZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* short 2D array to get into the datase
*/
public void getYZ(int x, int y, int z, short[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++, offset = (x + nx * y)) {
for (int i = 0; i < leni; i++, offset += nx) {
buffer[i][j] = (short) (((short[]) data[z])[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("YZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* float 2D array to get into the datase
*/
public void getYZ(int x, int y, int z, float[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++, offset = (x + nx * y)) {
for (int i = 0; i < leni; i++, offset += nx) {
buffer[i][j] = (float) (((short[]) data[z])[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("YZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in YZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* double 2D array to get into the datase
*/
public void getYZ(int x, int y, int z, double[][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
for (int j = 0; j < lenj; j++, z++, offset = (x + nx * y)) {
for (int i = 0; i < leni; i++, offset += nx) {
buffer[i][j] = (double) (((short[]) data[z])[offset] & 0xFFFF);
}
}
}
catch (Exception e) {
throw_get("YZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* byte 3D array to get into the imageware
*/
public void getXYZ(int x, int y, int z, byte[][][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
int lenk = buffer[0][0].length;
for (int k = 0; k < lenk; k++, z++) {
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (j + y) * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j][k] = (byte) (tmp[offset] & 0xFFFF);
}
}
}
}
catch (Exception e) {
throw_get("XYZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* short 3D array to get into the imageware
*/
public void getXYZ(int x, int y, int z, short[][][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
int lenk = buffer[0][0].length;
for (int k = 0; k < lenk; k++, z++) {
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (j + y) * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j][k] = (short) (tmp[offset] & 0xFFFF);
}
}
}
}
catch (Exception e) {
throw_get("XYZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* float 3D array to get into the imageware
*/
public void getXYZ(int x, int y, int z, float[][][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
int lenk = buffer[0][0].length;
for (int k = 0; k < lenk; k++, z++) {
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (j + y) * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j][k] = (float) (tmp[offset] & 0xFFFF);
}
}
}
}
catch (Exception e) {
throw_get("XYZ", "No check", buffer, x, y, z);
}
}
/**
* Get an array from the imageware at the position (x,y,z) in XYZ axis. No
* check are performed if the array is outside of the imageware.
*
* @param x
* X starting position to get the buffer
* @param y
* Y starting position to get the buffer
* @param z
* Z starting position to get the buffer
* @param buffer
* double 3D array to get into the imageware
*/
public void getXYZ(int x, int y, int z, double[][][] buffer) {
try {
int offset = x + y * nx;
int leni = buffer.length;
int lenj = buffer[0].length;
int lenk = buffer[0][0].length;
for (int k = 0; k < lenk; k++, z++) {
short[] tmp = (short[]) data[z];
for (int j = 0; j < lenj; j++) {
offset = x + (j + y) * nx;
for (int i = 0; i < leni; i++, offset++) {
buffer[i][j][k] = (double) (tmp[offset] & 0xFFFF);
}
}
}
}
catch (Exception e) {
throw_get("XYZ", "No check", buffer, x, y, z);
}
}
// ------------------------------------------------------------------
//
// Private Section
//
// ------------------------------------------------------------------
/**
* Prepare a complete error message from the errors coming the constructors.
*/
protected void throw_constructor() {
throw new ArrayStoreException("\n-------------------------------------------------------\n" + "Error in imageware package\n" + "Unable to create a short imageware.\n"
+ "-------------------------------------------------------\n");
}
/**
* Prepare a complete error message from the errors coming the constructors.
*/
protected void throw_constructor(int nx, int ny, int nz) {
throw new ArrayStoreException("\n-------------------------------------------------------\n" + "Error in imageware package\n" + "Unable to create a short imageware " + nx + "," + ny
+ "," + nz + "].\n" + "-------------------------------------------------------\n");
}
/**
* Prepare a complete error message from the errors coming the get routines.
*/
protected void throw_get(String direction, String border, Object buffer, int x, int y, int z) {
int leni = 0;
int lenj = 0;
int lenk = 0;
String type = " unknown type";
if (buffer instanceof byte[]) {
leni = ((byte[]) buffer).length;
type = " 1D byte";
}
else if (buffer instanceof short[]) {
leni = ((short[]) buffer).length;
type = " 1D short";
}
else if (buffer instanceof float[]) {
leni = ((float[]) buffer).length;
type = " 1D float";
}
else if (buffer instanceof double[]) {
leni = ((double[]) buffer).length;
type = " 1D double";
}
else if (buffer instanceof byte[][]) {
leni = ((byte[][]) buffer).length;
lenj = ((byte[][]) buffer)[0].length;
type = " 2D byte";
}
else if (buffer instanceof short[][]) {
leni = ((short[][]) buffer).length;
lenj = ((short[][]) buffer)[0].length;
type = " 2D short";
}
else if (buffer instanceof float[][]) {
leni = ((float[][]) buffer).length;
lenj = ((float[][]) buffer)[0].length;
type = " 2D float";
}
else if (buffer instanceof double[][]) {
leni = ((double[][]) buffer).length;
lenj = ((double[][]) buffer)[0].length;
type = " 2D double";
}
else if (buffer instanceof byte[][][]) {
leni = ((byte[][][]) buffer).length;
lenj = ((byte[][][]) buffer)[0].length;
lenk = ((byte[][][]) buffer)[0][0].length;
type = " 3D byte";
}
else if (buffer instanceof short[][][]) {
leni = ((short[][][]) buffer).length;
lenj = ((short[][][]) buffer)[0].length;
lenk = ((short[][][]) buffer)[0][0].length;
type = " 3D short";
}
else if (buffer instanceof float[][][]) {
leni = ((float[][][]) buffer).length;
lenj = ((float[][][]) buffer)[0].length;
lenk = ((float[][][]) buffer)[0][0].length;
type = " 3D float";
}
else if (buffer instanceof double[][][]) {
leni = ((double[][][]) buffer).length;
lenj = ((double[][][]) buffer)[0].length;
lenk = ((double[][][]) buffer)[0][0].length;
type = " 3D double";
}
throw new ArrayStoreException("\n-------------------------------------------------------\n" + "Error in imageware package\n" + "Unable to get a" + type + " buffer ["
+ (leni == 0 ? "" : ("" + leni)) + (lenj == 0 ? "" : ("," + lenj)) + (lenk == 0 ? "" : ("," + lenk)) + "] \n" + "from the short imageware [" + nx + "," + ny + "," + nz + "]\n"
+ "at the position (" + x + "," + y + "," + z + ") in direction " + direction + "\n" + "using " + border + ".\n" + "-------------------------------------------------------\n");
}
/**
* Prepare a complete error message from the errors coming the put routines.
*/
protected void throw_put(String direction, String border, Object buffer, int x, int y, int z) {
int leni = 0;
int lenj = 0;
int lenk = 0;
String type = " unknown type";
if (buffer instanceof byte[]) {
leni = ((byte[]) buffer).length;
type = " 1D byte";
}
else if (buffer instanceof short[]) {
leni = ((short[]) buffer).length;
type = " 1D short";
}
else if (buffer instanceof float[]) {
leni = ((float[]) buffer).length;
type = " 1D float";
}
else if (buffer instanceof double[]) {
leni = ((double[]) buffer).length;
type = " 1D double";
}
else if (buffer instanceof byte[][]) {
leni = ((byte[][]) buffer).length;
lenj = ((byte[][]) buffer)[0].length;
type = " 2D byte";
}
else if (buffer instanceof short[][]) {
leni = ((short[][]) buffer).length;
lenj = ((short[][]) buffer)[0].length;
type = " 2D short";
}
else if (buffer instanceof float[][]) {
leni = ((float[][]) buffer).length;
lenj = ((float[][]) buffer)[0].length;
type = " 2D float";
}
else if (buffer instanceof double[][]) {
leni = ((double[][]) buffer).length;
lenj = ((double[][]) buffer)[0].length;
type = " 2D double";
}
else if (buffer instanceof byte[][][]) {
leni = ((byte[][][]) buffer).length;
lenj = ((byte[][][]) buffer)[0].length;
lenk = ((byte[][][]) buffer)[0][0].length;
type = " 3D byte";
}
else if (buffer instanceof short[][][]) {
leni = ((short[][][]) buffer).length;
lenj = ((short[][][]) buffer)[0].length;
lenk = ((short[][][]) buffer)[0][0].length;
type = " 3D short";
}
else if (buffer instanceof float[][][]) {
leni = ((float[][][]) buffer).length;
lenj = ((float[][][]) buffer)[0].length;
lenk = ((float[][][]) buffer)[0][0].length;
type = " 3D float";
}
else if (buffer instanceof double[][][]) {
leni = ((double[][][]) buffer).length;
lenj = ((double[][][]) buffer)[0].length;
lenk = ((double[][][]) buffer)[0][0].length;
type = " 3D double";
}
throw new ArrayStoreException("\n-------------------------------------------------------\n" + "Error in imageware package\n" + "Unable to put a" + type + " buffer ["
+ (leni == 0 ? "" : ("" + leni)) + (lenj == 0 ? "" : ("," + lenj)) + (lenk == 0 ? "" : ("," + lenk)) + "] \n" + "into the short imageware [" + nx + "," + ny + "," + nz + "]\n"
+ "at the position (" + x + "," + y + "," + z + ") in direction " + direction + "\n" + "using " + border + ".\n" + "-------------------------------------------------------\n");
}
// ------------------------------------------------------------------
//
// Get slice fast and direct access Section
//
// ------------------------------------------------------------------
/**
* Get a reference of the whole volume data.
*
* @return a reference of the data of this imageware
*/
public Object[] getVolume() {
return data;
}
/**
* Get a specific slice, fast and direct access, but only for byte
* imageware.
*
* @param z
* number of the requested slice
* @return a reference of the data of one slice of this imageware
*/
public byte[] getSliceByte(int z) {
return null;
}
/**
* Get a specific slice, fast and direct access, but only for short
* imageware.
*
* @param z
* number of the requested slice
* @return a reference of the data of one slice of this imageware
*/
public short[] getSliceShort(int z) {
return (short[]) data[z];
}
/**
* Get a specific slice, fast and direct access, but only for float
* imageware.
*
* @param z
* number of the requested slice
* @return a reference of the data of one slice of this imageware
*/
public float[] getSliceFloat(int z) {
return null;
}
/**
* Get a specific slice, fast and direct access, but only for double
* imageware.
*
* @param z
* number of the requested slice
* @return a reference of the data of one slice of this imageware
*/
public double[] getSliceDouble(int z) {
return null;
}
/**
* Allocate a buffer of size [nx,ny,nz].
*/
private void allocate() {
try {
this.data = new Object[nz];
this.nxy = nx * ny;
for (int z = 0; z < nz; z++)
this.data[z] = new short[nxy];
}
catch (Exception e) {
throw_constructor(nx, ny, nz);
}
}
} // end of class
c4science · Help