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oococt.c
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#ifndef lint
static const char RCSid[] = "$Id: oococt.c,v 2.4 2017/08/14 21:12:10 rschregle Exp $";
#endif
/*
======================================================================
Out-of-core octree data structure
Roland Schregle (roland.schregle@{hslu.ch, gmail.com})
(c) Lucerne University of Applied Sciences and Arts,
supported by the Swiss National Science Foundation (SNSF, #147053)
======================================================================
$Id: oococt.c,v 2.4 2017/08/14 21:12:10 rschregle Exp $
*/
#if !defined(_WIN32) && !defined(_WIN64) || defined(PMAP_OOC)
/* No Windoze support for now */
#include "oococt.h"
#include "rtio.h"
#include <stdlib.h>
#include <unistd.h>
void OOC_Null (OOC_Octree *oct)
/* Init empty octree */
{
oct -> maxNodes = oct -> numNodes = oct -> leafMax = oct -> maxDepth =
oct -> numData = oct -> size = oct -> recSize = oct -> mortonScale = 0;
oct -> org [0] = oct -> org [1] = oct -> org [2] =
oct -> bound [0] = oct -> bound [1] = oct -> bound [2] = 0;
oct -> key = NULL;
oct -> nodes = NULL;
oct -> leafFile = NULL;
oct -> cache = NULL;
}
void OOC_Init (OOC_Octree *oct, unsigned recSize, FVECT org, RREAL size,
RREAL *(*key)(const void*), FILE *leafFile
)
{
oct -> maxNodes = oct -> numNodes = oct -> leafMax =
oct -> maxDepth = oct -> numData = 0;
VCOPY(oct -> org, org);
oct -> size = oct -> bound[0] = oct -> bound[1] = oct -> bound[2] = size;
VADD(oct -> bound, oct -> bound, org);
oct -> mortonScale = size > 0 ? MORTON3D_MAX / size : 0;
oct -> recSize = recSize;
oct -> key = key;
oct -> nodes = NULL;
oct -> leafFile = leafFile;
oct -> cache = NULL; /* Cache currently initialised externally */
}
OOC_Node *NewNode (OOC_Octree *oct)
/* Allocate new octree node, enlarge array if necessary.
Return pointer to new node or NULL if failed. */
{
OOC_Node *n = NULL;
if (oct -> numNodes >= OOC_NODEIDX_MAX) {
/* Node index overflow */
fprintf(stderr, "OOC_NewNode: node index overflow (numNodes = %d)\n",
oct -> numNodes
);
return NULL;
}
if (++oct -> numNodes > oct -> maxNodes) {
/* Need to allocate root or enlarge array */
oct -> maxNodes += OOC_BLKSIZE / sizeof(OOC_Node);
oct -> nodes = realloc(oct -> nodes,
oct -> maxNodes * sizeof(OOC_Node)
);
if (!oct -> nodes) {
perror("OOC_NewNode: couldn't realloc() nodes");
return NULL;
}
}
n = oct -> nodes + oct -> numNodes - 1;
n -> node.num = n -> node.kid = n -> node.branch = n -> node.type = 0;
return n;
}
int OOC_GetData (OOC_Octree *oct, OOC_DataIdx idx, void *rec)
/* Reads indexed data record from leaf file and copies it to rec, else
* returns -1 on failure */
{
if (!oct || !rec)
return -1;
if (idx >= oct -> numData) {
fprintf(stderr, "OOC_GetData: invalid data record index %u\n", idx);
return -1;
}
if (oct -> cache) {
/* Retrieve record from leaf file via I/O cache */
void *cachedRec;
if (!(cachedRec = OOC_CacheData(oct -> cache, oct -> leafFile, idx)))
return -1;
/* It's safer to copy the record to the caller's local buffer as a
* returned pointer may be invalidated by subsequent calls if the
* page it points to is swapped out */
memcpy(rec, cachedRec, oct -> recSize);
}
else {
/* No I/O caching; do (SLOW!) per-record I/O from leaf file */
const unsigned long pos = (unsigned long)oct -> recSize * idx;
if (pread(fileno(oct -> leafFile), rec, oct -> recSize, pos) !=
oct -> recSize) {
perror("OOC_GetData: failed seek/read in leaf file");
return -1;
}
}
return 0;
}
int OOC_InBBox (const OOC_Octree *oct, const FVECT org, RREAL size,
const FVECT key
)
/* Check whether key lies within bounding box defined by org and size.
* Compares Morton codes rather than the coordinates directly to account
* for dicretisation error introduced by the former. */
{
const MortonIdx keyZ = OOC_KEY2MORTON(key, oct);
FVECT bbox = {size, size, size};
VADD(bbox, org, bbox);
return keyZ > OOC_KEY2MORTON(org, oct) && keyZ < OOC_KEY2MORTON(bbox, oct);
}
int OOC_Branch (const OOC_Octree *oct, const FVECT org, RREAL size,
const FVECT key, FVECT nuOrg
)
/* Return index of octant containing key and corresponding origin if nuOrg
* != NULL, or -1 if key lies outside all octants. Size is already assumed
* to be halved, i.e. corresponding to the length of an octant axis.
* Compares Morton codes rather than the coordinates directly to account
* for dicretisation error introduced by the former. */
{
int o;
FVECT octOrg;
for (o = 0; o < 8; o++) {
VCOPY(octOrg, org);
OOC_OCTORIGIN(octOrg, o, size);
if (OOC_InBBox(oct, octOrg, size, key)) {
if (nuOrg)
VCOPY(nuOrg, octOrg);
return o;
}
}
return -1;
}
int OOC_BranchZ (const OOC_Octree *oct, const FVECT org, RREAL size,
MortonIdx keyZ, FVECT nuOrg
)
/* Optimised version of OOC_Branch() with precomputed key Morton code */
{
int o;
const FVECT cent = {size, size, size};
FVECT octOrg, bbox;
for (o = 0; o < 8; o++) {
VCOPY(octOrg, org);
OOC_OCTORIGIN(octOrg, o, size);
VADD(bbox, octOrg, cent);
if (keyZ > OOC_KEY2MORTON(octOrg, oct) &&
keyZ < OOC_KEY2MORTON(bbox, oct)
) {
if (nuOrg)
VCOPY(nuOrg, octOrg);
return o;
}
}
return -1;
}
OOC_DataIdx OOC_GetKid (const OOC_Octree *oct, OOC_Node **node, unsigned kid)
/* For a given octree node, return the sum of the data counters for kids
* [0..k-1]. On return, the node either points to the k'th kid, or
* NULL if the kid is nonexistent or the node is a leaf */
{
unsigned k;
OOC_Node *kidNode = OOC_KID1(oct, *node); /* NULL if leaf */
OOC_DataIdx dataIdx = 0;
for (k = 0; k < kid; k++) {
if (OOC_ISLEAF(*node))
/* Sum data counters of leaf octants */
dataIdx += (*node) -> leaf.num [k];
else
/* Sum data counter of inner node's nonempty kids and advance
* pointer to sibling */
if (OOC_ISBRANCH(*node, k)) {
dataIdx += OOC_DATACNT(kidNode);
kidNode++;
}
}
/* Update node pointer to selected kid (or NULL if nonexistent or node is
* a leaf) */
*node = OOC_ISBRANCH(*node, kid) ? kidNode : NULL;
return dataIdx;
}
#ifdef DEBUG_OOC
int OOC_Check (OOC_Octree *oct, const OOC_Node *node,
FVECT org, RREAL size, OOC_DataIdx dataIdx
)
/* Traverse tree & check for valid nodes; oct -> leafFile must be open;
* return 0 if ok, otherwise -1 */
{
unsigned k;
FVECT kidOrg;
const RREAL kidSize = size * 0.5;
if (!oct || !node)
return -1;
if (OOC_ISLEAF(node)) {
/* Node is a leaf; check records in each octant */
char rec [oct -> recSize]; /* Violates C89! */
OOC_OctCnt d;
RREAL *key;
for (k = 0; k < 8; k++) {
VCOPY(kidOrg, org);
OOC_OCTORIGIN(kidOrg, k, kidSize);
for (d = node -> leaf.num [k]; d; d--, dataIdx++) {
#ifdef DEBUG_OOC_CHECK
fprintf(stderr, "OOC_Check: checking record %lu\n",
(unsigned long)dataIdx
);
#endif
if (OOC_GetData(oct, dataIdx, rec)) {
fprintf(stderr, "OOC_Check: failed getting record at %lu\n",
(unsigned long)dataIdx
);
return -1;
}
key = oct -> key(rec);
if (!OOC_InBBox(oct, kidOrg, kidSize, key)) {
fprintf(stderr, "OOC_Check: key [%f, %f, %f] (zIdx %020lu) "
"outside bbox [[%f-%f], [%f-%f], [%f-%f]] "
"in octant %d (should be %d)\n",
key [0], key [1], key [2],
OOC_KEY2MORTON(key, oct),
kidOrg [0], kidOrg [0] + kidSize,
kidOrg [1], kidOrg [1] + kidSize,
kidOrg [2], kidOrg [2] + kidSize,
k, OOC_Branch(oct, org, kidSize, key, NULL)
);
/* return -1; */
}
}
}
}
else {
/* Internal node; recurse on all kids */
const OOC_Node *kid = OOC_KID1(oct, node);
OOC_DataIdx numData = 0;
if (node -> node.kid >= oct -> numNodes) {
fprintf(stderr, "OOC_Check: invalid node index %u\n",
node -> node.kid
);
return -1;
}
if (!node -> node.num) {
fputs("OOC_Check: empty octree node\n", stderr);
return -1;
}
for (k = 0; k < 8; k++)
if (OOC_ISBRANCH(node, k)) {
VCOPY(kidOrg, org);
OOC_OCTORIGIN(kidOrg, k, kidSize);
if (OOC_Check(oct, kid, kidOrg, kidSize, dataIdx))
return -1;
dataIdx += OOC_DATACNT(kid);
numData += OOC_DATACNT(kid);
kid++;
}
if (node -> node.num != numData) {
fprintf(stderr,
"Parent/kid data count mismatch; expected %u, found %u\n",
node -> node.num, numData
);
return -1;
}
}
return 0;
}
#endif
int OOC_SaveOctree (const OOC_Octree *oct, FILE *out)
/* Appends octree nodes to specified file along with metadata. Uses
* RADIANCE's portable I/O routines. Returns 0 on success, else -1. Note
* the internal representation of the nodes is platform specific as they
* contain unions, therefore we use the portable I/O routines from the
* RADIANCE library */
{
int i;
OOC_NodeIdx nc;
OOC_Node *np = NULL;
if (!oct || !oct->nodes || !oct->numData || !oct->numNodes || !out) {
fputs("OOC_SaveOctree: empty octree\n", stderr);
return -1;
}
/* Write octree origin, size, data record size, number of records, and
* number of nodes */
for (i = 0; i < 3; i++)
putflt(oct -> org [i], out);
putflt(oct -> size, out);
putint(oct -> recSize, sizeof(oct -> recSize), out);
putint(oct -> numData, sizeof(oct -> numData), out);
putint(oct -> numNodes, sizeof(oct -> numNodes), out);
/* Write nodes to file */
for (nc = oct -> numNodes, np = oct -> nodes; nc; nc--, np++) {
if (OOC_ISLEAF(np)) {
/* Write leaf marker */
putint(-1, 1, out);
/* Write leaf octant counters */
for (i = 0; i < 8; i++)
putint(np -> leaf.num [i], sizeof(np -> leaf.num [i]), out);
}
else {
/* Write node marker */
putint(0, 1, out);
/* Write node, rounding field size up to nearest number of bytes */
putint(np -> node.kid, (OOC_NODEIDX_BITS + 7) >> 3, out);
putint(np -> node.num, (OOC_DATAIDX_BITS + 7) >> 3, out);
putint(np -> node.branch, 1, out);
}
if (ferror(out)) {
fputs("OOC_SaveOctree: failed writing to node file", stderr);
return -1;
}
}
fflush(out);
return 0;
}
int OOC_LoadOctree (OOC_Octree *oct, FILE *nodeFile,
RREAL *(*key)(const void*), FILE *leafFile
)
/* Load octree nodes and metadata from nodeFile and associate with records
* in leafFile. Uses RADIANCE's portable I/O routines. Returns 0 on
* success, else -1. */
{
int i;
OOC_NodeIdx nc;
OOC_Node *np = NULL;
if (!oct || !nodeFile)
return -1;
OOC_Null(oct);
/* Read octree origin, size, record size, #records and #nodes */
for (i = 0; i < 3; i++)
oct -> org [i] = getflt(nodeFile);
oct -> size = getflt(nodeFile);
oct -> bound [0] = oct -> bound [1] = oct -> bound [2] = oct -> size;
VADD(oct -> bound, oct -> bound, oct -> org);
oct -> mortonScale = MORTON3D_MAX / oct -> size;
oct -> recSize = getint(sizeof(oct -> recSize), nodeFile);
oct -> numData = getint(sizeof(oct -> numData), nodeFile);
oct -> numNodes = getint(sizeof(oct -> numNodes), nodeFile);
oct -> key = key;
oct -> leafFile = leafFile;
if (feof(nodeFile) || !oct -> numData || !oct -> numNodes) {
fputs("OOC_LoadOctree: empty octree\n", stderr);
return -1;
}
/* Allocate octree nodes */
if (!(oct -> nodes = calloc(oct -> numNodes, sizeof(OOC_Node)))) {
fputs("OOC_LoadOctree: failed octree allocation\n", stderr);
return -1;
}
/* Read nodes from file */
for (nc = oct -> numNodes, np = oct -> nodes; nc; nc--, np++) {
OOC_CLEARNODE(np);
/* Read node type marker */
if (getint(1, nodeFile)) {
/* Read leaf octant counters and set node type */
for (i = 0; i < 8; i++)
np -> leaf.num [i] = getint(sizeof(np -> leaf.num [i]),
nodeFile
);
OOC_SETLEAF(np);
}
else {
/* Read node, rounding field size up to nearest number of bytes */
np -> node.kid = getint((OOC_NODEIDX_BITS + 7) >> 3, nodeFile);
np -> node.num = getint((OOC_DATAIDX_BITS + 7) >> 3, nodeFile);
np -> node.branch = getint(1, nodeFile);
}
if (ferror(nodeFile)) {
fputs("OOC_LoadOctree: failed reading from node file\n", stderr);
return -1;
}
}
return 0;
}
void OOC_Delete (OOC_Octree *oct)
/* Self-destruct */
{
free(oct -> nodes);
fclose(oct -> leafFile);
if (oct -> cache)
OOC_DeleteCache(oct -> cache);
}
#endif /* NIX / PMAP_OOC */
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