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Scripts_Sharing/ISFC/Utils/PlotBrainGraph_WithEdges.m
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PlotBrainGraph_WithEdges.m
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function [] = PlotBrainGraph_WithEdges(CM,CodeBook,T,v1,v2,v3,View)
N = CodeBook.full.num;
% edges
pp.doPlotConnections=1;
pp.pruneTinyConnections=0;%**
pp.pruningWeight=T ; %>> below
pp.linearWeight=0.4;%0.7; % % <- play with this to set connection tube widths
pp.gamma=1;
pp.doColourCode=true; % color code edges
pp.cmapchoiceE='jet';
% nodes
pp.doPlotDegreeSpheres=true;%**
pp.myDSplotT=90*1; % this * 1/N is the threshold
pp.showLabels=0;
pp.cmapchoiceV='gray'; % gray
pp.e_matD_to_sphS=v3;
pp.f_matD_to_sphS=0.3;
% brain outline
pp.bmesh_faceAlpha=0.1; % transparency
View = 2; % ax, sag, cor
% threshold
%dens=0.05*N*N; %wiring density
% node size and color
pp.FctForColSph=0.2*ones(size(CM,1),1);
pp.FctForSizSph=0.025*size(CM,1);
edg=sort(abs(CM(:)),'descend');
%pp.pruningWeight=edg(round(dens))/max(max(CM)); % show_cm rescales CM with max(max(CM))
figure
[~]=show_cm(CM,CodeBook.full,3,'gamma',pp.gamma,'FctForColSph',pp.FctForColSph,...
'linearWeight',pp.linearWeight,'showLabels',pp.showLabels,...
'createFigure',false,'doColourCode',pp.doColourCode,...
'cmapchoiceV',pp.cmapchoiceV,'cmapchoiceE',pp.cmapchoiceE,...
'doPlotConnections',pp.doPlotConnections,'doPlotDegreeSpheres',pp.doPlotDegreeSpheres,...
'bmesh_show',1,'bmesh_hemi','lr','bmesh_useConvexHull',false,...
'bmesh_convexHullOutlinePlanes','','FctForSizSph',pp.FctForSizSph,...
'bmesh_faceAlpha',pp.bmesh_faceAlpha,'pruneTinyConnections',pp.pruneTinyConnections,...
'pruningWeight',pp.pruningWeight,'e_matD_to_sphS',pp.e_matD_to_sphS,'f_matD_to_sphS', pp.f_matD_to_sphS,...
'plotDegreeSpheresOnlyAboveThreshold',pp.myDSplotT,...
'showTopNlabels',0,'txtPosOffset',5*[1 1 1],...%'ColAxis',[-0.5 0.5],...
'showTopNlabelsBy','vertexW','useShortNames',0);
%colorbar;
axis off
axis tight;
if View==1, az=0; el=90; cam='right'; vview='ax';
elseif View==2, az=90; el=0; cam='right'; vview='sag';
else az=0; el=0; cam='left'; vview='cor';
end
view(az,el);
camlight(cam);
disp('done');
end
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