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SecGene/GEN/etc/xsd_1.1/i2b2_gen.xsd
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i2b2_gen.xsd
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<?xml version="1.0" encoding="UTF-8"?>
<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
xmlns:gen="http://www.i2b2.org/xsd/hive/gen/"
targetNamespace="http://www.i2b2.org/xsd/hive/gen/">
<xs:element name="genomic_query_definition" type="gen:genomic_query_definitionType"/>
<xs:element name="genomic_query_result" type="gen:genomic_query_resultType"/>
<xs:element name="genomic_query_history" type="gen:genomic_query_historyType"/>
<xs:complexType name="genomic_query_definitionType">
<xs:sequence>
<xs:element name="query_name" type="xs:string"/>
<xs:element name="genomic_query_type" type="gen:genomic_query_typeType" maxOccurs="unbounded"/>
<xs:element name="patient_set" type="xs:string"/>
<xs:element name="query_info" type="gen:query_infoType" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="query_infoType">
<xs:sequence>
<xs:element name="chromosome" type="xs:string"/>
<xs:element name="gene_name" type="xs:string"/>
<xs:element name="rs_number" type="xs:string"/>
<xs:element name="position" type="xs:string"/>
<xs:element name="reference" type="xs:string"/>
<xs:element name="alternate" type="xs:string"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="genomic_query_resultType">
<xs:sequence>
<xs:element name="query_master_id" type="xs:string"/>
<xs:element name="query_name" type="xs:string"/>
<xs:element name="create_date" type="xs:dateTime"/>
<xs:element name="genomic_query_result_instance" type="gen:genomic_query_result_instanceType" minOccurs="1" maxOccurs="unbounded"/>
<xs:element name="cryptosystem_parameter" type="gen:cryptosystem_parameterType"/>
<xs:element name="partialkey_id" type="xs:string"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="genomic_query_result_instanceType">
<xs:sequence>
<xs:element name="ciphertext" type="xs:long" maxOccurs="unbounded"/>
<xs:element name="count" type="xs:long"/>
<xs:element name="denominator" type="xs:long" maxOccurs="unbounded"/>
<xs:element name="genomic_query_type" type="gen:genomic_query_typeType"/>
<xs:element name="genomic_result_info" type="gen:genomic_result_infoType" minOccurs="1" maxOccurs="unbounded"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="genomic_result_infoType">
<xs:sequence>
<xs:element name="chromosome" type="xs:string"/>
<xs:element name="gene_name" type="xs:string"/>
<xs:element name="rs_number" type="xs:string"/>
<xs:element name="position" type="xs:long"/>
<xs:element name="reference" type="xs:string"/>
<xs:element name="alternate" type="xs:string"/>
<xs:element name="encrypted_value" type="xs:long"/>
<xs:element name="encrypted_value_denominator" type="xs:long"/>
<xs:element name="degree" type="xs:int"/>
</xs:sequence>
</xs:complexType
>
<xs:simpleType name="genomic_query_typeType">
<xs:restriction base="xs:string">
<xs:enumeration value="MUTATION_COUNT"/>
<xs:enumeration value="HOMOZYGOUS_REFERENCE_COUNT"/>
<xs:enumeration value="HOMOZYGOUS_ALTERNATE_COUNT"/>
<xs:enumeration value="HETEROZYGOUS_COUNT"/>
<xs:enumeration value="REFERENCE_ALTERNATE_COUNT"/>
<xs:enumeration value="ALTERNATE_REFERENCE_COUNT"/>
<xs:enumeration value="HOMOZYGOUS_REFERENCE_FREQUENCY"/>
<xs:enumeration value="HOMOZYGOUS_ALTERNATE_FREQUENCY"/>
<xs:enumeration value="HETEROZYGOUS_FREQUENCY"/>
<xs:enumeration value="REFERENCE_ALTERNATE_FREQUENCY"/>
<xs:enumeration value="ALTERNATE_REFERENCE_FREQUENCY"/>
<xs:enumeration value="ALLELE_FREQUENCY"/>
</xs:restriction>
</xs:simpleType>
<xs:complexType name="cryptosystem_parameterType">
<xs:sequence>
<xs:element name="plaintext_modulus" type="xs:long"/>
<xs:element name="coefficient_modulus" type="xs:long"/>
<xs:element name="polynomial_degree" type="xs:int"/>
</xs:sequence>
</xs:complexType>
<xs:complexType name="genomic_query_historyType">
<xs:sequence>
<xs:element name="query_master_id" type="xs:string"/>
<xs:element name="query_name" type="xs:string"/>
<xs:element name="create_date" type="xs:dateTime"/>
</xs:sequence>
</xs:complexType>
</xs:schema>
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