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FROM centos:7.4.1708
#---------------
# Work directory
#---------------
ENV HOMEDIR=/home/bonepro
WORKDIR $HOMEDIR
#---------------
# Enable repo
#---------------
RUN yum -y install epel-release
RUN yum-config-manager --enable epel
#-------------------
# Install compilers
#-------------------
RUN yum -y install \
gcc-4.8.5-28.el7_5.1.x86_64 \
gcc-c++-4.8.5-28.el7_5.1.x86_64 \
gcc-fortran-4.8.5-28.el7_5.1.x86_64 \
cmake3-3.11.2-1.el7.x86_64 \
python-devel-2.7.5-68.el7.x86_64 \
python2-pip-8.1.2-6.el7.noarch
#----------------------------
# Install libraries and tools
#----------------------------
RUN yum -y install \
make which hg wget git doxygen bzip2 \
eigen3-3.2.5-2.el7.noarch \
eigen3-devel-3.2.5-2.el7.noarch \
openmpi-1.10.7-1.el7.x86_64 \
openmpi-devel-1.10.7-1.el7.x86_64 \
hdf5-devel-1.8.12-10.el7.x86_64 \
tkinter-2.7.5-68.el7.x86_64 \
mesa-libGL-17.2.3-8.20171019.el7.x86_64 \
mesa-libGL-devel-17.2.3-8.20171019.el7.x86_64 \
freeglut-devel-2.8.1-3.el7.x86_64 \
libXt-devel-1.1.5-3.el7.x86_64
#--------------
# Set up python
#--------------
RUN pip2.7 install numpy=='1.9.2'
RUN pip2.7 install scipy=='0.13.2'
RUN pip2.7 install matplotlib
#------------
# Set path
#------------
ENV PATH=/usr/include:/usr/lib64/openmpi/bin:$PATH
#------------
# Check
#------------
RUN gcc --version
RUN python --version
RUN mpirun --version
#================================================================
# FE solvers
#================================================================
#--------------
# ParOsol
#--------------
RUN hg clone https://bitbucket.org/cflaig/parosol
# compile parosol
RUN cd $HOMEDIR/parosol/build \
&& cmake3 \
-DCMAKE_CXX_COMPILER:FILEPATH=/usr/lib64/openmpi/bin/mpic++ \
-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo \
-DHDF5_LIBRARIES:PATH=/usr/lib64/libhdf5.so \
-DHDF5_INCLUDE_DIRS:PATH=/usr/include $HOMEDIR/parosol/src && make
RUN cd $HOMEDIR/parosol \
&& tar jxf mesh.tar.bz2
RUN cd $HOMEDIR/parosol/build \
&& mpirun -n 2 --allow-run-as-root parosol ../mesh/h5/sphere.h5
#------------------
# Calculix
#------------------
RUN yum install -y \
mesa-libGLU-9.0.0-4.el7.x86_64 \
mesa-libGLU-devel-9.0.0-4.el7.x86_64 \
libXmu-1.1.2-2.el7.x86_64 \
libXmu-devel-1.1.2-2.el7.x86_64
RUN wget http://www.dhondt.de/cgx_2.14.bz2
RUN bunzip2 cgx_2.14.bz2 \
&& chmod 755 cgx_2.14 \
&& mv cgx_2.14 /usr/local/bin/cgx
#================================================================
# Image processing tools
#================================================================
# #------------
# # Install VTK
# #------------
# RUN wget https://www.vtk.org/files/release/8.1/VTK-8.1.0.tar.gz
# RUN tar xzf VTK-8.1.0.tar.gz
# RUN mkdir $HOMEDIR/VTK-8.1.0/build
# RUN cd $HOMEDIR/VTK-8.1.0/build \
# && cmake3 \
# -DCMAKE_CXX_COMPILER=/usr/lib64/openmpi/bin/mpic++ \
# -DCMAKE_INSTALL_PREFIX:PATH=/usr/local/vtk \
# $HOMEDIR/VTK-8.1.0 \
# && make \
# && make install
# Set up python
# RUN pip2.7 install vtk
#--------------------
# Boost (for n88util)
#--------------------
# RUN wget https://dl.bintray.com/boostorg/release/1.67.0/source/boost_1_67_0.tar.gz
# RUN tar -xzf boost_1_67_0.tar.gz
# RUN cd $HOMEDIR/boost_1_67_0 \
# && ./bootstrap.sh --prefix=/usr/local/boost \
# && ./b2 install
# #--------------------
# # n88util
# #--------------------
# RUN git clone https://github.com/Numerics88/n88util.git
# RUN cd $HOMEDIR/n88util \
# && mkdir build \
# && cd $HOMEDIR/n88util/build \
# && cmake3 \
# -DCMAKE_INSTALL_PREFIX:PATH=/usr/local/n88util \
# -DBoost_INCLUDE_DIR:PATH=/usr/local/boost/include $HOMEDIR/n88util \
# && make
# #--------------------
# # AimIO
# #--------------------
# RUN git clone https://github.com/Numerics88/AimIO.git
# RUN cd $HOMEDIR/AimIO \
# && mkdir build \
# && cd $HOMEDIR/AimIO/build \
# && cmake3 \
# -DCMAKE_INSTALL_PREFIX:PATH=/usr/local/AimIO \
# -DBoost_INCLUDE_DIR:PATH=/usr/local/boost/include \
# -DBOOST_LIBRARYDIR=/usr/local/boost/lib \
# -Dn88util_DIR:PATH=$HOMEDIR/n88util/build $HOMEDIR/AimIO \
# && make
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