bonepro/99ad4867b940master
bonepro/
99ad4867b940master
README.md
README.md
BonePro
BonePro container contains environment to run tools in bone biomechanics analysis.
- CentOS7
- gcc 4.8.5
- cmake 3.6.3
- Python 2.7.5
- Numpy 1.9.2
- Scipy 0.13.2
- HDF 1.8.12
- OpenMPI 1.10.6
- VTK 8.1
- ParOsol
- n88util
- AimIO
- Calculix
Download bonepro
$ git clone git@sissource.ethz.ch:sis/bonepro.git
Build docker image
$ cd bonepro/container/ $ docker build -t boneproapp .
When you type
$ docker images -a
you should see the images list
REPOSITORY TAG IMAGE ID CREATED SIZE boneproapp latest 939078176e11 4 weeks ago 4.55GB
Run docker in bash mode
You can look into the container environment that you have built in bash mode.
$ docker run -it boneproapp /bin/bash
Run the docker conainter
Before running the command, set the correct paths to data, medtool and scripts.
$ docker run \ -v /path/to/data:/mnt/data \ -v /path/to/medtool_functions:/mnt/medtool \ -v /path/to/scripts:/mnt/scripts \ boneproapp \ python2.7 \ /mnt/scripts/AIM2FE_v5.py \ /mnt/medtool \ /mnt/data/D_FEA_PRE_179/C0002234.AIM \ 3 yes 0.3 local
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