aim2fe.py
02915adb5f9bmaster

aim2fe.py
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			"""
			This script converts an AIM file to a HDF5 file.
			Adapted from the script from Denis Schenk, ISTB, University of Bern

			Author: Jarunan Panyasantisuk, ETH Scientific IT Services
			Date: 13 November 2018
			"""
			from __future__ import print_function

			import yaml

			from bonepy import io_utils
			from bonepy import preprocessing


			def aim2fe(config, sample):
			umat_parameters = io_utils.set_umat_parameters(config)
			print(yaml.dump(umat_parameters, default_flow_style=False))

			filenames = io_utils.set_filenames(config, sample)
			print(yaml.dump(filenames, default_flow_style=False))

			bone = io_utils.read_aim(filenames)
			bone = preprocessing.adjust_image_size(bone, config)

			IMTYPE = config["imtype"]
			bone = preprocessing.calculate_bvtv(bone, IMTYPE)
			bone = preprocessing.generate_full_block_mesh(bone, filenames)
			bone = preprocessing.calculate_fabric(bone, config)
			bone = preprocessing.material_mapping(bone, config, umat_parameters, filenames)
			summary_variables = preprocessing.set_summary_variables(bone)

			io_utils.log_summary(bone, config, filenames, summary_variables)
			io_utils.update_abaqus_input_file(bone, filenames)