convertall.py
36d094b12eedmaster

convertall.py
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			import os


			def create_key(template, outtype=('nii.gz',), annotation_classes=None):
			if template is None or not template:
			raise ValueError('Template must be a valid format string')
			return template, outtype, annotation_classes


			def infotodict(seqinfo):
			"""Heuristic evaluator for determining which runs belong where

			allowed template fields - follow python string module:

			item: index within category
			subject: participant id
			seqitem: run number during scanning
			subindex: sub index within group
			"""

			data = create_key('run{item:03d}')
			info = {data: []}
			last_run = len(seqinfo)

			for s in seqinfo:
			"""
			The namedtuple `s` contains the following fields:

			* total_files_till_now
			* example_dcm_file
			* series_id
			* dcm_dir_name
			* unspecified2
			* unspecified3
			* dim1
			* dim2
			* dim3
			* dim4
			* TR
			* TE
			* protocol_name
			* is_motion_corrected
			* is_derived
			* patient_id
			* study_description
			* referring_physician_name
			* series_description
			* image_type
			"""

			info[data].append(s.series_id)
			return info