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dlma_system.hh
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Fri, Oct 18, 09:53

dlma_system.hh
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#include <system.hh>
#ifndef DLMA_SYSTEM_H
#define DLMA_SYSTEM_H
namespace simulation{
template <typename type>
class dlma_system: public system<type>{
public:
virtual std::vector<std::string> split_string_by_delimiter(const std::string& s, char delimiter);
virtual void read_params_parser(char *params_name);
virtual void initialize_system() {};
virtual void calculate_propensity();
virtual void add_aggregate(constituent<type> *new_aggregate);
virtual void remove_aggregate(const int id);
virtual constituent<type>* get_aggregate(const int id);
virtual void build_id_map();
virtual int get_latest_cluster_id();
virtual int get_latest_cluster_id_without_increment();
virtual int get_id_map(int c_id);
virtual int get_lattice();
virtual int get_dim();
virtual int get_max_attachments();
virtual int get_N();
virtual double get_phi();
virtual double get_alpha();
virtual std::vector<int> get_attachment_vector(const int i);
virtual simulation_box<type>* get_box();
virtual constituent<type>* get_constituent(const int i);
virtual void print_id_map();
virtual void print_grid() {};
virtual bool check_viability(constituent<type> *c_1, type *dr) {};
virtual void move_aggregate(const int i, type *dr) {};
virtual void add_attachment(constituent<type> *c_1);
virtual void add_attachment(const int i, const int j) {};
virtual void print_attachments();
virtual int total_aggregates();
virtual double get_seedmass();
virtual constituent<type>* get_particle_by_id(const int id);
virtual type get_interparticle_distance(constituent<type> *p_1, constituent<type> *p_2);
protected:
std::mt19937 generator;
std::uniform_real_distribution<double> dis;
system_factory<type> factory;
simulation_box<type> *box;
std::vector<constituent<type>*> all_particles;
std::vector<constituent<type>*> aggregates;
std::map<int, int> id_map;
std::vector<std::vector<int>> attachments;
double *propensity;
double *cum_propensity;
int N;
bool N_flag = false;
int N_s;
bool N_s_flag = false;
double seed_pct;
bool seed_pct_flag = false;
int D;
int D_flag = false;
int lattice;
bool lattice_flag = false;
double phi;
bool phi_flag = false;
double alpha;
bool alpha_flag = false;
double seed_mass;
bool seed_mass_flag = false;
int rng_seed = 0;
bool rng_seed_flag = false;
type *L;
type *halfL;
bool *L_flag;
bool L_flag_and;
bool L_flag_or;
int *periodic;
bool *periodic_flag;
bool periodic_flag_and;
int latest_cluster_id=0;
bool is_viable;
type temp_r;
type r2;
};
}
#endif

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