dlma_system_offlattice.hh
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dlma_system_offlattice.hh
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			#include <dlma_system.hh>
			#include <misc.hh>

			#ifndef DLMA_SYSTEM_OFFLATTICE_H
			#define DLMA_SYSTEM_OFFLATTICE_H

			namespace simulation{

			template <typename type>
			class dlma_system_offlattice: public dlma_system<type>{

			public:

			dlma_system_offlattice(char *params_name);
			~dlma_system_offlattice();
			void initialize_system();
			void move_aggregate(int i, type *dr);
			void add_attachment(const int i, const int j);
			void build_attachment_list();

			private:

			void calc_rij();
			//bool check_rij();
			std::vector<coll_deets> build_collision_list(int i, double alpha, type *dr);
			std::vector<int> available_sites_temp;
			coll_deets calc_quad_eqn(type dr, double alpha, constituent<type> ref_particle, constituent<type> *nb_particle);
			type fix_overlap(const int i, type *dr);
			void build_site_vector();
			void init_erdos_renyi();
			void build_temp_L_arrs();
			constituent<type> *image;
			std::vector<int> actual_list;
			std::vector<int> image_list;
			std::vector<int> neighbours;
			int iters = 0;
			double *rij;
			std::vector<coll_deets> bonds;
			std::vector<coll_deets> hs;
			//void index_from_array_map();
			void get_array_from_index_map(int i, int *for_pop_arr);
			int get_index_from_array_map(int* temp_pos_arr);
			int pop_counter;
			int pop_i;
			int *pop_arr;
			int *pos_pop_temp;
			int *neigh_pop_temp;
			int *pos_arr_for_particle;
			int pop_div;
			int pop_rem;
			int L_disc;
			double *delta_L_temp;
			int *L_eff_temp;
			int *nx_temp;





			};



			}

			#endif