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epiph/app/lib/collection_helpers/export.coffee
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export.coffee
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class @Export
@columnHeaders: (selection) ->
cols = []
if selection.system?
Object.keys(selection.system).forEach (entity) ->
variables = selection.system[entity]
variables.forEach (variable) ->
cols.push
title: "#{entity}.#{variable}"
if selection.questionnaires?
selection.questionnaires.forEach (questionnaire) ->
questionnaire = Questionnaires.findOne questionnaire._id
Questions.find(
questionnaireId: questionnaire._id
type: $ne: 'description'
,
sort: {index: 1}
).forEach (question) ->
#console.log question
if question.type is 'table' or question.type is 'table_polar'
if question.subquestions?
question.subquestions.forEach (subquestion) ->
if question.selectionMode is "multi"
question.choices.forEach (choice) ->
cols.push
title: "#{questionnaire.id}_#{subquestion.code}-#{choice.value}"
else #if question.selectionMode is "single"
cols.push
title: "#{questionnaire.id}_#{subquestion.code}"
else
cols.push
title: "#{question.code} missing subquestions (index: #{question.index} in questionnaire: #{questionnaire.title})"
else if question.type is 'multipleChoice'
if question.choices?
if question.selectionMode is "multi"
question.choices.forEach (choice) ->
cols.push
title: "#{questionnaire.id}_#{question.code}-#{choice.value}"
else# if question.selectionMode is "single"
cols.push
title: "#{questionnaire.id}_#{question.code}"
else
cols.push
title: "#{questionnaire.id}_#{question.code} missing subquestions (index: #{question.index} in questionnaire: #{questionnaire.title})"
else
if !question.code?
question.code = "question code missing (index: #{question.index} in questionnaire: #{questionnaire.title})"
cols.push
title: "#{questionnaire.id}_#{question.code}"
cols
@rows: (selection) ->
rows = []
selection.designs.forEach (design) ->
studyDesign = StudyDesigns.findOne design._id
#filter based on selection
visitTemplates = studyDesign.visits.filter (visit) ->
design.visitIds.indexOf(visit._id) > -1
patients = Patients.find(
_id: {$in: design.patientIds}
).forEach (patient) ->
studyDesign = StudyDesigns.findOne patient.studyDesignId
study = Studies.findOne studyDesign.studyId
mixedVisits = __getScheduledVisitsForPatientId(patient._id)
#filter based on selection
mixedVisits = mixedVisits.filter (mv) ->
id = mv.designVisitId or mv._id
design.visitIds.indexOf(id) > -1
visitTemplates.sort (a, b) ->
a.index - b.index
visitTemplates.forEach (visitTemplate) ->
visit = Visits.findOne
patientId: patient._id
designVisitId: visitTemplate._id
#we use visit in rows
if !visit?
visit = {}
#ornament visit with title
visit.title = visitTemplate.title
#sanitise date
if visit.date?
visit.date = moment(visit.date).toISOString()
#ornament visit with dates
scheduledVisit = mixedVisits.find (mv) ->
id = mv.designVisitId or mv._id
id is visitTemplate._id
if scheduledVisit? and scheduledVisit.dateScheduled?
visit.dateScheduled = moment(scheduledVisit.dateScheduled).toISOString()
rows.push
study: study
studyDesign: studyDesign
patient: patient
visitTemplate: visitTemplate
visit: visit
rows
@columns: (selection, row) ->
cols = []
empty = 'NA'
if Meteor.isClient
empty = 'only in CSV'
error = 'ERROR'
if selection.system?
Object.keys(selection.system).forEach (entity) ->
variables = selection.system[entity]
variables.forEach (variable) ->
if row[entity]?
if typeof row[entity][variable] is 'function'
val = row[entity][variable]()
else
val = row[entity][variable]
else
val = empty#"#{entity}.#{variable}"
if val?
cols.push "#{val}"
else
cols.push empty
if selection.questionnaires?
selection.questionnaires.forEach (questionnaire) ->
questionnaire = Questionnaires.findOne questionnaire._id
Questions.find(
questionnaireId: questionnaire._id
type: $ne: 'description'
,
sort: {index: 1}
).forEach (question) ->
answer = Answers.findOne
questionId: question._id
visitId: row.visit._id if row.visit?
if question.type is 'table' or question.type is 'table_polar'
if question.subquestions? and question.subquestions.length > 0
question.subquestions.forEach (subquestion) ->
if answer? and answer.value.length > 0
subanswer = answer.value.find (v) ->
v.code is subquestion.code
if question.selectionMode is "multi"
question.choices.forEach (choice) ->
if subanswer?
if subanswer.value.indexOf(choice.value) > -1
cols.push 1
else
cols.push 0
else #no subanswer for this question
cols.push empty
else #if question.selectionMode is "single"
if subanswer? and subanswer.value?
cols.push subanswer.value
else #no subanswer for this subquestion
cols.push empty
else #no answer for this question
if question.selectionMode is "multi"
question.choices.forEach (choice) ->
cols.push empty
else #if question.selectionMode is "single"
cols.push empty
else #missing subquestions
if Meteor.isServer
cols.push error
else
cols.push "#{question.code} missing subquestions (index: #{question.index} in questionnaire: #{questionnaire.title})"
else if question.type is 'multipleChoice'
if question.choices?
if question.selectionMode is "multi"
question.choices.forEach (choice) ->
if answer?
if answer.value.indexOf(choice.value) > -1
cols.push 1
else
cols.push 0
else
cols.push empty
else #if question.selectionMode is "single"
if answer?
cols.push answer.value
else
cols.push empty
else
if Meteor.isServer
cols.push error
else
cols.push "#{question.code} missing subquestions (index: #{question.index} in questionnaire: #{questionnaire.title})"
else #all other question types
if answer?
#sanitize dates to ISO-8601
if question.type is "date" or question.type is "dateTime"
value = moment(answer.value).toISOString()
cols.push value
else
cols.push answer.value
else
cols.push empty
cols
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