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Diffusion FENNECS: Finite Element Non-Neutral Electron Cloud Simulator (master) Browse

fennecs/wk/stable.sh
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stable.sh
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#!/bin/bash -l
#SBATCH --job-name=espic2d
#SBATCH --time=12:00:00
#SBATCH --hint=nomultithread
#SBATCH -c 4
#SBATCH -n 2
#srun amplxe-cl -c hotspots -r results_8 -- ../src/espic2d < stable8.in
#export I_MPI_HYDRA_BOOTSTRAP=ssh
export I_MPI_DEBUG=1000
cat >job.in << EOM
A Skeleton for MPI Time-Dependent program
=========================================
T.M. Tran SPC/EPFL
-
&BASIC
job_time=144000.0, extra_time=360.0,
nrun=100000, !# of steps
nlres=f,
femorder=3,3,
ngauss=4,4,
nlppform=.TRUE.
nlxg=f, ! Display graphical interface
nlclassical=t, ! Solve classical equations of motion
dt=8E-12, !timestep [s]
nz=128, !# of intervals in z
nnr=10,40,30 !# of intervals between radii(1) and radii(2), between radii(2) and radii(3) and between radii(3) and radii(4)
it0d=10,
it2d=100,
ittext=100,
itparts=5000,
itgraph=100,
resfile='stable_13_fine.h5'
radii=0.001,6e-3,9e-3,0.16 !radius of inner metallic wall, plasma boundaries and outer metallic wall
plasmadim=-0.10, 0.10, 0.0070, 0.0074, !zmin zmax rmin rmax of initial plasma loading
distribtype=1 ! 1: uniform RZ gaussian in V, 2: stable eq 4.85 from Davidson
lz=-0.32,0.32, !Cylinder length
nplasma=529200 !132300, ! 100000# of superparticles
npartsalloc=600000
nblock=1000,
nlPhis=t, ! Deactivate calculation of self electric field
! nplasma=100
potinn=-20000, !potential at inner wall [V]
potout=0, !30000, !potential at outer wall [V]
B0=0.21, !Davidson chapter 4 formula 4.89 [T]
Rcurv=3,!1.001, !Davidson chapter 4 formula 4.89
width=0.64,
n0=-5e13, dt=8E-13 !Initial plasma density in plasmadim
! n0=-4E16, dt=8E-12
! n0=-5.e15, dt=8E-12,
! n0=-3.e19, dt=8e-13,
! n0=-5.e8
temp=10000, !Initial temperature of plasma [K] (thermal velocity)
!H0=3.2e-14,
!P0=8.66e-25,
/
&geomparams
r_a=0.001,
r_b=0.16
nlweb=t,
walltype=0,
above1=1,
above2=-1,
/
EOM
export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
mpirun -np 2 ../../src/espic2d job.in
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