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Reader.java
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Created
Wed, Jan 8, 21:44
Size
2 KB
Mime Type
text/x-java
Expires
Fri, Jan 10, 21:44 (1 d, 23 h)
Engine
blob
Format
Raw Data
Handle
23488984
Attached To
R3229 Genome Privacy - SHCS App
Reader.java
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package
io.bim
;
import
java.awt.Color
;
import
java.io.BufferedReader
;
import
java.io.File
;
import
java.io.FileReader
;
import
java.io.IOException
;
import
java.sql.SQLException
;
import
javax.swing.JTextPane
;
import
javax.swing.text.BadLocationException
;
import
javax.swing.text.SimpleAttributeSet
;
import
javax.swing.text.StyleConstants
;
import
javax.swing.text.StyledDocument
;
import
database.DBconnector_client
;
public
class
Reader
implements
Runnable
{
private
File
input_f
;
private
BufferedReader
br
;
private
DBconnector_client
conn_mu
;
private
String
path
;
private
JTextPane
tp
;
private
StyledDocument
doc
;
public
Reader
(
String
bim_file_path
,
JTextPane
txp
){
path
=
bim_file_path
;
conn_mu
=
new
DBconnector_client
();
tp
=
txp
;
doc
=
tp
.
getStyledDocument
();
}
@Override
public
void
run
()
{
try
{
//check extension file
String
[]
pathCheck
=
path
.
split
(
"\\."
);
if
(!
pathCheck
[
pathCheck
.
length
-
1
].
equalsIgnoreCase
(
"bim"
))
{
throw
new
IOException
(
"Wrong Format for BIM File!"
);
}
SimpleAttributeSet
attribute
=
new
SimpleAttributeSet
();
StyleConstants
.
setForeground
(
attribute
,
Color
.
BLACK
);
try
{
doc
.
insertString
(
doc
.
getLength
(),
"BIM file parsing, please wait..."
+
"\n"
,
attribute
);
}
catch
(
BadLocationException
e1
)
{
e1
.
printStackTrace
();
}
input_f
=
new
File
(
path
);
br
=
new
BufferedReader
(
new
FileReader
(
input_f
));
String
newline
;
long
start
=
System
.
currentTimeMillis
();
while
((
newline
=
br
.
readLine
())
!=
null
){
String
[]
tokens
=
newline
.
split
(
"\t"
);
conn_mu
.
insertMarker
(
tokens
[
1
],
tokens
[
4
],
tokens
[
5
],
Integer
.
parseInt
(
tokens
[
3
]),
-
1
,
tokens
[
0
]);
}
long
end
=
System
.
currentTimeMillis
();
try
{
doc
.
insertString
(
doc
.
getLength
(),
"BIM file parsing completed!"
+
"\n\n"
,
attribute
);
doc
.
insertString
(
doc
.
getLength
(),
(
end
-
start
)
+
" ms\n"
,
attribute
);
}
catch
(
BadLocationException
e1
)
{
e1
.
printStackTrace
();
}
}
catch
(
IOException
|
SQLException
e
){
e
.
printStackTrace
();
SimpleAttributeSet
error
=
new
SimpleAttributeSet
();
StyleConstants
.
setForeground
(
error
,
Color
.
RED
);
try
{
doc
.
insertString
(
doc
.
getLength
(),
e
.
getMessage
()
+
"\n"
,
error
);
}
catch
(
BadLocationException
e1
)
{
// TODO Auto-generated catch block
e1
.
printStackTrace
();
}
}
}
}
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