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genopri-shcs/project/GenomicPrivacy(android)/GenomicPrivacy/src/com/example/genomicprivacy/RequestOk.java
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RequestOk.java
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package com.example.genomicprivacy;
import java.sql.SQLException;
import java.util.ArrayList;
import java.util.HashMap;
import FrameWork.DBconnector_mu;
import FrameWork.Request;
import FrameWork.RequestPatient;
import android.app.Fragment;
import android.graphics.Color;
import android.os.AsyncTask;
import android.os.Bundle;
import android.view.LayoutInflater;
import android.view.View;
import android.view.View.OnClickListener;
import android.view.ViewGroup;
import android.widget.AdapterView;
import android.widget.AdapterView.OnItemClickListener;
import android.widget.ArrayAdapter;
import android.widget.AutoCompleteTextView;
import android.widget.Button;
import android.widget.CheckBox;
import android.widget.LinearLayout;
import android.widget.TextView;
import android.widget.Toast;
/**
* @author Serrano Kevin
* @author Weber Jeremy
*
*/
public class RequestOk extends Fragment {
/**
* List of all the requests who have been accepted
*/
ArrayList<RequestPatient> okRequest = new ArrayList<RequestPatient>();
/**
* List of all the requests who have been accepted by a specific patient
*/
ArrayList<RequestPatient> requestOnePatient = new ArrayList<RequestPatient>();
/**
* Ok button for searching a patient
*/
Button ok;
/**
* Button for performing the test
*/
Button perfTest;
/**
* View for entering the patient's ID
*/
TextView idSearch;
/**
* Layout for all the request who has been accepted by the patient
*/
LinearLayout linCheckBoxOk;
/**
* Check box for the request on which the test will be perform
*/
CheckBox checkBoxOk;
/**
* List of the result
*/
double[][] results;
/**
* List of the result
*/
double[] resultsPDF;
/**
* Info of the patient
*/
String patientDisplay;
/**
* List of the test's ID
*/
int[] IDs_t;
/**
* View for display all the matches of the patient's search
*/
AutoCompleteTextView textRequestOk;
/**
* Adapter for displaying the result
*/
ArrayAdapter<String> adapterRequestOk;
int id_p;
@Override
public View onCreateView(LayoutInflater inflater, ViewGroup container,
Bundle savedInstanceState) {
// TODO Auto-generated method stub
View view = inflater.inflate(R.layout.fragment_request_ok, container,
false);
textRequestOk = (AutoCompleteTextView) view
.findViewById(R.id.autoSearchReqOk);
perfTest = (Button) view.findViewById(R.id.performTest);
linCheckBoxOk = (LinearLayout) view
.findViewById(R.id.linearCheckBoxesOkRequest);
new GetRequestPending().execute();
new getPatientName().execute(textRequestOk.getText().toString());
textRequestOk.setOnItemClickListener(new OnItemClickListener() {
@Override
public void onItemClick(AdapterView<?> arg0, View arg1, int pos,
long arg3) {
linCheckBoxOk.removeAllViews();
patientDisplay = arg0.getItemAtPosition(pos).toString();
String[] patientSelected;
patientSelected = arg0.getItemAtPosition(pos).toString()
.split(" ; ");
id_p = Integer.parseInt(patientSelected[2]);
searchID();
}
});
perfTest.setOnClickListener(new OnClickListener() {
@Override
public void onClick(View v) {
new PerformTest().execute();
}
});
return view;
}
/**
* Search the patient from his ID that have entered previously on the
* EditText
*/
private void searchID() {
for (int i = 0; i < okRequest.size(); i++) {
if (id_p == okRequest.get(i).getId_p()) {
requestOnePatient.add(okRequest.get(i));
checkBoxOk = new CheckBox(ContextApp.getContext());
checkBoxOk.setText("" + okRequest.get(i).getNameTest());
checkBoxOk.setTextColor(Color.BLACK);
linCheckBoxOk.addView(checkBoxOk);
}
}
}
/**
* Asynchrous task which send to the server for performing the test
*
* @author Serrano Kevin
* @author Weber Jeremy
*
*/
private class PerformTest extends AsyncTask<Void, Void, Void> {
@Override
protected Void doInBackground(Void... params) {
ArrayList<RequestPatient> listSelected = new ArrayList<RequestPatient>();
results = new double[linCheckBoxOk.getChildCount()][2];
resultsPDF = new double[linCheckBoxOk.getChildCount()];
IDs_t = new int[linCheckBoxOk.getChildCount()];
for (int i = 0; i < requestOnePatient.size(); i++) {
CheckBox box = (CheckBox) linCheckBoxOk.getChildAt(i);
if (box.isChecked()) {
listSelected.add(requestOnePatient.get(i));
}
}
String[] traits = new String[listSelected.size()];
String[] group = new String[listSelected.size()];
HashMap<Integer, Integer> mapIDdisToIDGroup = null;
HashMap<Integer, String> mapIDgroupToGroup = null;
HashMap<Integer, String> mapIDtoDiseases = null;
// OK pour ID T
try {
mapIDdisToIDGroup = DBconnector_mu.IDDisToIDcat();
mapIDgroupToGroup = DBconnector_mu.catIDtocatName();
mapIDtoDiseases = DBconnector_mu.IDDisToDisease();
} catch (SQLException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
for (int j = 0; j < listSelected.size(); j++) {
Request r = createRequest(listSelected.get(j));
IDs_t[j] = r.getId_t();
results[j] = ContextApp.getMu().runTest(r);
traits[j] = mapIDtoDiseases.get(r.getId_t());
group[j] = mapIDgroupToGroup.get(mapIDdisToIDGroup.get(r
.getId_t()));
System.out.println("RESULTAT" + results[j][1]);
resultsPDF[j] = results[j][0];
}
ContextApp.getMu().createReport(resultsPDF, traits, group, IDs_t);
for (int i = 0; i < results.length; i++) {
if (IDs_t[i] == 12) {
ContextApp.setResult12(results[i][1]);
}
}
return null;
}
@Override
protected void onPostExecute(Void result) {
// TODO Auto-generated method stub
super.onPostExecute(result);
Toast toast = Toast.makeText(ContextApp.getContext(),
"Your PDF was created in GenomicPrivacy/PDFReports", 7000);
toast.show();
}
}
/**
* Asynchronous task which download all the pending's requests
*
* @author Serrano Kevin
* @author Weber Jeremy
*
*/
private class GetRequestPending extends
AsyncTask<Void, Void, ArrayList<RequestPatient>> {
ArrayList<RequestPatient> allRequest = new ArrayList<RequestPatient>();
@Override
protected ArrayList<RequestPatient> doInBackground(Void... params) {
// TODO Auto-generated method stub
allRequest = ContextApp.getMu().checkNewRequest();
for (int i = 0; i < allRequest.size(); i++) {
if (allRequest.get(i).getFlag() == 1) {
okRequest.add(allRequest.get(i));
}
}
return okRequest;
}
}
/**
* Create a request from a requestPatient
*
* @param request
* patient
* @return Request object
*/
public Request createRequest(RequestPatient rp) { // Request from
// RequestPatient
Request r = null;
try {
r = new Request(rp.getId_r(), rp.getId_p(), rp.getId_mu(),
rp.getId_t(), DBconnector_mu.getMarkers(rp.getId_t()),
DBconnector_mu.getCFs(rp.getId_t()));
} catch (SQLException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
return r;
}
/**
* Asynchronous task to retrieve the patients from what the user entered in
* the search box
*
* @author Serrano Kevin
* @author Weber Jeremy
*
*/
public class getPatientName extends
AsyncTask<String, Void, ArrayList<String>> {
protected ArrayList<String> doInBackground(String... letter) {
// TODO Auto-generated method stub
ArrayList<String> patientArray = DBconnector_mu
.getPatientsName(letter[0]);
return patientArray;
}
@Override
protected void onPostExecute(ArrayList<String> result) {
// TODO Auto-generated method stub
super.onPostExecute(result);
adapterRequestOk = new ArrayAdapter<String>(
ContextApp.getContext(), R.layout.listitem, result);
textRequestOk.setThreshold(1);
textRequestOk.setAdapter(adapterRequestOk);
}
}
}
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