Homec4science
Diffusion Genome Privacy - SHCS App (master) Browse

genopri-shcs/project/PPPClientMobile/src/ch/epfl/pharma/framework/Interpreter.java
4474a01cc319master

Last Change
Raw File

Interpreter.java
View Options

/*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package ch.epfl.pharma.framework;
/**
* The Class Interpreter.
*
* @author raisaro
*/
public class Interpreter {
/**
* Instantiates a new interpreter.
*/
public Interpreter(){
}
/**
* Run interpretation.
*
* @param ID_t the i d_t
* @param result the result
* @return the string
*/
public String[] runInterpretation(int ID_t, double result){
String output = null;
String category = null;
switch(ID_t){
case 1:
if(result == 2 ){
output = "Two copies of CCR5-delta32, protected against R5 virus";
category = "0";
}
else if(result == 1){
output = "One copy of CCR5-delta32";
category = "0";
}
else{
output = "No protective alleles found";
category = "1";
}
break;
case 2:
if(result >= 2){
output = "Predicted to have low HIV setpoint viral load/slow progression off therapy";
category = "0";
}
else{
output = "No protective alleles found";
category = "1";
}
break;
case 3:
if(result >= 1){
output = "ABC hypersensitivity! HLA-B*57 present";
category = "2";
}
else{
category = "1";
output = "No risk alleles found";
}
break;
case 4:
if(result == 2){
output = "Predisposed to hyperbilirubinemia";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
case 5:
if(result == 2){
output = "High likelihood of spontaneous clearance";
category = "2";
}
else if (result == 1){
output = "Slightly increased chance of spontaneous clearance";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
case 6:
if(result == 2){
category = "2";
output = "High likelihood of response to interferon";
}
else if (result == 1){
output = "Slightly increased chance of response to interferon";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
case 7:
if(result >= 1){
output = "Protected against anaemia on Ribavirin";
category = "0";
}
else{
output = "No protective alleles found";
category = "1";
}
break;
case 8:
if(result == 21){
output = "Predisposed to high plasma levels and treatment discontinuation";
category = "2";
}
else if(result >= 2 && result < 21){
output = "Predisposed to high plasma levels";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
case 9:
if(result >= 2){
output = "Predisposed to high plasma levels";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
case 10:
if(result >= 1){
output = "Predisposed to high plasma levels";
category = "2";
}
else {
output = "No risk alleles found";
category = "1";
}
break;
case 11:
if(result == -2){
output = "Predisposed to low plasma levels";
category = "2";
}
else if(result >= 2){
output = "Predisposed to high plasma levels";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
case 12:
if(result >= 2.74d){
output = "Increased genetic risk of CAD";
category = "2";
}
else {
output = "No risk alleles found";
category = "1";
}
break;
case 13:
if(result >= 1){
output = "Predisposed to high non-HDL cholesterol";
category = "2";
}
else {
output = "No risk alleles found";
category = "1";
}
break;
case 14:
if(result >= 2){
output = "Predisposed to low HDL cholesterol";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
case 15:
if(result >= 1){
output = "Predisposed to high triglyceride levels";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
case 16:
if(result >= 6){
output = "Increased risk of type 2 diabetes";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
case 17:
if(result > 1){
output = "Predisposed to Vitamin D deficiency";
category = "2";
}
else{
output = "No risk alleles found";
category = "1";
}
break;
}
return new String[]{output, category};
}
}
c4science · Help