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youssef-genomic.tex
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youssef-genomic.tex
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%\documentclass[11pt]{./layouts/report}
\documentclass[11pt,twoside,a4paper]{report}
\setcounter{secnumdepth}{3}
% include graphics
\usepackage[pdftex]{graphicx}
\usepackage{float}
\usepackage{amssymb}
\usepackage{dsfont}
\usepackage[top=1.5cm, bottom=1.5cm, left=2cm, right=2cm]{geometry}
\usepackage{mathtools}
\usepackage{caption}
%\usepackage{subcaption}
\usepackage{subfig}
\usepackage{epstopdf}
\usepackage{eurosym}
% use math packages
\usepackage{amsmath,amsfonts,amsthm} % Math packages
\usepackage{algorithm}
\usepackage{algorithmic}
\newcommand{\byte}[0]{\text{[B]}}
% TODOs package
\usepackage{todonotes}
\usepackage{lipsum}
\setlipsumdefault{1}
% After matter packages
\usepackage{appendix}
\usepackage[backend=bibtex, urldate=iso8601]{biblatex}
\bibliography{biblio/research}
\newcommand{\citep}[1]{\cite{#1}}
%\setlength{\parindent}{0in}
% Drawing diagrams
\usepackage{tikz}
\usepackage{pgf-umlsd}
% Drawing UML
\usepackage[T1]{fontenc}
\usepackage{external_sty/tikz-uml}
\newcommand{\stereotype}[1]{
\guillemotleft#1\guillemotright
}
\newcommand{\umlattrib}[2]{
#1 : #2
}
\newcommand{\umlattribstereo}[3]{
\stereotype{#3} \umlattrib{#1}{#2}
}
% Reference
\usepackage[hidelinks]{hyperref}
\newcommand{\refappendix}[1]{
Appendix ~\ref{#1} \nameref{#1}
}
\newcommand{\refsec}[1]{
Section ~\ref{#1} \nameref{#1}
}
\newcommand{\refchap}[1]{
Chapter ~\ref{#1} \nameref{#1}
}
\newcommand{\refalgo}[1]{
Algorithm ~\ref{#1}
}
\newcommand{\reffig}[1]{
Figure ~\ref{#1}
}
\newcommand{\reftab}[1]{
Table ~\ref{#1}
}
% source code environment
\usepackage{listings}
\lstset{basicstyle=\ttfamily,breaklines=true}
\begin{document}
%%%%%%%%%%%%%%%%%%%%
% Front Matter
%%%%%%%%%%%%%%%%%%%%
% Title Page
\input{./title/youssef-genomic_title.tex}
% Table of Contents
\setcounter{tocdepth}{3}
\tableofcontents
\clearpage
% Tables of Illustrations
\begingroup
\let\cleardoublepage\relax
\let\clearpage\relax
% List of Figures
\listoffigures
% List of Tables
\listoftables
% List of Algorithms
\listofalgorithms
\endgroup
%%%%%%%%%%%%%%%%%%%%
% Main Matter
%%%%%%%%%%%%%%%%%%%%
% Introduction
\input{sections/intro.tex}
% Genomic Background
%\input{sections/genomic_background.tex}
% Cryptographic Background
\input{sections/crypto_background.tex}
% Implementation of ECCEG
\input{sections/ecceg_impl.tex}
% Performance and Monatory Analysis of ECCEG Solution
\input{sections/performance_analysis.tex}
% Deployment into Production Environment
\input{sections/deployment.tex}
% Conclusion and Next Steps
\input{sections/conclusion.tex}
%%%%%%%%%%%%%%%%%%%%
% Back Matter
%%%%%%%%%%%%%%%%%%%%
\input{sections/appendix.tex}
\printbibliography
%\bibliographystyle{plain}
\end{document}

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