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<title>Patient</title>
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<h2 title="Class Patient" class="title">Class Patient</h2>
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<ul class="inheritance">
<li>java.lang.Object</li>
<li>
<ul class="inheritance">
<li><a href="../FrameWork/User.html" title="class in FrameWork">FrameWork.User</a></li>
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<ul class="inheritance">
<li>FrameWork.Patient</li>
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<pre>public class <span class="strong">Patient</span>
extends <a href="../FrameWork/User.html" title="class in FrameWork">User</a></pre>
<div class="block">The Class Patient. This class contains all the functions needed by a patient</div>
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<h3>Field Summary</h3>
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<caption><span>Fields</span><span class="tabEnd">&nbsp;</span></caption>
<tr>
<th class="colFirst" scope="col">Modifier and Type</th>
<th class="colLast" scope="col">Field and Description</th>
</tr>
<tr class="altColor">
<td class="colFirst"><code>private java.lang.String</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#birth">birth</a></strong></code>
<div class="block">The birth.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>private java.lang.String[]</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#clinicalFactors">clinicalFactors</a></strong></code>
<div class="block">The clinical factors.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>private java.lang.String</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#firstName">firstName</a></strong></code>
<div class="block">The first name.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#id">id</a></strong></code>
<div class="block">The id.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>private com.cedarsoftware.util.io.JsonReader</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#jsr">jsr</a></strong></code>
<div class="block">The json reader.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>private com.cedarsoftware.util.io.JsonWriter</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#jsw">jsw</a></strong></code>
<div class="block">The json writer.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>private java.lang.String</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#name">name</a></strong></code>
<div class="block">The name.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>private <a href="../FrameWork/User.html" title="class in FrameWork">User</a></code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#u">u</a></strong></code>
<div class="block">The user.</div>
</td>
</tr>
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<td class="colFirst"><code>private java.lang.String</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#vcf">vcf</a></strong></code>
<div class="block">The markers.</div>
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<td class="colOne"><code><strong><a href="../FrameWork/Patient.html#Patient(int, java.lang.String, com.cedarsoftware.util.io.JsonReader, com.cedarsoftware.util.io.JsonWriter, java.lang.String, java.lang.String, java.lang.String, java.lang.String[])">Patient</a></strong>(int&nbsp;id,
java.lang.String&nbsp;name,
com.cedarsoftware.util.io.JsonReader&nbsp;jsr,
com.cedarsoftware.util.io.JsonWriter&nbsp;jsw,
java.lang.String&nbsp;firstName,
java.lang.String&nbsp;birth,
java.lang.String&nbsp;vcf,
java.lang.String[]&nbsp;clinicalFactors)</code>
<div class="block">Instantiates a new patient.</div>
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<th class="colFirst" scope="col">Modifier and Type</th>
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<td class="colFirst"><code><a href="../FrameWork/ClinicalFactorsTable.html" title="class in FrameWork">ClinicalFactorsTable</a></code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#checkClinicalFactors(FrameWork.RequestPatient)">checkClinicalFactors</a></strong>(<a href="../FrameWork/RequestPatient.html" title="class in FrameWork">RequestPatient</a>&nbsp;rp)</code>
<div class="block">Check clinical factors.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code><a href="../FrameWork/ClinicalFactorsTable.html" title="class in FrameWork">ClinicalFactorsTable</a></code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#fulfillClinicalFactors(FrameWork.ClinicalFactorsTable)">fulfillClinicalFactors</a></strong>(<a href="../FrameWork/ClinicalFactorsTable.html" title="class in FrameWork">ClinicalFactorsTable</a>&nbsp;cft)</code>
<div class="block">Fulfill clinical factors.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>java.lang.String</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#getBirth()">getBirth</a></strong>()</code>
<div class="block">Gets the birth.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>java.lang.String[]</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#getClinicalFactors()">getClinicalFactors</a></strong>()</code>
<div class="block">Gets the clinical factors.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>java.lang.String</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#getFirstName()">getFirstName</a></strong>()</code>
<div class="block">Gets the first name.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>java.lang.String</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#getVcf()">getVcf</a></strong>()</code>
<div class="block">Gets the markers.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>java.math.BigInteger[]</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#loadKeys()">loadKeys</a></strong>()</code>
<div class="block">Load keys from the file</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>void</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#sendConsent(FrameWork.RequestPatient, boolean, java.util.ArrayList[])">sendConsent</a></strong>(<a href="../FrameWork/RequestPatient.html" title="class in FrameWork">RequestPatient</a>&nbsp;rp,
boolean&nbsp;consent,
java.util.ArrayList[]&nbsp;cfs)</code>
<div class="block">Send consent.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>void</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#setBirth(java.lang.String)">setBirth</a></strong>(java.lang.String&nbsp;birth)</code>
<div class="block">Sets the birth.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>void</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#setClinicalFactors(java.lang.String[])">setClinicalFactors</a></strong>(java.lang.String[]&nbsp;clinicalFactors)</code>
<div class="block">Sets the clinical factors.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>void</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#setFirstName(java.lang.String)">setFirstName</a></strong>(java.lang.String&nbsp;firstName)</code>
<div class="block">Sets the first name.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>void</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#setVcf(java.lang.String)">setVcf</a></strong>(java.lang.String&nbsp;vcf)</code>
<div class="block">Sets the vcf.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>java.util.ArrayList[]</code></td>
<td class="colLast"><code><strong><a href="../FrameWork/Patient.html#updateCF(java.util.ArrayList[])">updateCF</a></strong>(java.util.ArrayList[]&nbsp;cf)</code>
<div class="block">Update clinical factors, i.e if the patient has modified the values before sending the consent.</div>
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<h3>Methods inherited from class&nbsp;FrameWork.<a href="../FrameWork/User.html" title="class in FrameWork">User</a></h3>
<code><a href="../FrameWork/User.html#checkNewRequest()">checkNewRequest</a>, <a href="../FrameWork/User.html#connexionToMU()">connexionToMU</a>, <a href="../FrameWork/User.html#connexionToSPU()">connexionToSPU</a>, <a href="../FrameWork/User.html#getID()">getID</a>, <a href="../FrameWork/User.html#getJsrSPU()">getJsrSPU</a>, <a href="../FrameWork/User.html#getJswSPU()">getJswSPU</a>, <a href="../FrameWork/User.html#getName()">getName</a>, <a href="../FrameWork/User.html#receiveFromSPU()">receiveFromSPU</a>, <a href="../FrameWork/User.html#sendToSPU(org.json.JSONObject)">sendToSPU</a>, <a href="../FrameWork/User.html#sentToMU(org.json.JSONObject)">sentToMU</a>, <a href="../FrameWork/User.html#setID(java.lang.String)">setID</a>, <a href="../FrameWork/User.html#setName(java.lang.String)">setName</a></code></li>
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<h3>Methods inherited from class&nbsp;java.lang.Object</h3>
<code>clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
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<h3>Field Detail</h3>
<a name="name">
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<h4>name</h4>
<pre>private&nbsp;java.lang.String name</pre>
<div class="block">The name.</div>
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<a name="firstName">
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<h4>firstName</h4>
<pre>private&nbsp;java.lang.String firstName</pre>
<div class="block">The first name.</div>
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<a name="birth">
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<h4>birth</h4>
<pre>private&nbsp;java.lang.String birth</pre>
<div class="block">The birth.</div>
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<h4>vcf</h4>
<pre>private&nbsp;java.lang.String vcf</pre>
<div class="block">The markers.</div>
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<pre>private&nbsp;com.cedarsoftware.util.io.JsonReader jsr</pre>
<div class="block">The json reader.</div>
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<h4>jsw</h4>
<pre>private&nbsp;com.cedarsoftware.util.io.JsonWriter jsw</pre>
<div class="block">The json writer.</div>
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<h4>clinicalFactors</h4>
<pre>private&nbsp;java.lang.String[] clinicalFactors</pre>
<div class="block">The clinical factors.</div>
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<h4>u</h4>
<pre>private&nbsp;<a href="../FrameWork/User.html" title="class in FrameWork">User</a> u</pre>
<div class="block">The user.</div>
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<a name="id">
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<h4>id</h4>
<pre>private&nbsp;int id</pre>
<div class="block">The id.</div>
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<h3>Constructor Detail</h3>
<a name="Patient(int, java.lang.String, com.cedarsoftware.util.io.JsonReader, com.cedarsoftware.util.io.JsonWriter, java.lang.String, java.lang.String, java.lang.String, java.lang.String[])">
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<h4>Patient</h4>
<pre>public&nbsp;Patient(int&nbsp;id,
java.lang.String&nbsp;name,
com.cedarsoftware.util.io.JsonReader&nbsp;jsr,
com.cedarsoftware.util.io.JsonWriter&nbsp;jsw,
java.lang.String&nbsp;firstName,
java.lang.String&nbsp;birth,
java.lang.String&nbsp;vcf,
java.lang.String[]&nbsp;clinicalFactors)</pre>
<div class="block">Instantiates a new patient.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>id</code> - the id</dd><dd><code>name</code> - the name</dd><dd><code>jsr</code> - the json reader</dd><dd><code>jsw</code> - the json writer</dd><dd><code>firstName</code> - the first name</dd><dd><code>birth</code> - the birth</dd><dd><code>vcf</code> - the markers</dd><dd><code>clinicalFactors</code> - the clinical factors</dd></dl>
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<a name="checkClinicalFactors(FrameWork.RequestPatient)">
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<h4>checkClinicalFactors</h4>
<pre>public&nbsp;<a href="../FrameWork/ClinicalFactorsTable.html" title="class in FrameWork">ClinicalFactorsTable</a>&nbsp;checkClinicalFactors(<a href="../FrameWork/RequestPatient.html" title="class in FrameWork">RequestPatient</a>&nbsp;rp)</pre>
<div class="block">Check clinical factors. this method is supposed to be called from the GUI
check which CF correspond to the disease into the request rp and return
the result into a array of string</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>rp</code> - the requestPatient</dd>
<dt><span class="strong">Returns:</span></dt><dd>the clinical factors table</dd></dl>
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<a name="sendConsent(FrameWork.RequestPatient, boolean, java.util.ArrayList[])">
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<h4>sendConsent</h4>
<pre>public&nbsp;void&nbsp;sendConsent(<a href="../FrameWork/RequestPatient.html" title="class in FrameWork">RequestPatient</a>&nbsp;rp,
boolean&nbsp;consent,
java.util.ArrayList[]&nbsp;cfs)</pre>
<div class="block">Send consent. Send the consent for a particular request, and the
encrypted clinical factors values if needed</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>rp</code> - the request patient</dd><dd><code>consent</code> - the consent</dd><dd><code>cfs</code> - the clinical factors</dd></dl>
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<h4>getFirstName</h4>
<pre>public&nbsp;java.lang.String&nbsp;getFirstName()</pre>
<div class="block">Gets the first name.</div>
<dl><dt><span class="strong">Returns:</span></dt><dd>the first name</dd></dl>
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<h4>setFirstName</h4>
<pre>public&nbsp;void&nbsp;setFirstName(java.lang.String&nbsp;firstName)</pre>
<div class="block">Sets the first name.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>firstName</code> - the new first name</dd></dl>
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<a name="getBirth()">
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<h4>getBirth</h4>
<pre>public&nbsp;java.lang.String&nbsp;getBirth()</pre>
<div class="block">Gets the birth.</div>
<dl><dt><span class="strong">Returns:</span></dt><dd>the birth</dd></dl>
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<h4>setBirth</h4>
<pre>public&nbsp;void&nbsp;setBirth(java.lang.String&nbsp;birth)</pre>
<div class="block">Sets the birth.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>birth</code> - the new birth</dd></dl>
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<h4>getVcf</h4>
<pre>public&nbsp;java.lang.String&nbsp;getVcf()</pre>
<div class="block">Gets the markers.</div>
<dl><dt><span class="strong">Returns:</span></dt><dd>the markers</dd></dl>
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<h4>setVcf</h4>
<pre>public&nbsp;void&nbsp;setVcf(java.lang.String&nbsp;vcf)</pre>
<div class="block">Sets the vcf.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>vcf</code> - the new vcf</dd></dl>
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<h4>getClinicalFactors</h4>
<pre>public&nbsp;java.lang.String[]&nbsp;getClinicalFactors()</pre>
<div class="block">Gets the clinical factors.</div>
<dl><dt><span class="strong">Returns:</span></dt><dd>the clinical factors</dd></dl>
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<h4>setClinicalFactors</h4>
<pre>public&nbsp;void&nbsp;setClinicalFactors(java.lang.String[]&nbsp;clinicalFactors)</pre>
<div class="block">Sets the clinical factors.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>clinicalFactors</code> - the new clinical factors</dd></dl>
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<a name="fulfillClinicalFactors(FrameWork.ClinicalFactorsTable)">
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<h4>fulfillClinicalFactors</h4>
<pre>public&nbsp;<a href="../FrameWork/ClinicalFactorsTable.html" title="class in FrameWork">ClinicalFactorsTable</a>&nbsp;fulfillClinicalFactors(<a href="../FrameWork/ClinicalFactorsTable.html" title="class in FrameWork">ClinicalFactorsTable</a>&nbsp;cft)</pre>
<div class="block">Fulfill clinical factors. Given a clinical factors table (all values =
false), this function will check on the server the previous values and
fulfill the table with the correct values. This take time because values
are encrypted</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>cft</code> - the clinical factors table</dd>
<dt><span class="strong">Returns:</span></dt><dd>the updated clinical factors table</dd></dl>
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<h4>loadKeys</h4>
<pre>public&nbsp;java.math.BigInteger[]&nbsp;loadKeys()</pre>
<div class="block">Load keys from the file</div>
<dl><dt><span class="strong">Returns:</span></dt><dd>the big integer[]</dd></dl>
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<h4>updateCF</h4>
<pre>public&nbsp;java.util.ArrayList[]&nbsp;updateCF(java.util.ArrayList[]&nbsp;cf)</pre>
<div class="block">Update clinical factors, i.e if the patient has modified the values before sending the consent.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>cf</code> - the clinical factors</dd>
<dt><span class="strong">Returns:</span></dt><dd>the array list[] of updated clinical factors</dd></dl>
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