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Wed, Aug 14, 15:32

setup.py
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""" Simple Kinetic Models in Python
.. moduleauthor:: SKiMPy team
"""
from setuptools import setup, find_packages
from distutils.extension import Extension
from Cython.Build import cythonize
from Cython.Distutils import build_ext
version_tag = '0.0.1'
extensions = [
Extension("skimpy.nullspace",
sources=["skimpy/cython/nullspace.pyx"],
library_dirs=['/usr/lib'],
extra_compile_args=[],
extra_link_args=['-lgmp','-lflint'],
include_dirs=[],
language = 'c',
libraries=['/usr/local/lib/libgmp.so.23',
'/usr/local/lib/libflint.so.13'],
)
,]
setup(name='Renaissance',
version=version_tag,
author='SKiMPy team + S.Choudhury',
author_email='softwares.lcsb@epfl.ch',
url='https://github.com/EPFL-LCSB/renaissance/',
download_url='https://github.com/EPFL-LCSB/skimpy/archive/'+version_tag+'.tar.gz',
install_requires=['sympy',
'pytest',
'scipy',
'numpy',
'pandas',
'bokeh',
'Cython',
'scikits.odes==2.6.3',
'deap',
'dill',
'h5py',
'escher',
'matplotlib',
],
packages = find_packages(),
python_requires='>=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, <4',
description='SKiMPy + Renaissance',
keywords=['skimpy','kinetic','models'],
extras_require={ 'ORACLE': ["pytfa"], },
#ext_modules=cythonize(extensions ),
ext_modules=extensions,
cmdclass={'build_ext': build_ext},
license='Apache2',
# See https://PyPI.python.org/PyPI?%3Aaction=list_classifiers
classifiers=[
# How mature is this project? Common values are
# 3 - Alpha
# 4 - Beta
# 5 - Production/Stable
'Development Status :: 3 - Alpha',
# Indicate who your project is intended for
'Intended Audience :: Science/Research',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Scientific/Engineering :: Chemistry'
'Environment :: Console',
# Pick your license as you wish (should match "license" above)
'License :: OSI Approved :: Apache Software License',
# Specify the Python versions you support here. In particular, ensure
# that you indicate whether you support Python 2, Python 3 or both.
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3.6',
],
)

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