write_sbash_marconi.m
e12f52de11eb2D

write_sbash_marconi.m
View Options

			% Write the input script "fort.90" with desired parameters
			INPUT = 'setup_and_run.sh';
			fid = fopen(INPUT,'wt');

			fprintf(fid,[...
			'#!/bin/bash\n',...
			'mkdir -p $CINECA_SCRATCH/HeLaZ/wk\n',...
			...
			'cd $CINECA_SCRATCH/HeLaZ/wk/\n',...
			...
			'mkdir -p ', BASIC.RESDIR,'\n',...
			'cd ',BASIC.RESDIR,'\n',...
			'cp $HOME/HeLaZ/wk/fort.90 .\n',...
			'cp $HOME/HeLaZ/wk/batch_script.sh .\n',...
			...
			'sbatch batch_script.sh\n',...
			'echo tail -f $CINECA_SCRATCH/HeLaZ/results/',BASIC.SIMID,'/',BASIC.PARAMS,'/out.txt']);

			fclose(fid);
			system(['cp setup_and_run.sh ',BASIC.RESDIR,'/.']);

			% Write the sbatch script
			INPUT = 'batch_script.sh';
			fid = fopen(INPUT,'wt');

			fprintf(fid,[...
			'#!/bin/bash\n',...
			'#SBATCH --job-name=',CLUSTER.JNAME,'\n',...
			'#SBATCH --time=', CLUSTER.TIME,'\n',...
			'#SBATCH --nodes=', CLUSTER.NODES,'\n',...
			'#SBATCH --cpus-per-task=', CLUSTER.CPUPT,'\n',...
			'#SBATCH --ntasks-per-node=', CLUSTER.NTPN,'\n',...
			'#SBATCH --mem=', CLUSTER.MEM,'\n',...
			'#SBATCH --error=err.txt\n',...
			'#SBATCH --output=out.txt\n',...
			'#SBATCH --account=FUA35_TSVVT421\n',...
			'#SBATCH --partition=skl_fua_',CLUSTER.PART,'\n',...
			'module load intel\n',...
			'module load intelmpi\n',...
			'module load autoload hdf5/1.10.4--intelmpi--2018--binary\n',...
			'module load fftw\n',...
			'srun --cpu-bind=cores ./../../../bin/helaz ',num2str(NP_P),' ',num2str(NP_KR)]);

			fclose(fid);
			system(['cp batch_script.sh ',BASIC.RESDIR,'/.']);

			system('scp {fort.90,setup_and_run.sh,batch_script.sh} ahoffman@login.marconi.cineca.it:/marconi/home/userexternal/ahoffman/HeLaZ/wk');