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gyacomo/matlab/plot/plot_radial_transport_and_spacetime.m
5e48668823b53D_parallel

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plot_radial_transport_and_spacetime.m
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function [FIGURE] = plot_radial_transport_and_spacetime(DATA, TAVG_0, TAVG_1,stfname,Nmvm, COMPZ)
%Compute steady radial transport
tend = TAVG_1; tstart = TAVG_0;
[~,its0D] = min(abs(DATA.Ts0D-tstart));
[~,ite0D] = min(abs(DATA.Ts0D-tend));
SCALE = DATA.scale;%(1/DATA.Nx/DATA.Ny)^2;
Gx_infty_avg = mean(DATA.PGAMMA_RI(its0D:ite0D))*SCALE;
Gx_infty_std = std (DATA.PGAMMA_RI(its0D:ite0D))*SCALE;
Qx_infty_avg = mean(DATA.HFLUX_X(its0D:ite0D))*SCALE;
Qx_infty_std = std (DATA.HFLUX_X(its0D:ite0D))*SCALE;
[~,ikzf] = max(squeeze(mean(abs(squeeze(DATA.PHI(:,1,1,:))),2)));
Ns3D = numel(DATA.Ts3D);
[KY, KX] = meshgrid(DATA.ky, DATA.kx);
z = DATA.z;
%% computations
% Compute Gamma from ifft matlab
Gx = zeros(DATA.Nx,DATA.Ny,numel(DATA.Ts3D));
for it = 1:numel(DATA.Ts3D)
for iz = 1:DATA.Nz
Gx(:,:,it) = Gx(:,:,it) + ifourier_GENE(-1i*KY.*(DATA.PHI(:,:,iz,it)))...
.*ifourier_GENE(DATA.DENS_I(:,:,iz,it));
end
Gx(:,:,it) = Gx(:,:,it)/DATA.Nz;
end
Gx_t_mtlb = squeeze(mean(mean(Gx,1),2));
% Compute Heat flux from ifft matlab
Qx = zeros(DATA.Nx,DATA.Ny,numel(DATA.Ts3D));
for it = 1:numel(DATA.Ts3D)
for iz = 1:DATA.Nz
Qx(:,:,it) = Qx(:,:,it) + ifourier_GENE(-1i*KY.*(DATA.PHI(:,:,iz,it)))...
.*ifourier_GENE(DATA.TEMP_I(:,:,iz,it));
end
Qx(:,:,it) = Qx(:,:,it)/DATA.Nz;
end
Qx_t_mtlb = squeeze(mean(mean(Qx,1),2));
% zonal vs nonzonal energies for phi(t)
E_Zmode_SK = zeros(1,Ns3D);
E_NZmode_SK = zeros(1,Ns3D);
for it = 1:numel(DATA.Ts3D)
E_Zmode_SK(it) = squeeze(DATA.ky(ikzf).^2.*abs(DATA.PHI(ikzf,1,1,it))^2);
E_NZmode_SK(it) = squeeze(sum(sum(((1+KX.^2+KY.^2).*abs(DATA.PHI(:,:,1,it)).^2.*(KY~=0)))));
end
[~,its3D] = min(abs(DATA.Ts3D-tstart));
[~,ite3D] = min(abs(DATA.Ts3D-tend));
%% Figure
mvm = @(x) movmean(x,Nmvm);
FIGURE.fig = figure; FIGURE.FIGNAME = ['ZF_transport_drphi','_',DATA.PARAMS]; set(gcf, 'Position', [100, 100, 1000, 600])
subplot(311)
yyaxis left
plot(mvm(DATA.Ts0D),mvm(DATA.PGAMMA_RI*SCALE),'DisplayName','$\langle n_i \partial_y\phi \rangle_y$'); hold on;
plot(mvm(DATA.Ts3D),mvm(Gx_t_mtlb),'DisplayName','matlab comp.'); hold on;
plot(DATA.Ts0D(its0D:ite0D),ones(ite0D-its0D+1,1)*Gx_infty_avg, '-k',...
'DisplayName',['$\Gamma^{\infty} = $',num2str(Gx_infty_avg),'$\pm$',num2str(Gx_infty_std)]);
ylabel('$\Gamma_x$')
ylim([0,5*abs(Gx_infty_avg)]); xlim([DATA.Ts0D(1),DATA.Ts0D(end)]);
yyaxis right
plot(mvm(DATA.Ts0D),mvm(DATA.HFLUX_X*SCALE),'DisplayName','$\langle n_i \partial_y\phi \rangle_y$'); hold on;
plot(mvm(DATA.Ts3D),mvm(Qx_t_mtlb),'DisplayName','matlab comp.'); hold on;
plot(DATA.Ts0D(its0D:ite0D),ones(ite0D-its0D+1,1)*Qx_infty_avg, '-k',...
'DisplayName',['$Q_x^{\infty} = $',num2str(Qx_infty_avg),'$\pm$',num2str(Qx_infty_std)]);
ylabel('$Q_x$')
ylim([0,5*abs(Qx_infty_avg)]); xlim([DATA.Ts0D(1),DATA.Ts0D(end)]);
grid on; set(gca,'xticklabel',[]);
title({DATA.param_title,...
['$\Gamma^{\infty} = $',num2str(Gx_infty_avg),'$, Q^{\infty} = $',num2str(Qx_infty_avg)]});
%% radial shear radial profile
% computation
Ns3D = numel(DATA.Ts3D);
[KY, KX] = meshgrid(DATA.ky, DATA.kx);
plt = @(x) mean(x(:,:,1,:),2);
kycut = max(DATA.ky);
kxcut = max(DATA.kx);
LP = (abs(KY)<kycut).*(abs(KX)<kxcut); %Low pass filter
switch COMPZ
case 'avg'
compz = @(f) mean(f,3);
nameL = '$\langle$ ';
nameR = ' $\rangle_{z}$';
otherwise
compz = @(f) f(:,:,COMPZ);
nameL = '';
nameR = [' $(z=',num2str(z(COMPZ)),')$'];
end
switch stfname
case 'phi'
phi = zeros(DATA.Nx,DATA.Ny,1,Ns3D);
for it = 1:numel(DATA.Ts3D)
phi(:,:,1,it) = ifourier_GENE(compz(DATA.PHI(:,:,:,it)));
end
f2plot = phi; fname = '$\phi$';
case 'v_y'
dxphi = zeros(DATA.Nx,DATA.Ny,1,Ns3D);
for it = 1:numel(DATA.Ts3D)
dxphi(:,:,1,it) = ifourier_GENE(-1i*KX.*compz(DATA.PHI(:,:,:,it)).*LP);
end
f2plot = dxphi; fname = '$\langle \partial_x\phi\rangle_y$';
case 'v_x'
dyphi = zeros(DATA.Nx,DATA.Ny,1,Ns3D);
for it = 1:numel(DATA.Ts3D)
dyphi(:,:,1,it) = ifourier_GENE(1i*KY.*compz(DATA.PHI(:,:,:,it)).*LP);
end
f2plot = dyphi; fname = '$\langle \partial_y\phi\rangle_y$';
case 'szf'
dx2phi = zeros(DATA.Nx,DATA.Ny,1,Ns3D);
for it = 1:numel(DATA.Ts3D)
dx2phi(:,:,1,it) = ifourier_GENE(-KX.^2.*compz(DATA.PHI(:,:,:,it)).*LP);
end
f2plot = dx2phi; fname = '$\langle \partial_x^2\phi\rangle_y$';
end
clim = max(max(abs(plt(f2plot(:,:,1,its3D:ite3D)))));
subplot(313)
[TY,TX] = meshgrid(DATA.x,DATA.Ts3D);
pclr = pcolor(TX,TY,squeeze(plt(f2plot))');
set(pclr, 'edgecolor','none');
legend([nameL,fname,nameR]) %colorbar;
caxis(clim*[-1 1]);
cmap = bluewhitered(256);
colormap(cmap)
xlabel('$t c_s/R$'), ylabel('$x/\rho_s$');
if strcmp(stfname,'Gx')
subplot(311)
plot(DATA.Ts3D,squeeze(mean(plt(f2plot),1)));
end
%% Zonal vs NZonal energies
subplot(312)
it0 = 1; itend = Ns3D;
trange = it0:itend;
plt1 = @(x) x;%-x(1);
plt2 = @(x) x./max((x(its3D:ite3D)));
toplot = sum(squeeze(plt(f2plot)).^2,1); %ST from before
% plty = @(x) x(500:end)./max(squeeze(x(500:end)));
yyaxis left
% plot(plt1(DATA.Ts3D(trange)),plt2(E_Zmode_SK(trange)),'DisplayName','$k_{zf}^2|\phi_{kzf}|^2$');
plot(plt1(DATA.Ts3D(trange)),plt2(toplot(trange)),'DisplayName','Sum $A^2$');
ylim([-0.1, 1.5]); ylabel('$E_{Z}$')
yyaxis right
plot(plt1(DATA.Ts3D(trange)),plt2(E_NZmode_SK(trange)),'DisplayName','$(1+k^2)|\phi^k|^2$');
xlim([DATA.Ts3D(it0), DATA.Ts3D(itend)]);
ylim([-0.1, 1.5]); ylabel('$E_{NZ}$')
xlabel('$t c_s/R$'); grid on; set(gca,'xticklabel',[]);% xlim([0 500]);
end
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