job_pipeline.sh
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	#! /bin/bash
	#This script automatizes the launch of multiple job with chain dependency.
	nu_=0.01
	dnu=0.01

	Tm_=2000
	dTm=2000

	# First submit
	lastji=$(sbatch submit_00.cmd)
	lastjid=${lastji##* }
	echo $lastji
	#echo $lastjid

	for i in {1..1}; do
	# Setup indices of job id (current and previous one)
	im1=$(awk "BEGIN {print $i-1}")
	idm1=$(printf '%02d' $im1)
	id=$(printf '%02d' $i)

	# Create new submit file from older one
	awk -v "ID=$id" '{
	if (NR == 8) print "#SBATCH --error=err_"ID".txt";
	else if (NR == 9) print "#SBATCH --output=out_"ID".txt";
	else if (NR == 12) print "srun --cpu-bind=cores ./gyacomo 2 24 1 "ID;
	else print $0}' submit_$idm1.cmd > submit_$id.cmd

	# Create new fort file from older one
	awk -v "NU=$nu_" -v "TM=$Tm_" -v "J2L=$im1" '{
	if (NR == 04) print " tmax = "TM;
	else if (NR == 40) print " job2load = "J2L;
	else if (NR == 54) print " nu = "NU;
	else print $0}' fort_$idm1.90 > fort_$id.90

	# Retrieve last jobid and launch next job with dep
	lastji=$(sbatch --dependency=afterok:$lastjid submit_0$i.cmd)
	lastjid=${lastji##* }
	echo $lastjid

	# Increment variables
	nu_=$(awk "BEGIN {print $nu_+$dnu}")
	Tm_=$(awk "BEGIN {print $Tm_+$dTm}")
	done