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gyacomo/matlab/compute/compute_fa_2D.m
7790148cd129divided_output

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compute_fa_2D.m
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function [SS,XX,FF] = compute_fa_2D(data, options)
%% Compute the dispersion function from the moment hierarchi decomp.
% Normalized Hermite
Hp = @(p,s) polyval(HermitePoly(p),s)./sqrt(2.^p.*factorial(p));
% Hp = @(p,s) hermiteH(p,s)./sqrt(2.^p.*factorial(p));
% Laguerre
Lj = @(j,x) polyval(LaguerrePoly(j),x);
% Maxwellian factor
FaM = @(s,x) exp(-s.^2-x);
%meshgrid for efficient evaluation
[SS, XX] = meshgrid(options.SPAR, options.XPERP);
[~, ikx0] = min(abs(data.kx));
[~, iky0] = min(abs(data.ky));
kx_ = data.kx; ky_ = data.ky;
switch options.SPECIE
case 'e'
Napj_ = data.Nepj;
parray = double(data.Pe);
jarray = double(data.Je);
case 'i'
Napj_ = data.Nipj;
parray = double(data.Pi);
jarray = double(data.Ji);
end
switch options.iz
case 'avg'
Napj_ = mean(Napj_,5);
phi_ = mean(data.PHI,3);
otherwise
iz = options.iz;
Napj_ = Napj_(:,:,:,:,iz,:);
phi_ = data.PHI(:,:,iz);
end
Napj_ = squeeze(Napj_);
frames = options.T;
for it = 1:numel(options.T)
[~,frames(it)] = min(abs(options.T(it)-data.Ts5D));
end
frames = unique(frames);
Napj_ = mean(Napj_(:,:,:,:,frames),5);
Napj_ = squeeze(Napj_);
Np = numel(parray); Nj = numel(jarray);
if options.non_adiab
for ij_ = 1:Nj
for ikx = 1:data.Nkx
for iky = 1:data.Nky
kp_ = sqrt(kx_(ikx)^2 + ky_(iky)^2);
Napj_(1,ij_,iky,ikx) = Napj_(1,ij_,iky,ikx) + kernel(ij_,kp_)*phi_(iky,ikx);
end
end
end
end
if options.RMS
FF = zeros(data.Nky,data.Nkx,numel(options.XPERP),numel(options.SPAR));
FAM = FaM(SS,XX);
for ip_ = 1:Np
p_ = parray(ip_);
HH = Hp(p_,SS);
for ij_ = 1:Nj
j_ = jarray(ij_);
LL = Lj(j_,XX);
HLF = HH.*LL.*FAM;
for ikx = 1:data.Nkx
for iky = 1:data.Nky
FF(iky,ikx,:,:) = squeeze(FF(iky,ikx,:,:)) + Napj_(ip_,ij_,iky,ikx)*HLF;
end
end
end
end
else
FF = zeros(numel(options.XPERP),numel(options.SPAR));
FAM = FaM(SS,XX);
for ip_ = 1:Np
p_ = parray(ip_);
HH = Hp(p_,SS);
for ij_ = 1:Nj
j_ = jarray(ij_);
LL = Lj(j_,XX);
FF = FF + squeeze(Napj_(ip_,ij_,ikx0,iky0))*HH.*LL.*FAM;
end
end
end
FF = (FF.*conj(FF)); %|f_a|^2
% FF = abs(FF); %|f_a|
if options.RMS
% FF = squeeze(mean(mean(sqrt(FF),1),2)); %sqrt(<|f_a|^2>kx,ky)
FF = sqrt(squeeze(mean(mean(FF,1),2))); %<|f_a|>kx,ky
else
FF = sqrt(squeeze(FF)); %sqrt(<|f_a|>x,y)
end
FF = FF./max(max(FF));
FF = FF';
% FF = sqrt(FF);
% FF = FF';
end
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