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gyacomo/matlab/load/load_field_gene.m
55a2769372fegather_output

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load_field_gene.m
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% folder = '/misc/gene_results/NL_Zpinch_Kn_1.8_eta_0.25_nuSG_5e-2_mu_1e-2_KHR_2/';
% folder = '/misc/gene_results/NL_Zpinch_Kn_1.8_eta_0.25_nuSG_5e-3_gyroLES/';
% folder = '/misc/gene_results/HP_fig_2c_gyroLES/';
% folder = '/misc/gene_results/NL_Zpinch_Kn_1.8_eta_0.25_nuSG_5e-2_mu_1e-2_SGDK/';
% folder = '/misc/gene_results/NL_Zpinch_Kn_1.8_eta_0.25_nuSG_5e-2_mu_1e-2_30x30_Lv_smaller/';
% folder = '/misc/gene_results/HP_fig_2b_mu_1e-1/';
folder = '/misc/gene_results/HP_fig_2a_mu_1e-2/';
%% General info (domain etc.)
varargin{1} = 0; varargin{2} = 0;
general = loadGeneral_GENE(folder,-1,varargin);
nx = general.allParams.box.nx; Lx = general.allParams.box.Lx;
ny = general.allParams.box.ny; Ly = general.allParams.box.Ly;
nz = general.allParams.box.nz;
kx = general.coord.kx;
ky = general.coord.ky;
[KY,KX] = meshgrid(ky,kx);
x = Lx/nx.*(-nx/2:nx/2-1);
y = Ly/ny.*(-ny+1:ny-1);
%% Load dens_i
steps_range = 0:1:200; nt = numel(steps_range);
time_dens = 1:nt;
dens_xt = zeros(nt,nx);
% figure
for i = 1:nt
field_step = steps_range(i);
[field_c, t] = loadMomentumCpx(folder,-1,field_step-1,'ions','dens','none',0,[nx ny nz],0,general.allParams.data_format);
field_r = computeFXYZ(field_c,1);
dens_xt(i,:) = mean(field_r(:,:,1),2);
time_dens(i) = t;
end
if 1
%% Load phi
steps_range = 0:1:1000; nt = numel(steps_range);
time_phi = 1:nt;
phi_xt = zeros(nt,nx);
% figure
for i = 1:nt
field_step = steps_range(i);
[field_c, t] = loadFieldPhiCpx(folder,-1,field_step-1,'',0,0,[nx ny nz],general.allParams.data_format);
field_r = computeFXYZ(field_c,1);
phi_xt(i,:) = mean(field_r(:,:,1),2);
time_phi(i) = t;
end
end
if 0
%% Load v_ExB
steps_range = 0:2:1000; nt = numel(steps_range);
time_vExB = 1:nt;
vExB_xt = zeros(nt,nx);
% figure
for i = 1:nt
field_step = steps_range(i);
[field_c, t] = loadFieldPhiCpx(folder,-1,field_step-1,'',0,0,[nx ny nz],general.allParams.data_format);
field_r = computeFXYZ(-KX.*field_c,1);
vExB_xt(i,:) = mean(field_r(:,:,1),2);
time_vExB(i) = t;
end
end
if 0
%% compute Gx
steps_n = 0:1:500; nt1 = numel(steps_n);
steps_v = 0:2:1000; nt2 = numel(steps_v);
time_vExB = 1:nt1;
Gx = zeros(nt,1);
% figure
for i = 1:nt1
field_step = steps_n(i);
[field_c, t] = loadMomentumCpx(folder,-1,field_step-1,'ions','dens','none',0,[nx ny nz],0,general.allParams.data_format);
dens = computeFXYZ(field_c,1);
time_dens(i) = t;
field_step = steps_v(i);
[field_c, t] = loadFieldPhiCpx(folder,-1,field_step-1,'',0,0,[nx ny nz],general.allParams.data_format);
vExB = computeFXYZ(-KY.*field_c,1);
time_vExB(i) = t;
Gx(i) = mean(mean(squeeze(dens(:,:,1).*vExB(:,:,1))));
end
end
%% Plot spacetime
figure;
% [X_TX,Y_TX] = meshgrid(time_dens,x);
% pclr=pcolor(X_TX',Y_TX',dens_xt);
[X_TX,Y_TX] = meshgrid(time_phi,x);
pclr=pcolor(X_TX',Y_TX',phi_xt);
set(pclr, 'edgecolor','none');
colormap(bluewhitered(256))
%% Load <f>
fid=fopen([folder,'vsp.dat']);
nz=general.allParams.box.nz;
nv=general.allParams.box.nv;
nw=general.allParams.box.nw;
ns=general.allParams.specs.ns;
[~,~,gene_vsp]=GetFortranStep(fid,'DOUBLE',8,'LITTLE',1);
fclose(fid);
gridsize=prod([nz nv nw]);
%this is the least effective way of doing it, but fine
i_s = 1;
shift=(i_s-1)*gridsize;
f_avg=reshape(gene_vsp(shift+4*gridsize+1:shift+5*gridsize),[nz nv nw]);
figure
pclr=pcolor(squeeze(f_avg(1,:,:))')
set(pclr, 'edgecolor','none');
colormap(bluewhitered(256))
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