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gyacomo/matlab/loadGeneral_GENE.m
85911ff7c9f2gather_output

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loadGeneral_GENE.m
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function [general]= loadGeneral_GENE(folder,fileNumber,varargin)
% Loads all the input params of a simulation and returns them in a
% structured way, If [show] is provided then results are shown on screen
% in a compact version.
% To see the way the structure is filled, read the code or try it once.
%
% INPUTS:
% folder -> folder cointaining the simulation data
% fileNumber -> actual run according to our numeration
% [show] -> boolean to disply information on screen
% [use_h5] -> define whether h5 files are to be used (default 1)
%
% [general]= LOADGENERAL(folder,fileNumber,[show])
%
%%
%we here assume that all the runs are the same in terms of parameters.
fileNumber=fileNumber(1);
use_h5=0;
[allParams]=loadParams(folder,fileNumber,use_h5);
[coord]=loadCoord(folder,fileNumber,allParams.info.x_local,use_h5,allParams.specs.s1.name);
[geometry]=loadGeometry(folder,fileNumber,allParams.info.geom,use_h5,allParams.info.x_local,allParams.box.nx);
% if nargin==3 && varargin{1}==1
% describe_simulation(folder,fileNumber);
% end
general=struct('coord',coord, 'geometry',geometry, 'folder', folder, 'fileNumber',fileNumber, 'allParams',allParams);
if ~general.allParams.info.x_local
for i_s=1:general.allParams.specs.ns
act_spec=general.allParams.specs.(genvarname(['s',num2str(i_s)])).name;
if use_h5
file=fileNameH5(folder,['profiles_',act_spec],fileNumber );
T=h5read(file,'/temp/T');
omt=h5read(file,'/temp/omt');
n=h5read(file,'/density/n');
omn=h5read(file,'/density/omn');
x_o_a=h5read(file,'/position/x_o_a');
x_o_rho_ref=h5read(file,'/position/x_o_rho_ref');
general.allParams.specs.(genvarname(['s',num2str(i_s)])).profiles=struct('T',T,'n',n,'omn',omn,'omt',omt,'x_o_a',x_o_a,'x_o_rho_ref',x_o_rho_ref);
else
file=fileName_std(folder,['profiles_',act_spec],fileNumber );
fid=fopen(file);
nel=numel(regexp(fgetl(fid),'\s+','split'));
fgetl(fid);
data=textscan(fid,'%f');
data=reshape(data{:}, [nel-1 numel(data{:})/(nel-1)]);
fclose(fid);
general.allParams.specs.(genvarname(['s',num2str(i_s)])).profiles=...
struct('T',data(3,:)','n',data(4,:)','omt',data(5,:)','omn',data(6,:)','x_o_a',data(1,:)','x_o_rho_ref',data(2,:)');
end
end
general.prefactors=compute_prefactors(general.allParams,general.geometry,numel(coord.ky),numel(coord.z));
end
end
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