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gyacomo/wk/local_run.m
2a5f329a8148gather_output

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local_run.m
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addpath(genpath('../matlab')) % ... add
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% Set Up parameters
CLUSTER.TIME = '99:00:00'; % allocation time hh:mm:ss
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% PHYSICAL PARAMETERS
NU = 1.0; % Collision frequency
TAU = 1.0; % e/i temperature ratio
ETAB = 0.6; % Magnetic gradient
ETAN = 1.0; % Density gradient
ETAT = 0.0; % Temperature gradient
HD_CO = 0.5; % Hyper diffusivity cutoff ratio
NU_HYP = 0.1;
%% GRID PARAMETERS
N = 150; % Frequency gridpoints (Nkr = N/2)
L = 70; % Size of the squared frequency domain
PMAXE = 4; % Highest electron Hermite polynomial degree
JMAXE = 4; % Highest '' Laguerre ''
PMAXI = 4; % Highest ion Hermite polynomial degree
JMAXI = 4; % Highest '' Laguerre ''
MU_P = 0; % Hermite hyperdiffusivity -mu_p*(d/dvpar)^4 f
MU_J = 0; % Laguerre hyperdiffusivity -mu_j*(d/dvperp)^4 f
%% TIME PARAMETERS
TMAX = 600; % Maximal time unit
DT = 2e-2; % Time step
SPS0D = 1/DT; % Sampling per time unit for profiler
SPS2D = 1; % Sampling per time unit for 2D arrays
SPS5D = 1; % Sampling per time unit for 5D arrays
SPSCP = 0; % Sampling per time unit for checkpoints/10
RESTART = 0; % To restart from last checkpoint
JOB2LOAD= 0;
%% OPTIONS
% SIMID = 'local_nu_%0.0e'; % Name of the simulation
% SIMID = sprintf(SIMID,NU);
% SIMID = 'Marconi_DGGK_nu_1e+00'; % Name of the simulation
% SIMID = 'test_sapj_cut'; % Name of the simulation
SIMID = 'test_moments_damping'; % Name of the simulation
CO = -3; % Collision operator (0 : L.Bernstein, -1 : Full Coulomb, -2 : Dougherty, -3 : GK Dougherty)
CLOS = 2; % Closure model (0: =0 truncation, 1: semi coll, 2: Copy closure J+1 = J, P+2 = P)
KERN = 0; % Kernel model (0 : GK)
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%% unused
KR0KH = 0; A0KH = 0; % Background phi mode to drive Ray-Tay inst.
KREQ0 = 0; % put kr = 0
KPAR = 0.0; % Parellel wave vector component
LAMBDAD = 0.0;
NON_LIN = 1 *(1-KREQ0); % activate non-linearity (is cancelled if KREQ0 = 1)
kmax = N*pi/L;% Highest fourier mode
MU = NU_HYP/(HD_CO*kmax)^4 % Hyperdiffusivity coefficient
NOISE0 = 1.0e-5;
%% Setup and file management
setup
system('rm fort.90');
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