function [ DATA ] = load_gene_data( folder ) %to load gene data as for HeLaZ results namelist = read_namelist([folder,'parameters.dat']); DATA.namelist = namelist; %% Grid file = 'coord.dat.h5'; DATA.vp = h5read([folder,file],'/coord/vp'); DATA.Nvp = numel(DATA.vp); DATA.mu = h5read([folder,file],'/coord/mu'); DATA.Nmu = numel(DATA.mu); DATA.kx = h5read([folder,file],'/coord/kx'); DATA.Nkx = numel(DATA.kx); DATA.Nx = DATA.Nkx; DATA.ky = h5read([folder,file],'/coord/ky'); DATA.Nky = numel(DATA.ky); DATA.Ny = DATA.Nky*2-1; DATA.z = h5read([folder,file],'/coord/z'); DATA.Nz = numel(DATA.z); dkx = DATA.kx(2); dky = DATA.ky(2); Lx = 2*pi/dkx; Ly = 2*pi/dky; x = linspace(-Lx/2,Lx/2,DATA.Nx+1); x = x(1:end-1); y = linspace(-Ly/2,Ly/2,DATA.Ny+1); y = y(1:end-1); DATA.x = x; DATA.y = y; DATA.Lx = Lx; DATA.Ly = Ly; %% Transport file = 'nrg.dat.h5'; DATA.Ts0D = h5read([folder,file],'/nrgions/time'); DATA.PGAMMA_RI = h5read([folder,file],'/nrgions/Gamma_es'); DATA.HFLUX_X = h5read([folder,file],'/nrgions/Q_es'); %% fields and moments file = 'mom_ions.dat.h5'; DATA.Ts3D = h5read([folder,file],'/mom_ions/time'); DATA.DENS_I = zeros(DATA.Nkx,DATA.Nky,DATA.Nz,numel(DATA.Ts3D)); DATA.TPER_I = zeros(DATA.Nkx,DATA.Nky,DATA.Nz,numel(DATA.Ts3D)); DATA.TPAR_I = zeros(DATA.Nkx,DATA.Nky,DATA.Nz,numel(DATA.Ts3D)); DATA.PHI = zeros(DATA.Nkx,DATA.Nky,DATA.Nz,numel(DATA.Ts3D)); for jt = 1:numel(DATA.Ts3D) t = DATA.Ts3D(jt); [~, it] = min(abs(DATA.Ts3D-t)); tmp = h5read([folder,file],['/mom_ions/dens/',sprintf('%10.10d',it-1)]); DATA.DENS_I(:,:,:,it) = tmp.real + 1i*tmp.imaginary; tmp = h5read([folder,file],['/mom_ions/T_par/',sprintf('%10.10d',it-1)]); DATA.TPAR_I(:,:,:,it) = tmp.real + 1i*tmp.imaginary; tmp = h5read([folder,file],['/mom_ions/T_perp/',sprintf('%10.10d',it-1)]); DATA.TPER_I(:,:,:,it) = tmp.real + 1i*tmp.imaginary; tmp = h5read([folder,'field.dat.h5'],['/field/phi/',sprintf('%10.10d',it-1)]); DATA.PHI(:,:,:,it) = tmp.real + 1i*tmp.imaginary; end DATA.TEMP_I = (DATA.TPAR_I + 2*DATA.TPER_I)/3.0 - DATA.DENS_I; DATA.scale = 1; DATA.PARAMS = ['GENE']; DATA.param_title = 'GENE'; DATA.localdir = folder; %% Geometry CMD = ['tail -n ',num2str(namelist.box.nz0),' ',folder,namelist.geometry.magn_geometry{1},'.dat > tmp.txt']; system(CMD); DATA.geo_arrays = load('tmp.txt'); system('rm tmp.txt'); end