write_sbash_izar.m
0b5d00c4d901master

write_sbash_izar.m
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			% Write the input script "fort.90" with desired parameters
			INPUT = 'setup_and_run.sh';
			fid = fopen(INPUT,'wt');

			fprintf(fid,[...
			'#!/bin/bash\n',...
			'mkdir -p $SCRATCH/ahoffman/HeLaZ/wk\n',...
			...
			'cd $SCRATCH/ahoffman/HeLaZ/wk/\n',...
			...
			'mkdir -p ', BASIC.RESDIR,'\n',...
			'cd ',BASIC.RESDIR,'\n',...
			'cp $HOME/HeLaZ/wk/fort.90 .\n',...
			'cp $HOME/HeLaZ/wk/batch_script.sh .\n',...
			...
			'sbatch batch_script.sh\n',...
			'echo tail -f $SCRATCH/ahoffman/HeLaZ/results/',BASIC.SIMID,'/',BASIC.PARAMS,'/out.txt']);

			fclose(fid);
			system(['cp setup_and_run.sh ',BASIC.RESDIR,'/.']);

			% Write the sbatch script
			INPUT = 'batch_script.sh';
			fid = fopen(INPUT,'wt');

			fprintf(fid,[...
			'#!/bin/bash\n',...
			'#SBATCH --chdir $SCRATCH/ahoffman/HeLaZ/results/',BASIC.SIMID,'/',BASIC.PARAMS,'\n',...
			'#SBATCH --job-name ',CLUSTER.JNAME,'\n',...
			'#SBATCH --time ', CLUSTER.TIME,'\n',...
			'#SBATCH --nodes ', CLUSTER.NODES,'\n',...
			'#SBATCH --cpus-per-task ', CLUSTER.CPUPT,'\n',...
			'#SBATCH --ntasks-per-node ', CLUSTER.NTPN,'\n',...
			'#SBATCH --mem ', CLUSTER.MEM,'\n',...
			'#SBATCH --partition ',CLUSTER.PART,'\n',...
			'module purge\n',...
			'module load intel/19.0.5\n',...
			'module load intel-mpi/2019.5.281\n',...
			'module load fftw/3.3.8-mpi-openmp\n',...
			'module load hdf5/1.10.6-mpi\n',...
			'srun --cpu-bind=cores ./../../../bin/helaz ',num2str(NP_P),' ',num2str(NP_KX)]);

			fclose(fid);
			system(['cp batch_script.sh ',BASIC.RESDIR,'/.']);

			system('scp {fort.90,setup_and_run.sh,batch_script.sh} ahoffman@izar.epfl.ch:/home/ahoffman/HeLaZ/wk');