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iCAPs/packages/spm12/bin/spm12-matlab
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spm12-matlab
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#!/bin/sh
#
# Command Line Interface for SPM
# SPM: http://www.fil.ion.ucl.ac.uk/spm/
#
# Copyright (C) 2017 Wellcome Trust Centre for Neuroimaging
#
# Guillaume Flandin
# $Id: spm12-matlab 7014 2017-02-13 12:31:33Z guillaume $
PLATFORM=$(uname)
if [ "${MATLAB_EXEC}" = "" ]; then
MATLAB_EXEC="matlab"
fi
if [ "$(command -v ${MATLAB_EXEC})" = "" ]; then
echo "MATLAB executable not found." >&2
exit 1
fi
if [ "${SPM_HOME}" = "" ]; then
if [ "${PLATFORM}" = "Darwin" ]; then
RL_FLAG="" # alternative needed
else
RL_FLAG="-f"
fi
SPM_HOME=$(readlink ${RL_FLAG} "$0")
SPM_HOME=$(dirname "$(dirname "${SPM_HOME}")")
fi
if [ ! -d "${SPM_HOME}" ]; then
echo "SPM directory not found." >&2
exit 1
fi
INPUTS=""
for arg in "$@"
do
INPUTS=${INPUTS}"'${arg//\'/''}',"
done
if [ "${INPUTS}" != "" ]; then
INPUTS=${INPUTS:0:$((${#INPUTS}-1))}
fi
if [ "${PLATFORM}" = "Darwin" ]; then
TMPFILE=$(mktemp -u -t spm)
TMPFILE=${TMPFILE//./_}.m
else
TMPFILE=$(mktemp --tmpdir -u spm_XXXXXX).m
fi
cat << EOF > ${TMPFILE}
warning('off','backtrace');
cd(getenv('PWD'));
spm_dir = '${SPM_HOME}';
try, spm_dir = cd(cd(spm_dir)); end % canonical path
addpath(spm_dir);
try
spm('Ver');
catch
fprintf(['Error: Cannot find the SPM directory. ' ...
'Set SPM_HOME environment variable.\n']);
exit(1);
end
warning('on','backtrace');
spm_standalone(${INPUTS});
while ~isempty(get(0,'CurrentFigure'))
waitfor(get(0,'CurrentFigure'));
end
exit(0);
EOF
${MATLAB_EXEC} -nosplash -nodesktop ${MATLAB_FLAGS} -r "run('${TMPFILE}');" | tail -n +11
ERR=${PIPESTATUS[0]}
rm -f ${TMPFILE}
if [[ ${ERR} -eq 0 ]]; then
exit 0
else
exit 1
fi
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