multimodal_fmri_script.m
e5f5005bb2efmaster

multimodal_fmri_script.m
View Options

			% To use this example, please
			% 1) place this file in your MATLAB path
			% 2) place the 'multimodal_fmri_template.m' in the 'fMRI' folder of your
			% copy of the multimodal dataset
			% 3) edit the line PLEASE_ENTER_YOUR_PATH_TO_MULTIMODAL_DATASET below

			% Inputs per subject
			% * subject dir
			% * EPI images
			% - session 1
			% - session 2
			% * Anatomy image
			% * Multiple conditions
			% - session 1
			% - session 2
			% Assumed data organisation
			% multimodal/fMRI/{Session1,Session2}

			studydir = PLEASE_ENTER_YOUR_PATH_TO_MULTIMODAL_DATASET;
			subjdirs = {'.'};
			jobs = cell(size(subjdirs));
			[jobs{:}] = deal(fullfile(studydir,'fMRI','multimodal_fmri_template.m'));

			inputs = cell(6,numel(subjdirs));
			for sub = 1:numel(subjdirs)
			inputs{1,sub} = {fullfile(studydir,subjdirs{sub})};
			inputs{2,sub} = cellstr(spm_select('FPList',fullfile(inputs{1,sub}{1}, ...
			'fMRI','Session1'),'^f.*\.img'));
			inputs{3,sub} = cellstr(spm_select('FPList',fullfile(inputs{1,sub}{1}, ...
			'fMRI','Session2'),'^f.*\.img'));
			inputs{4,sub} = {fullfile(inputs{1,sub}{1},'sMRI','smri.img')};
			inputs{5,sub} = {fullfile(inputs{1,sub}{1},'fMRI','trials_ses1.mat')};
			inputs{6,sub} = {fullfile(inputs{1,sub}{1},'fMRI','trials_ses2.mat')};
			end
			spm('defaults','fmri');
			spm_jobman('run',jobs,inputs{:});