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@Article{rnah_latency,
author = rnah # and # cjp # and # {M.D. Rugg} # and # rt # and # karl,
title = {Detecting latency differences in event-related BOLD responses: application to words versus non-words and initial versus repeated face presentations},
journal = ni,
year = {2002},
volume = {15},
number = {1},
pages = {83-97},
keyword = {fMRI, event-related},
pdf = {/spm/doc/papers/rnah_latency.pdf}
}
@Article{sjk_aibf_multi,
author = sjk # and # karl,
title = {Anatomically informed basis functions in multisubject studies},
journal = hbm,
year = {2002},
volume = {16},
number = {1},
pages = {36-46},
keyword = {smoothness,spatial,group},
pdf = {/spm/doc/papers/sjk_aibf_multi.pdf}
}
@Article{cjp_subtractions,
author = cjp # and # {C.J. Moore} # and # karl,
title = {Subtractions, conjunctions, and interactions in experimental design of activation studies},
journal = hbm,
year = {1997},
volume = {5},
number = {4},
pages = {264-272},
keyword = {design,conjunction,introduction},
pdf = {/spm/doc/papers/cjp_subtractions.pdf}
}
@Article{karl_nonlinear_pca,
author = karl # and # {J. Phillips and D. Chawla} # and # cb,
title = {Revealing interactions among brain systems with nonlinear PCA},
journal = hbm,
year = {1999},
volume = {8},
number = {3},
pages = {92-97},
keyword = {connectivity,nonlinear},
pdf = {/spm/doc/papers/karl_nonlinear_pca.pdf}
}
@Article{kjw_tests_nonfocal,
author = kjw # and # jbp # and # {A.C. Vandal} # and # karl,
title = {Tests for distributed, nonfocal brain activation},
journal = ni,
year = {1995},
volume = {2},
number = {3},
pages = {183-194},
keyword = {RFT,smoothness},
pdf = {/spm/doc/papers/kjw_tests_nonfocal.pdf}
}
@Article{jbp_combining,
author = jbp # and # kjw # and # {A.C. Evans} # and # karl,
title = {Combining spatial extent and peak intensity to test for activations in functional imaging},
journal = ni,
year = {1997},
volume = {5},
number = {2},
pages = {83-96},
keyword = {RFT,smoothness},
pdf = {/spm/doc/papers/jbp_combining.pdf}
}
@Article{mcgonigle_session,
author = {D. McGonigle and A. Howseman and B.S. Athwal} # and # karl # and # rsjf # and # aph,
title = {Variability in f{MRI}: an examination of intersession differences},
journal = ni,
year = {2000},
volume = {11},
number = {6},
pages = {708-734},
keyword = {RFX,group},
pdf = {/spm/doc/papers/mcgonigle_session.pdf}
}
@Article{ja_geometric,
author = ja # and # {C. Hutton} # and # john # and # rt # and # karl,
title = {Modelling geometric deformations in {EPI} time series},
journal = ni,
year = {2001},
volume = {13},
number = {5},
pages = {903-919},
keyword = {spatial},
pdf = {/spm/doc/papers/ja_geometric.pdf}
}
@Article{ja_global,
author = ja # and # john # and # karl,
title = {A global estimator unbiased by local changes},
journal = ni,
year = {2001},
volume = {13},
number = {6},
pages = {1193-1206},
keyword = {spatial},
pdf = {/spm/doc/papers/ja_global.pdf}
}
@Article{chloe_distortion,
author = {C. Hutton and A. Bork and O. Josephs and R. Deichmann and J. Ashburner and R. Turner},
title = {Image distortion correction in {fMRI}: A quantitative evaluation},
journal = ni,
volume = {16},
pages = {217--240},
year = {2002}
}
@InProceedings{chloe_distortion2,
author = {C. Hutton and R. Deichmann and R. Turner and J. L. R. Andersson},
title = {Combined correction for geometric distortion and its interaction with head motion in {fMRI}},
booktitle = {Proc. ISMRM 12},
address = {Kyoto, Japan},
year = {2004}
}
@Article{velt_sampling,
author = {D. Veltman and } # am # and # karl # and # cjp,
title = {The importance of distributed sampling in blocked functional magnetic resonance imaging designs},
journal = ni,
year = {2002},
volume = {17},
number = {3},
pages = {1203-1206},
keyword = {design,event-related,fMRI},
pdf = {/spm/doc/papers/velt_sampling.pdf}
}
@Article{am_coupling,
author = am # and # cjp # and # karl,
title = {Non Linear Coupling Between Evoked r{CBF} and {BOLD} Signals: A Simulation Study of Hemodynamic Responses},
journal = ni,
year = {2001},
volume = {14},
number = {4},
pages = {862-872},
keyword = {volterra,nonlinear,simulation},
pdf = {/spm/doc/papers/am_coupling.pdf}
}
@Article{am_vbmreview,
author = am # and # cjp # and # karl # and # john,
title = {Voxel-Based Morphometry of the Human Brain: Methods and Applications},
journal = {{C}urrent {M}edical {I}maging {R}eviews},
year = {2005},
OPTvolume = {1},
number = {},
pages = {105-113},
keyword = {VBM},
pdf = {/spm/doc/papers/am_vbmreview.pdf}
}
@Article{am_comparing,
author = am # and # rnah # and # cjp # and # karl,
title = {Comparing event-related and epoch analysis in blocked design f{MRI}},
journal = ni,
year = {2003},
volume = {18},
number = {3},
pages = {806-810},
keyword = {design,event-related,fMRI},
pdf = {/spm/doc/papers/am_comparing.pdf},
doi = {10.1016/S1053-8119(02)00027-7}
}
@Article{am_sem,
author = am # and # will # and # cjp # and # drg # and # karl,
title = {Effective connectivity and intersubject variability: using a multisubject network to test differences and commonalities},
journal = ni,
year = {2002},
volume = {17},
number = {3},
pages = {1459-1469},
keyword = {connectivity,group},
pdf = {/spm/doc/papers/am_sem.pdf}
}
@Article{am_efficiency,
author = am # and # cjp # and # rnah # and # karl,
title = {Estimating efficiency a priori: a comparison of blocked and randomized designs},
journal = ni,
year = {2003},
volume = {18},
number = {3},
pages = {798-805},
keyword = {design,event-related,fMRI},
pdf = {/spm/doc/papers/am_efficiency.pdf},
doi = {10.1016/S1053-8119(02)00040-X}
}
@Article{sjk_heuristic,
author = sjk # and # deg # and # karl,
title = {A heuristic for the degrees of freedom of statistics based on multiple variance parameters},
journal = ni,
year = {2003},
volume = {20},
number = {1},
pages = {466-478},
keyword = {autocorrelation,nonsphericity},
pdf = {/spm/doc/papers/sjk_heuristic.pdf}
}
@Article{karl_posterior,
author = karl # and # will,
title = {Posterior probability maps and {SPM}s},
journal = ni,
year = {2003},
volume = {19},
number = {3},
pages = {1240-1249},
keyword = {Bayesian,hierarchical,PPM,EM},
pdf = {/spm/doc/papers/karl_posterior.pdf}
}
@Article{karl_anatomy,
author = karl # and # john,
title = {Generative and recognition models for neuroanatomy},
journal = ni,
year = {2004},
volume = {23},
number = {1},
pages = {21-24},
keyword = {spatial,Bayesian,EM},
pdf = {/spm/doc/papers/karl_anatomy.pdf}
}
@Article{john_should,
author = john # and # karl,
title = {Why voxel-based morphometry should be used},
journal = ni,
year = {2001},
volume = {14},
number = {6},
pages = {1238-1243},
keyword = {VBM,spatial},
pdf = {/spm/doc/papers/john_should.pdf},
}
@Article{ salmond_precision,
author = {C.H. Salmond} # and # john # and# {F. Vargha-Khadem and A. Connelly and D. G. Gadian} # and # karl,
title = {The precision of anatomical normalisation in the medial temporal lobe using spatial basis functions},
journal = ni,
year = {2002},
volume = {17},
number = {1},
pages = {507-512},
keyword = {spatial},
pdf = {/spm/doc/papers/salmond_precision.pdf}
}
@Article{salmond_dist,
author = {C.H. Salmond} # and # john # { and F. Vargha-Khadem and A. Connelly and D. G. Gadian and} # karl,
title = {The precision of anatomical normalisation in the medial temporal lobe using spatial basis functions},
journal = ni,
year = {2002},
volume = {17},
number = {1},
pages = {507-512},
keyword = {spatial},
pdf = {/spm/doc/papers/salmond_dist.pdf}
}
@Article{od_measures,
author = od # and # {D. Cosmelli} # and # karl,
title = {Evaluation of different measures of functional connectivity using a neural mass model},
journal = ni,
year = {2004},
volume = {21},
number = {2},
pages = {659--673},
keyword = {connectivity, dynamical, EEG},
pdf = {/spm/doc/papers/od_measures.pdf},
}
@Article{kiebel_spm_eeg1,
author = sjk # and # karl,
title = {Statistical {P}arametric {M}apping for {E}vent-{R}elated {P}otentials {I}: {G}eneric {C}onsiderations},
journal = ni,
year = {2004},
volume = {22},
number = {2},
pages = {492--502},
keyword = {EEG,GLM,ERP,MEG},
pdf = {/spm/doc/papers/sjk_erp1.pdf},
}
@Article{kiebel_spm_eeg2,
author = sjk # and # karl,
title = {Statistical {P}arametric {M}apping for {E}vent-{R}elated {P}otentials {II}: {A} {H}ierarchical {T}emporal {M}odel},
journal = ni,
year = {2004},
volume = {22},
number = {2},
pages = {503--520},
keyword = {EEG,GLM,ERP,MEG},
pdf = {/spm/doc/papers/sjk_erp2.pdf}
}
@Article{kiebel_eeg3,
author = sjk # and # {C. Tallon-Baudry} # and # karl,
title = {Parametric analysis of oscillatory activity as measured with {EEG/MEG}},
journal = hbm,
year = {2005},
volume = {26},
number = {3},
pages = {170--177},
keyword = {EEG,GLM,ERP,MEG},
pdf = {/spm/doc/papers/sjk_eeg3.pdf}
}
@Article{klaas_biophys,
author = klaas # and # lee # and # will # and # karl,
title = {Biophysical models of f{MRI} responses},
journal = conb,
year = 2004,
volume = 14,
number = 5,
pages = {629--635},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/conb.pdf}
}
@Incollection{karl_responses,
author = karl # and # will # and # od,
title = {Modelling brain responses},
editor = {M.F. Glabus},
year = 2005,
booktitle = {International {R}eview of {N}eurobiology, Neuroimaging, {P}art {A}},
publisher = {Elsevier},
keyword = {Introduction}
}
@Article{cdcm,
author = will # and # klaas # and # am # and # karl,
title = {Comparing {D}ynamic {C}ausal {M}odels},
journal = ni,
year = {2004},
volume = {22},
number = {3},
pages = {1157--1172},
keyword = {Bayesian,connectivity,fMRI, DCM,BMC},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/nimg1091.pdf}
}
@Article{dti_dcm,
author = {N. Ramnani and T.E.J. Behrens} # and # will # and # {P.M. Matthews},
title = {New approaches for exploring anatomic and functional connectivity in the human brain},
journal = {Biological Psychiatry},
year = {2004},
note = {In Press},
keyword = {introduction,DCM},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/new_app.pdf}
}
@InCollection{penny_class4,
author = will # and # karl,
editor = {L. Landini},
booktitle = {Advanced Image Processing in {M}agnetic {R}esonance {I}maging},
title = {Classical and {B}ayesian {I}inference in f{MRI}},
publisher = {Marcel Dekker},
year = {2004},
keyword = {introduction},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/classical.pdf}
}
@Article{sem_dcm_integration,
author = will # and # klaas # and # am # and # karl,
title = {Modelling {F}unctional {I}ntegration: {A} {C}omparison of {S}tructural {E}quation and {D}ynamic {C}ausal and {M}odels},
journal = ni,
year = {2004},
volume = 23,
note = {Supplement 1},
pages = {264-274},
keyword = {introduction,connectivity,DCM},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/integration.pdf}
}
@InCollection{karl_hbf2_intro,
author = karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Introduction: {E}xperimental design and statistical parametric mapping},
publisher = {Academic Press},
year = {2003},
keyword = {GLM,introduction},
pdf = {/spm/doc/books/hbf2/pdfs/Ch1.pdf}
}
@InCollection{john_hbf2_2,
author = john # and # karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Rigid body registration},
publisher = {Academic Press},
year = {2003},
keyword = {introduction},
pdf = {/spm/doc/books/hbf2/pdfs/Ch2.pdf}
}
@InCollection{john_hbf2_3,
author = john # and # karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Spatial normalization using basis functions},
publisher = {Academic Press},
year = {2003},
keyword = {introduction},
pdf = {/spm/doc/books/hbf2/pdfs/Ch3.pdf}
}
@InCollection{john_hbf2_4,
author = john # and # karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {High-dimensional image warping},
publisher = {Academic Press},
year = {2003},
keyword = {introduction},
pdf = {/spm/doc/books/hbf2/pdfs/Ch4.pdf}
}
@InCollection{john_hbf2_5,
author = john # and # karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Image segmentation},
publisher = {Academic Press},
year = {2003},
keyword = {introduction},
pdf = {/spm/doc/books/hbf2/pdfs/Ch5.pdf}
}
@InCollection{john_hbf2_6,
author = john # and # karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Morphometry},
publisher = {Academic Press},
year = {2003},
keyword = {introduction},
pdf = {/spm/doc/books/hbf2/pdfs/Ch6.pdf}
}
@InCollection{stefan_hbf2,
author = sjk,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {The general linear model},
publisher = {Academic Press},
year = {2003},
keyword = {introduction},
pdf = {/spm/doc/books/hbf2/pdfs/Ch7.pdf}
}
@InCollection{jb_hbf2,
author = jbp,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Contrasts and classical inference},
publisher = {Academic Press},
year = {2003},
keyword = {GLM,introduction,contrasts},
pdf = {/spm/doc/books/hbf2/pdfs/Ch8.pdf}
}
@InCollection{daniel_hbf2,
author = deg,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Variance {C}omponents},
publisher = {Academic Press},
year = {2003},
keyword = {nonsphericity},
pdf = {/spm/doc/books/hbf2/pdfs/Ch9.pdf}
}
@InCollection{rnah_conv,
author = rnah,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Analysis of f{MRI} time series},
publisher = {Academic Press},
year = {2003},
keyword = {GLM,introduction,contrasts},
pdf = {/spm/doc/books/hbf2/pdfs/Ch10.pdf}
}
@InCollection{daniel_hbf2_hemo,
author = deg,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Hemodynamic modelling},
publisher = {Academic Press},
year = {2003},
keyword = {nonsphericity},
pdf = {/spm/doc/books/hbf2/pdfs/Ch11.pdf}
}
@InCollection{will_hbf2_rfx,
author = will # and # aph # and # karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Random effects analysis},
publisher = {Academic Press},
year = {2003},
keyword = {RFX,group,introduction},
pdf = {/spm/doc/books/hbf2/pdfs/Ch12.pdf}
}
@InCollection{will_hbf2_hier,
author = will # and # aph # and # karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Hierarchical Models},
publisher = {Academic Press},
year = {2003},
keyword = {Bayesian,GLM,group,introduction,RFX,hierarchical},
pdf = {/spm/doc/books/hbf2/pdfs/Ch13.pdf}
}
@InCollection{brett_hbf2,
author = {M. Brett} # and # will # and # sjk,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Introduction to Random field theory},
publisher = {Academic Press},
year = {2003},
keyword = {introduction,RFT},
pdf = {/spm/doc/books/hbf2/pdfs/Ch14.pdf}
}
@InCollection{kjw_hbf2,
author = kjw,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Developments in random field theory},
publisher = {Academic Press},
year = {2003},
keyword = {RFT},
pdf = {/spm/doc/books/hbf2/pdfs/Ch15.pdf}
}
@InCollection{tom_hbf2,
author = tom # and # aph,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Nonparametric approaches},
publisher = {Academic Press},
year = {2003},
keyword = {nonparametric,RFT,group},
pdf = {/spm/doc/books/hbf2/pdfs/Ch16.pdf}
}
@InCollection{will_hbf2_bayes,
author = will # and # karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Classical and {B}ayesian inference},
publisher = {Academic Press},
year = {2003},
keyword = {Bayesian,fMRI,hierarchical,nonsphericity,PPM,REML},
pdf = {/spm/doc/books/hbf2/pdfs/Ch17.pdf}
}
@InCollection{karl_hbf2_18,
author = karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Functional integration},
publisher = {Academic Press},
year = {2003},
keyword = {connectivity},
pdf = {/spm/doc/books/hbf2/pdfs/Ch18.pdf}
}
@InCollection{karl_hbf2_19,
author = karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Functional connectivity},
publisher = {Academic Press},
year = {2003},
keyword = {connectivity},
pdf = {/spm/doc/books/hbf2/pdfs/Ch19.pdf}
}
@InCollection{karl_hbf2_21,
author = karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Volterra kernels and connectivity},
publisher = {Academic Press},
year = {2003},
keyword = {connectivity,volterra,nonlinear},
pdf = {/spm/doc/books/hbf2/pdfs/Ch21.pdf}
}
@InCollection{karl_hbf2_22,
author = karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Dynamic Causal Models},
publisher = {Academic Press},
year = {2003},
keyword = {connectivity, dynamical, Bayesian, DCM},
pdf = {/spm/doc/books/hbf2/pdfs/Ch22.pdf}
}
@InCollection{karl_hbf2_23,
author = karl,
editor = rsjf # and # karl # and # cf # and # rd # and # karl # and # cjp # and # sz # and # john # and # will,
booktitle = {{H}uman {B}rain {F}unction},
edition = {2nd},
title = {Mathematical appendix},
publisher = {Academic Press},
year = {2003},
keyword = {connectivity},
pdf = {/spm/doc/books/hbf2/pdfs/Ch23.pdf}
}
@Article{david_03,
author = od # and # karl,
title = {A neural mass model for {MEG}/{EEG}: coupling and neuronal dynamics},
journal = ni,
year = {2003},
volume = {20},
number = {3},
pages = {1743--1755},
keyword = {nonlinear, dynamical, EEG},
pdf = {/spm/doc/papers/od_neural_mass.pdf},
doi = {10.1016/j.neuroimage.2003.07.015}
}
@Article{harrison03,
author = lee # and # will # and # karl,
title = {Multivariate Autoregressive Modelling of f{MRI} time series},
journal = ni,
year = {2003},
volume = {19},
number = {4},
pages = {1477--1491},
keyboard = {connectivity,fMRI},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/mar_june_2003.pdf}
}
@Article{dcm,
author = karl # and # lee # and # will,
title = {Dynamic {C}ausal {M}odelling},
journal = ni,
year = {2003},
volume = {19},
number = {4},
pages = {1273--1302},
keyword = {connectivity,fMRI,DCM},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/dcm.pdf}
}
@Article{gitelman_03,
author = drg # and # will # and # john # and # karl,
title = {Modeling regional and psychophysiologic interactions in {fMRI}: the importance of hemodynamic deconvolution},
journal = ni,
year = {2003},
volume = {19},
pages = {200--207},
keyword = {connectivity,fMRI,PPI},
doi = {10.1016/S1053-8119(03)00058-2},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/ppi_revisited_final.pdf}
}
@Article{penny_mix_glm,
author = will # and # karl,
title = {Mixtures of General Linear Models for Functional Neuroimaging},
journal = ieeetmi,
year = {2003},
volume = {22},
number = {4},
pages = {504--514},
keyword = {Mixture,GLM,Bayesian,fMRI,spatial,EM},
ps = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/iee_final.ps}
}
@Article{vb_fmri_ar,
author = will # and # sjk # and # karl,
title = {Variational {B}ayesian {I}nference for f{MRI} time series},
journal = ni,
year = {2003},
volume = {19},
number = {3},
pages = {727--741},
keyword = {autocorrelation,Bayesian,fMRI,PPM},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/glmar.pdf}
}
@Book{hbf2,
author = rsjf # and # karl # and # cf # and # rd # and # cjp # and # sz # and # john # and # will,
title = {{H}uman {B}rain {F}unction},
publisher = {Academic Press},
year = {2003},
edition = {2nd},
keyword = {introduction},
url = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf2/}
}
@Article{peb2,
author = karl # and # deg # and # rnah # and # sjk # and # cp # and # john,
title = {Classical and {B}ayesian Inference in Neuroimaging: Applications},
journal = ni,
volume = {16},
pages = {484--512},
year = {2002},
keyword = {Bayesian, fMRI, PPM},
pdf = {/spm/doc/papers/karl_peb_app.pdf}
}
@Article{hdm,
author = karl,
title = {Bayesian Estimation of Dynamical Systems: {A}n Application to f{MRI}},
journal = ni,
year = {2002},
volume = {16},
pages = {513--530},
keyword = {dynamical,Bayesian,fMRI},
pdf = {/spm/doc/papers/karl_bayes_dyn.pdf}
}
@Article{phillips_aibf,
author = cp # and # {M.D. Rugg} # and # karl,
title = {Anatomically {I}nformed {B}asis {F}unctions for {EEG} {S}ource {L}ocalisation: {C}ombining {F}unctional and {A}natomical {C}onstraints},
journal = ni,
year = {2002},
volume = {16},
number = {3},
pages = {678--695},
keyword = {spatial,MRI,EEG},
pdf = {/spm/doc/papers/cp_aibf.pdf}
}
@Article{phillips_peb,
author = cp # and # {M.D. Rugg} # and # karl,
title = {Systematic Regularization of Linear Inverse Solutions of the {EEG} Source Localisation Problem},
journal = ni,
year = {2002},
volume = {17},
number = {1},
pages = {287--301},
keyword = {EEG,spatial},
pdf = {/spm/doc/papers/cp_reg.pdf}
}
@Article{peb1,
author = karl # and # will # and # cp # and # sjk # and # {G. Hinton} # and # john,
title = {Classical and {Bayesian} Inference in Neuroimaging: Theory},
journal = ni,
volume = {16},
pages = {465--483},
year = {2002},
keyword = {Bayesian,PPM,EM,REML},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/bayes1.pdf}
}
@TechReport{penny_wavelet,
author = will,
title = {Wavelet smoothing of f{MRI} activation images},
institution = {Wellcome Department of Imaging Neuroscience, ION, UCL},
year = {2002},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/wave.pdf},
keyword = {fMRI,spatial}
}
@TechReport{will_anno,
author = will,
title = {Statistical Parametric Mapping: an annotated bibliography},
institution = {Wellcome Department of Imaging Neuroscience, ION, UCL},
year = {2001},
pdf = {/spm/doc/spmbib.pdf},
url = {/spm/doc/spmbib.html},
keyword = {introduction}
}
@TechReport{karl_history,
author = karl,
title = {A short history of statistical parametric mapping in functional neuroimaging},
institution = {Wellcome Department of Imaging Neuroscience, ION, UCL},
year = {2002},
pdf = {/spm/doc/papers/History.pdf},
url = {/spm/doc/history.html},
keyword = {introduction}
}
@Article{rnah_basis,
author = rnah # and # {M.D. Rugg} # and # karl,
title = {The choice of basis functions in event-related f{MRI}},
journal = ni,
year = 2001,
volume = 13,
number = 6,
pages = 149,
month = {June},
note = {Supplement 1},
keyword = {event-related},
pdf = {/spm/doc/papers/rnah_choice.pdf},
}
@Article{attention_effcon,
author = karl # and # cb,
title = {Attentional modulation of effective connectivity from {V2} to {V5/MT} in humans},
journal = pnas,
year = {2000},
volume = {97},
number = {13},
pages = {7591--7596},
keyword = {connectivity, fMRI},
pdf = {/spm/doc/papers/karl_att_mod.pdf},
}
@Article{hopfinger,
author = {J.B. Hopfinger} # and # cb # and # aph # and # karl,
title = {A study of analysis parameters that influence the sensitivity of event-related f{MRI} analyses},
journal = ni,
year = {2000},
volume = {11},
pages = {326--333},
keyword = {event-related, fMRI}
}
@PhDThesis{lucy_phd,
author = ll,
title = {Imaging the effects of 1Hz Repetitive Transcranial Magnetic Stimulation during motor behaviour},
school = {University College London},
year = {2004},
keyword = {TMS},
pdf = {/spm/doc/theses/lucy/lucy_lee_phd.pdf}
}
@PhDThesis{sjk_phd,
author = sjk,
title = {Anatomically informed basis functions},
school = {University College London},
year = {2000},
keyword = {spatial,fMRI},
pdf = {/spm/doc/theses/stefan/skiebel_thesis.pdf}
}
@PhDThesis{john_phd,
author = john,
title = {Computational Neuroanatomy},
school = {University College London},
year = {2000},
keyword = {spatial,registration,normalisation},
url = {/spm/doc/theses/john/}
}
@PhDThesis{cp_phd,
author = cp,
title = {Source estimation in {EEG}},
school = {University de Liege, Belgium},
year = {2000},
keyword = {EEG,MEG,Bayesian},
pdf = {/spm/doc/theses/chrisp/localis.pdf}
}
@Article{ashburner00a,
author = john # and # ja # and # karl,
title = {Image Registration using a Symmetric Prior - in Three-Dimensions},
journal = hbm,
volume = {9},
number = {4},
pages = {212--225},
year = {2000},
keyword = {spatial,Bayesian,registration,MRI}
}
@Article{ashburner00b,
author = john # and # karl,
title = {Voxel-Based Morphometry -- The Methods},
journal = ni,
volume = {11},
pages = {805--821},
year = {2000},
keyword = {spatial,VBM,MRI},
pdf = {/spm/doc/papers/john_vbm_methods.pdf}
}
@Article{ashburner05,
author = john # and # karl,
title = {Unified segmentation},
journal = ni,
volume = {26},
pages = {839--851},
year = {2005},
keyword = {spatial,VBM,Bayesian,registration,normalisation,MRI,segment},
doi = {doi:10.1016/j.neuroimage.2005.02.018}
}
@Article{ashburner07,
author = john,
title = {A Fast Diffeomorphic Image Registration Algorithm},
journal = ni,
volume = {38},
number = 1,
pages = {95--113},
year = {2007},
doi = {http://dx.doi.org/10.1016/j.neuroimage.2007.07.007},
keyword = {spatial,registration,normalisation,MRI},
}
@InCollection{experimental,
author = karl,
title = {Experimental Design and Statistical Issues},
booktitle = {Brain Mapping: The Disorders},
pages = {33-58},
publisher = {Academic Press},
year = {2000},
keyword = {design, GLM}
}
@Article{ friston00,
author = karl # and # oj # and # {E. Zarahn} # and # aph # and # {S. Rouquette} # and # jbp,
title = {To Smooth or Not to Smooth? {Bias} and Efficiency in {fMRI} Time-Series Analysis },
journal = ni,
year = {2000},
volume = {12},
pages = {196--208},
keyword = {fMRI,autocorrelation,nonsphericity},
pdf = {/spm/doc/papers/karl_to_smooth.pdf}
}
@Article{kiebel00,
author = sjk # and # {R. Goebel} # and # karl,
title = {Anatomically Informed Basis Functions},
journal = ni,
year = {2000},
volume = {11},
number = {6},
pages = {656--667},
keyword = {fMRI, MRI, spatial},
pdf = {/spm/doc/papers/sjk_aibf.pdf}
}
@Article{npca1,
author = karl # and # {J. Phillips and D. Chawla} # and # cb,
title = {Nonlinear {PCA}: Characterizing interactions between modes of brain activity},
journal = ptrs,
year = {2000},
volume = {355},
pages = {135--146},
keyword = {connectivity}
}
@Article{test_conj,
author = kjw # and # karl,
title = {A test for a conjunction},
journal = {Statistics and Probability Letters},
year = {2000},
volume = {47},
pages = {135--140},
keyword = {conjunction, RFT},
pdf = {/spm/doc/papers/kjw_conjunction.pdf}
}
@Article{horwitz2000,
author = {B. Horwitz} # and # karl # and # {J.G. Taylor},
title = {Neural Modeling and Functional Brain Imaging: An Overview},
journal = nnet,
year = {2000},
volume = {13},
pages = {829--846},
keyword = {connectivity},
pdf = {/spm/doc/papers/horwitz_overview.pdf}
}
@Article{buchel2000,
author = cb # and # karl,
title = {Assessing interactions among neuronal systems using functional neuroimaging},
journal = nnet,
year = {2000},
volume = {13},
pages = {871--882},
keyword = {connectivity,introduction},
pdf = {/spm/doc/papers/buchel_interactions.pdf}
}
@Article{buchel1998,
author = cb # and # oj # and # gr # and # rt # and # cf # karl,
title = {The functional anatomy of attention to visual motion. A functional MRI study},
journal = {Brain},
year = {1998},
volume = {121},
pages = {1281--1294},
keyword = {},
url = {http://brain.oxfordjournals.org/cgi/reprint/121/7/1281}
}
@Article{balloon,
author = karl # and # am # and # rt # and # cjp,
title = {Nonlinear responses in f{MRI}: The {B}alloon model, {V}olterra kernels and other hemodynamics},
journal = ni,
year = {2000},
volume = {12},
pages = {466--477},
keyword = {nonlinear,fMRI,dynamical},
pdf = {/spm/doc/papers/karl_nonlinear.pdf}
}
@Article{learning_effcon,
author = cb # and # {J.T. Coull} # and # karl,
title = {The predictive value of changes in effective connectivity for human learning},
journal = sc,
year = {1999},
pages = {1538--1541},
keyword = {connectivity, fMRI},
pdf = {/spm/doc/papers/cb_predictive.pdf}
}
@Article{ashburner99a,
author = john # and # karl,
title = {Nonlinear Spatial Normalization using Basis Functions},
journal = hbm,
volume = {7},
number = {4},
pages = {254--266},
year = {1999},
keyword = {spatial,nonlinear,normalisation,MRI},
pdf = {/spm/doc/papers/john_nonlinear.pdf}
}
@Article{ashburner99b,
author = john # and # ja # and # karl,
title = {High-Dimensional Nonlinear Image Registration using Symmetric Priors},
journal = ni,
volume = {9},
pages = {619--628},
year = {1999},
keyword = {spatial,nonlinear,Bayesian,registration,MRI},
pdf = {/spm/doc/papers/john_high_dim.pdf}
}
@InCollection{ashburner99bw,
author = john # and # karl,
title = {Spatial Normalization},
editor = {A.W. Toga},
booktitle = {{B}rain {W}arping},
pages = {27--44},
publisher = {Academic Press},
year = {1999},
keyword = {spatial,normalisation,MRI}
}
@Article{multi_conj,
author = karl # and # aph # and # cjp # and # cb # and # kjw,
title = {Multisubject f{MRI} Studies and Conjunction Analyses},
journal = ni,
year = {1999},
volume = {10},
pages = {385--396},
keyword = {group, conjunction, fMRI},
pdf = {/spm/doc/papers/karl_multisubject.pdf}
}
@Article{kiebel99,
author = sjk # and # jbp # and # karl # and # aph # and # kjw,
title = {Robust Smoothness Estimation in Statistical Parametric Maps Using Standardized Residuals from the General Linear Model},
journal = ni,
year = {1999},
volume = {10},
pages = {756--766},
keyword = {smoothness, RFT, GLM},
pdf = {/spm/doc/papers/sjk_robust.pdf}
}
@Article{event_royal,
author = oj # and # rnah,
title = {Event-related functional magnetic resonance imaging: modelling, inference and optimization},
journal = ptrs,
year = {1999},
volume = {354},
pages = {1215--1228},
keyword = {event-related,fMRI,design}
}
@Article{event_rfx,
author = {B. A. Strange and C.M. Portas} # and # rd # and # aph # and # karl,
title = {Random effects analyses for event-related f{MRI}},
journal = ni,
year = {1999},
volume = {9},
pages = {36},
keyword = {RFX,event-related,fMRI}
}
@Article{event2,
author = karl # and # {E. Zarahn} # and # oj # and # rnah # and # {A.M. Dale},
title = {Stochastic designs in event-related f{MRI}},
journal = ni,
year = {1999},
volume = {10},
pages = {607--619},
keyword = {event-related,fMRI,design},
pdf = {/spm/doc/papers/karl_stochastic.pdf}
}
@Article{constitute,
author = karl # and # aph # and # kjw,
title = {How Many subjects constitute a study ?},
journal = ni,
year = {1999},
volume = {10},
pages = {1--5},
keyword = {group, design},
pdf = {/spm/doc/papers/karl_how_many.pdf}
}
@Article{kalman_effcon,
author = cb # and # karl,
title = {Dynamic Changes in Effective Connectivity Characterized by Variable Parameter Regression and {K}alman Filtering},
journal = hbm,
volume = {6},
number = {5},
year = {1998},
pages = {403--408},
keyword = {connectivity, fMRI},
pdf = {/spm/doc/papers/cb_kalman.pdf}
}
@Article{parametric_fmri,
author = cb # and # aph # and # gr # and # karl,
title = {Characterizing stimulus-response functions using nonlinear regressors in parametric f{MRI} experiments},
journal = ni,
year = {1998},
volume = {8},
pages = {140--148},
keyword = {nonlinear, parametric, fMRI},
pdf = {/spm/doc/papers/cb_characterizing.pdf}
}
@Article{ashburner98b,
author = john # and # ch # and # rsjf # and # {I. Johnsrude} # and # cjp # and # karl,
title = {Identifying Global Anatomical Differences: Deformation-Based Morphometry},
journal = hbm,
volume = {6},
number = {5},
pages = {348--357},
year = {1998},
keyword = {spatial,normalisation,MRI},
pdf = {/spm/doc/papers/john_deformation.pdf}
}
@Article{ashburner98c,
author = john # and # karl,
title = {{MRI} Sensitivity Correction and Tissue Classification},
journal = ni,
pages = {S107},
volume = {7},
number = {4},
year = {1998},
keyword = {spatial,MRI}
}
@Article{ashburner98e,
author = john # and # karl,
title = {High-Dimensional Nonlinear Image Registration},
journal = ni,
pages = {S737},
volume = {7},
number = {4},
year = {1998},
keyword = {spatial,registration,MRI}
}
@InProceedings{holmes_rfx,
author = aph # and # karl,
title = {Generalisability, Random Effects and Population Inference},
booktitle = ni,
pages = {S754},
year = {1998},
volume = {7},
keyword = {group, RFX},
pdf = {/spm/doc/papers/aph_rfx.pdf}
}
@InCollection{designing,
author = karl # and # cjp # and # cb,
title = {Designing Activation Experiments.},
booktitle = {Positron Emission Tomography: A Critical Assessment of Recent Trends},
publisher = {Kluwer Academic},
year = {1998},
editor = {B. Gulyas and H.W. Miller-Gartner},
keyword = {design,introduction}
}
@Article{event3,
author = karl # and # oj # and # gr # and # rt,
title = {Non-linear event-related responses in f{MRI}},
journal = mrm,
year = {1998},
volume = {39},
pages = {41--52},
keyword = {nonlinear, event-related, fMRI}
}
@Article{event4,
author = karl # and # {P. Fletcher} # and # oj # and # aph # and # {M.D. Rugg} # and # rt,
title = {Event-related f{MRI}: characterizing differential responses},
journal = ni,
year = {1998},
volume = {7},
pages = {30--40},
keyword = {event-related,fMRI},
pdf = {/spm/doc/papers/karl_event_related.pdf}
}
@Article{ica1,
author = karl,
title = {Modes or models: a critique on independent component analysis for f{MRI}},
journal = tcs,
year = {1998},
volume = {2},
pages = {373--374},
keyword = {connectivity},
pdf = {/spm/doc/papers/karl_modes.pdf}
}
@Article{principles,
author = karl,
title = {Imaging Neuroscience: principles or maps?},
journal = pnas,
year = {1998},
volume = {95},
pages = {796--802},
keyword = {introduction, connectivity},
pdf = {/spm/doc/papers/karl_principles.pdf}
}
@Article{ppi,
author = karl # and # cb # and # {G.R. Fink} # and # {J. Morris and E. Rolls} # and # rd,
title = {Psychophysiological and modulatory interactions in Neuroimaging},
journal = ni,
year = {1997},
volume = {6},
pages = {218--229},
keyword = {connectivity, fMRI, PPI},
doi = {10.1006/nimg.1997.0291},
pdf = {/spm/doc/papers/karl_ppi.pdf}
}
@Article{fmri_average,
author = cb # and # rt # and # karl,
title = {Lateral geniculate activations can be detected using intersubject averaging and f{MRI}},
journal = mrm,
year = {1997},
volume = {38},
number = {691--694},
keyword = {fMRI}
}
@Article{ashburner97bir,
author = john # and # karl,
title = {The role of registration and spatial normalization in detecting activations in functional imaging},
journal = {{C}linical {MRI}/{D}evelopments in {MR}},
pages = {26--28},
volume = {7},
number = {1},
year = {1997},
keyword = {spatial,registration,MRI},
ps = {/spm/doc/papers/John_Ashburner/bir.ps}
}
@Article{ashburner97a,
author = john # and # karl,
title = {Multimodal Image Coregistration and Partitioning - a Unified Framework},
journal = ni,
pages = {209--217},
volume = {6},
number = {3},
year = {1997},
keyword = {spatial,registration,MRI,PET},
pdf = {/spm/doc/papers/john_multimodal.pdf}
}
@Article{ashburner97b,
author = john # and # {P. Neelin and D. L. Collins and A. C. Evans} # and # karl,
title = {Incorporating Prior Knowledge into Image Registration},
journal = ni,
pages = {344--352},
volume = {6},
year = {1997},
keyword = {Bayesian, spatial,registration,MRI},
pdf = {/spm/doc/papers/john_incorp.pdf}
}
@Article{kiebel97,
author = sjk # and # john # and # jbp # and # karl,
title = {{MRI} and {PET} Coregistration - A Cross Validation of Statistical Parametric Mapping and Automated Image Registration},
journal = ni,
volume = {5},
pages = {271--279},
year = {1997},
keyword = {PET, MRI, registration},
pdf = {/spm/doc/papers/sjk_coreg.pdf}
}
@Article{friston97a,
author = karl,
title = {Testing for anatomically specified regional effects},
journal = hbm,
year = {1997},
volume = {5},
pages = {133--136},
keyword = {RFT, PET, fMRI},
pdf = {/spm/doc/papers/karl_anat_specified.pdf}
}
@Article{price97,
author = cjp # and # karl,
title = {Cognitive Conjunction: A New Approach to Brain Activation Experiments},
journal = ni,
year = {1997},
volume = {5},
pages = {261--270},
keyword = {conjunction, design},
pdf = {/spm/doc/papers/cjp_cognitive.pdf}
}
@InCollection{ch2,
author = karl,
title = {Analyzing brain images: Principles and overview},
booktitle = {{H}uman {B}rain {F}unction},
publisher = {Academic Press USA},
year = {1997},
pages = {25--41},
editor = rsjf # and # karl # and # cf # and # rd # and # {J.C. Mazziotta},
keyword = {introduction, design},
pdf = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf1/Ch1.pdf}
}
@InCollection{ashburner97hbf,
author = john # and # karl,
title = {Spatial transformation of images},
booktitle = {{H}uman {B}rain {F}unction},
publisher = {Academic Press USA},
year = {1997},
pages = {43--58},
editor = rsjf # and # karl # and # cf # and # rd # and # {J.C. Mazziotta},
keyword = {spatial,registration,normalisation,MRI,PET,fMRI},
pdf = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf1/Ch2.pdf}
}
@InCollection{ch4,
author = aph # and # jbp # and # karl,
title = {Characterizing brain images with the general linear model},
booktitle = {{H}uman {B}rain {F}unction},
publisher = {Academic Press USA},
year = {1997},
pages = {59--84},
editor = rsjf # and # karl # and # cf # and # rd # and # {J.C. Mazziotta},
keyword = {GLM,introduction,PET,fMRI},
pdf = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf1/Ch3.pdf}
}
@InCollection{ch5,
author = jbp # and # aph # and # kjw # and # karl,
title = {Making statistical inferences},
booktitle = {{H}uman {B}rain {F}unction},
publisher = {Academic Press USA},
year = {1997},
pages = {85--106},
editor = rsjf # and # karl # and # cf # and # rd # and # {J.C. Mazziotta},
keyword = {RFT,GLM,introduction},
pdf = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf1/Ch4.pdf}
}
@InCollection{ch6,
author = karl,
title = {Characterizing distributed functional systems},
booktitle = {{H}uman {B}rain {F}unction},
publisher = {Academic Press USA},
year = {1997},
pages = {107--126},
editor = rsjf # and # karl # and # cf # and # rd # and # {J.C. Mazziotta},
keyword = {connectivity,introduction},
pdf = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf1/Ch5.pdf}
}
@InCollection{ch7,
author = cb # and # karl,
title = {Characterizing functional integration},
booktitle = {{H}uman {B}rain {F}unction},
publisher = {Academic Press USA},
year = {1997},
pages = {127--140},
editor = rsjf # and # karl # and # cf # and # rd # and # {J.C. Mazziotta},
keyword = {connectivity,introduction},
pdf = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf1/Ch6.pdf}
}
@InCollection{ch8,
author = karl # and # cjp # and # cb # and # rsjf,
title = {A Taxonomy of Study Design},
booktitle = {{H}uman {B}rain {F}unction},
publisher = {Academic Press USA},
year = {1997},
pages = {141--159},
editor = rsjf # and # karl # and # cf # and # rd # and # {J.C. Mazziotta},
keyword = {design,introduction},
pdf = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf1/Ch7.pdf}
}
@Article{trans2,
author = karl # and # {K.M. Stephan} # and # rsjf,
title = {Transient phase-locking and dynamic correlations: Are they the same thing?},
journal = hbm,
year = {1997},
volume = {5},
pages = {48--57},
keyword = {connectivity},
pdf = {/spm/doc/papers/karl_phase.pdf}
}
@Article{event1,
author = oj # and # rt # and # karl,
title = {Event-related f{MRI}},
journal = hbm,
year = {1997},
volume = {5},
pages = {243--248},
keyword = {event-related,fMRI},
pdf = {/spm/doc/papers/oj_event.pdf}
}
@Article{tics97,
author = karl,
title = {Imaging Cognitive Anatomy},
journal = tcs,
year = {1997},
volume = {1},
pages = {21--27},
keyword = {introduction},
pdf = {/spm/doc/papers/karl_imaging.pdf}
}
@Article{buchel97,
author = cb # and # karl,
title = {Modulation of connectivity in visual pathways by attention: Cortical interactions evaluated with structural equation modelling and f{MRI}},
journal = cc,
year = {1997},
volume = {7},
pages = {768--778},
keyword = {connectivity,fMRI},
pdf = {/spm/doc/papers/cb_sem.pdf}
}
@Book{hbf,
editor = rsjf # and # karl # and # cf # and # rd # and # {J.C. Mazziotta},
title = {{H}uman {B}rain {F}unction},
publisher = {Academic Press USA},
year = {1997},
keyword = {introduction},
url = {http://www.fil.ion.ucl.ac.uk/spm/doc/books/hbf1/}
}
@Article{code1,
author = karl,
title = {Another neural code ?},
journal = ni,
year = {1997},
volume = {5},
pages = {213--220},
keyword = {MEG, connectivity},
pdf = {/spm/doc/papers/karl_neural_code.pdf}
}
@Article{parametric_pet,
author = cb # and # {R.J.S. Wise and C.J. Mummery} # and # jbp # and # karl,
title = {Nonlinear regression in parametric activation studies},
journal = ni,
year = {1996},
volume = {4},
pages = {60--66},
keyword = {nonlinear, parametric, PET},
pdf = {/spm/doc/papers/cb_nonlinear.pdf}
}
@InCollection{spm_tutorial,
author = karl,
title = {Statistical Parametric Mapping and Other Analysis of Functional Imaging Data},
booktitle = {Brain Mapping: The Methods},
pages = {363--385},
publisher = {Academic Press},
year = {1996},
keywork = {introduction, GLM, RFT}
}
@InProceedings{ashburner96,
author = john # and # {J. Haslam and C. Taylor and V. J. Cunningham and T. Jones},
title = {A Cluster Analysis Approach for the Characterization of Dynamic {PET} Data},
booktitle = {{Q}uantification of {B}rain {F}unction Using {PET}},
editor = {R. Myers and V. Cunningham and B. Dale and T. Jones},
publisher = {London, Academic Press},
year = {1996},
pages = {301--306},
keyword = {clustering,PET}
}
@Article{friston96a,
author = karl # and # {S. Williams and R. Howard} # and # rsjf # and # rt,
title = {Movement-Related Effects in {fMRI} Time-Series},
journal = mrm,
year = {1996},
volume = {35},
pages = {346--355},
keyword = {registration, spatial,fMRI},
url = {/spm/doc/papers/fMRI_1/welcome.html}
}
@Article{holmes96,
author = aph # and # {R. C. Blair and J.D.G. Watson and I. Ford},
title = {Non-Parametric Analysis of Statistic Images From Functional Mapping Experiments},
journal = jcbfm,
volume = {16},
pages = {7--22},
year = {1996},
keyword = {nonparametric, PET},
}
@Article{worsley96b,
author = kjw # and # {S. Marrett and P. Neelin and A. C. Vandal} # and # karl # and # {A. C. Evans},
title = {A unified statistical approach for determining significant voxels in images of cerebral activation},
journal = hbm,
volume = {4},
pages = {58--73},
year = {1996},
keyword = {RFT}
}
@Article{multivarEEG,
author = karl # and # {Klaus M. Stephan and J.D. Heather} # and # cf # and # {A.A. Ioannides and L.C. Liu and M.D. Rugg and J. Vieth and H. Keber and K. Hunter} # and # rsjf,
title = {A Multivariate Analysis of Evoked Responses in {EEG} and {MEG} data},
journal = ni,
year = {1996},
volume = {3},
pages = {167--174},
keyword = {connectivity, multivariate, EEG, MEG},
pdf = {/spm/doc/papers/karl_multivariate.pdf}
}
@Article{friston96b,
author = karl # and # jbp # and # aph # and # cf # and # rsjf,
title = {A multivariate analysis of {PET} activation studies},
journal = hbm,
year = {1996},
volume = {4},
pages = {140--151},
keyword = {connectivity, multivariate, PET},
pdf = {/spm/doc/papers/karl_multivariate_pet.pdf}
}
@Article{cog1,
author = karl # and # cjp # and # {P. Fletcher and C. Moore} # and # and # rsjf # and # rd,
title = {The trouble with cognitive subtraction},
journal = ni,
year = {1996},
volume = {4},
pages = {97--104},
keyword = {design, introduction},
pdf = {/spm/doc/papers/karl_trouble.pdf}
}
@Article{mds1,
author = karl # and # cf # and # {P. Fletcher and P.F. Liddle} # and # rsjf,
title = {Functional topography: multidimensional scaling and functional connectivity in the brain},
journal = cc,
year = {1996},
volume = {6},
pages = {156--164},
keyword = {connectivity},
url = {/spm/doc/papers/PET_2/welcome.html}
}
@Article{wright_vbm,
author = {I.C. Wright and P.K. McGuire} # and # jbp # and # {J.M. Travere and R.M. Murray} # and # cf # and # rsjf # and # karl,
title = {A voxel-based method for the statistical analysis of gray and white matter density applied to schizophrenia},
journal = ni,
year = {1995},
volume = {2},
pages = {244--252},
keyword = {spatial,normalisation,VBM,MRI}
}
@Article{karl_spatial_reg,
author = karl # and # john # and # cf # and # jbp # and # {J. D. Heather} # and # rsjf,
title = {Spatial Registration and Normalization of Images},
journal = hbm,
year = {1995},
volume = {2},
pages = {165--189},
keyword = {normalisation,registration},
url = {/spm/doc/papers/SPM_1/welcome.html}
}
@Article{spm_ontology,
author = karl,
title = {Statistical Parametric Mapping: Ontology and Current Issues},
journal = jcbfm,
year = {1995},
volume = {15},
pages = {361--370},
keyword = {introduction,design}
}
@Article{friston95b,
author = karl # and # aph # and # jbp # and # {P. J. Grasby and S. C. R. Williams} # and # rsjf # and # rt,
title = {Analysis of f{MRI} Time Series Revisited},
journal = ni,
year = {1995},
volume = {2},
pages = {45--53},
keyword = {fMRI,autocorrelation,nonsphericity},
pdf = {/spm/doc/papers/karl_revisited.pdf}
}
@Article{friston95c,
author = karl # and # aph # and # kjw # and # jbp # and # cf # and # rsjf,
title = {Statistical Parametric Maps in Functional Imaging: A General Linear Approach},
journal = hbm,
year = {1995},
volume = {2},
pages = {189--210},
keyword = {GLM,RFT},
url = {/spm/doc/papers/SPM_3/welcome.html}
}
@Article{friston95a,
author = karl # and # cf # and # rsjf # and # rt,
title = {Characterizing Dynamic Brain Responses with f{MRI}: A multivariate Approach},
journal = ni,
year = {1995},
volume = {2},
pages = {166--172},
keyword = {connectivity,dynamical,multivariate,fMRI},
pdf = {/spm/doc/papers/karl_dyn_multivariate.pdf}
}
@Article{poline95,
author = jbp # and # karl # and # kjw # and # rsjf,
title = {Estimating Smoothness in Statistical Parametric Maps: Confidence Intervals on p-Values},
journal = jcat,
pages = {788--796},
volume = {19},
number = {5},
year = {1995},
keyword = {smoothness,RFT},
url = {/spm/doc/papers/SPM_3/welcome.html}
}
@Article{worsley95,
author = kjw # and # karl,
title = {Analysis of f{MRI} Time-Series Revisited - Again},
journal = ni,
year = {1995},
volume = {2},
pages = {173--181},
keyword = {fMRI,autocorrelation,nonsphericity},
pdf = {/spm/doc/papers/kjw_revisited_again.pdf}
}
@Article{effcon_v1v2,
author = karl # and # {L.G. Ungerleider} # and # pj # and # rt,
title = {Characterizing modulatory interactions between {V1} and {V2} in human cortex with f{MRI}},
journal = hbm,
year = {1995},
volume = {2},
pages = {211--224},
keyword = {connectivity, fMRI}
}
@Article{friston_levels,
author = karl # and # aph # and # jbp # and # cjp # and # cf,
title = {Detecting Activations in {PET} and f{MRI}: Levels of Inference and Power},
journal = ni,
year = {1995},
volume = {40},
pages = {223--235},
keyword = {RFT, PET, fMRI},
pdf = {/spm/doc/papers/karl_detecting.pdf}
}
@Article{func1,
author = karl,
title = {Functional and effective connectivity in neuroimaging: A synthesis},
journal = hbm,
year = {1995},
volume = {2},
pages = {56--78},
keyword = {connectivity}
}
@Article{hemo1,
author = karl # and # cf # and # rt # and # rsjf,
title = {Characterizing evoked hemodynamics with f{MRI}},
journal = ni,
year = {1995},
volume = {2},
pages = {157--165},
keyword = {fMRI,event-related},
pdf = {/spm/doc/papers/karl_evoked.pdf}
}
@Article{friston94,
author = karl # and # kjw # and # rsjf # and # jcm # and # {A.C. Evans},
title = {Assessing the Significance of Focal Activations Using their Spatial Extent},
journal = hbm,
year = {1994},
volume = {1},
pages = {214--220},
keyword = {RFT},
url = {/spm/doc/papers/SPM_2/welcome.html}
}
@Article{friston94b,
author = karl # and # pj # and # rt,
title = {Analysis of Functional {MRI} Time-Series},
journal = hbm,
year = {1994},
volume = {1},
pages = {153--171},
keyword = {fMRI, autocorrelation,nonsphericity},
url = {/spm/doc/papers/fMRI_4/}
}
@PhDThesis{holmes94,
author = aph,
title = {Statistical Issues in Functional Brain Mapping},
school = {University of Glasgow},
year = {1994},
month = {December},
keyword = {RFT, PET, GLM},
url = {/spm/doc/theses/andrew/}
}
@Article{friston93,
author = karl # and # cf # and # {F.P. Liddle} # and # rsjf,
title = {Functional connectivity: The principal-component analysis of large ({PET}) data sets},
journal = jcbfm,
year = {1993},
volume = {13},
pages = {5--14},
keyword = {connectivity,PET}
}
@Article{pca1,
author = karl # and # cf # and # rsjf,
title = {Principal component analysis learning algorithms: A neurobiological analysis},
journal = {Proc R Soc B},
year = {1993},
volume = {254},
pages = {47--54},
keyword = {connectivity}
}
@Article{effconn1,
author = karl # and # cf # and # rsjf,
title = {Time-dependent changes in effective connectivity measured with {PET}},
journal = hbm,
year = {1993},
volume = {1},
pages = {69--79},
keyword = {connectivity, PET}
}
@Article{price_parametric,
author = cjp # and # {R. Wise and S. Ramsay} # and # karl # and # {D. Howard and K. Patterson} # and # rsjf,
title = {Regional response differences withing the human
auditory cortex when listening to words},
journal = nl,
year = {1992},
volume = {11},
pages = {179--182},
keyword = {parametric, fMRI}
}
@Article{factorial1,
author = karl # and # cf # and # {R.E. Passingham and P. Liddle} # and # rsjf,
title = {Motor practice and neurophysiological adaptation in the cerebellum: a positron tomography study},
journal = {Proc. Royal Soc. Lond. Series B},
year = {1992},
volume = {248},
pages = {223--228},
keyword = {PET}
}
@Article{friston91,
author = karl # and # cf # and # {P. F. Liddle} # and # rsjf,
title = {Plastic transformation of {PET} images},
journal = jcat,
year = {1991},
volume = {15},
pages = {634--639},
keyword = {PET, normalisation}
}
@Article{karl_pet_sig,
author = karl # and # cf # and # {P.F. Liddle} # and # rsjf,
title = {Comparing functional ({PET}) images: The assessment of significant change},
journal = jcbfm,
year = {1991},
volume = {11},
pages = {690--699},
keyword = {PET,RFT}
}
@Article{spm1,
author = karl # and # cf # and # {P.F. Liddle} # and # rd # and # {A.A. Lammertsma} # and # rsjf,
title = {The relationship between global and local changes in {PET} scans},
journal = jcbfm,
year = {1990},
volume = {10},
pages = {458--466},
keyword = {PET}
}
@Article{direct,
author = karl # and # {R.E. Passingham and J.G. Nutt and J.D. Heather and G.V. Sawle} # and # rsjf,
title = {Localisation in {PET} images: direct fitting of the intercommissural ({AC-PC}) line},
journal = jcbfm,
year = {1989},
volume = {9},
pages = {690--695},
keyword = {spatial, PET, normalisation}
}
@TechReport{rnah_anova,
author = rnah # and # will,
title = {{ANOVA}s and {SPM}},
institution = wdin,
year = 2003,
keyword = {ANOVA},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/rik_anova.pdf}
}
@TechReport{spm99_manual,
author = {D. Veltman} # and # ch,
title = {{SPM99} Manual},
institution = wdin,
year = 2000,
keyword = {introduction},
pdf = {/spm/doc/papers/spm99_manual.pdf}
}
@InProceedings{ rnah_latency_hbm,
author = rnah # and # {M.D. Rugg},
title = {Effects of stimulus repetition on latency of {BOLD} impulse response},
booktitle = ni,
pages = {683},
year = {2001},
volume = {13},
keyword = {},
pdf = {/spm/doc/papers/rnah_latency_hbm.pdf}
}
@InProceedings{ rnah_multivar,
author = rnah # and # ja # and # karl,
title = {Multivariate {SPM}: Application to basis function characterisations of event-related f{MRI} responses},
booktitle = ni,
pages = {468},
year = {2000},
volume = {11},
keyword = {fMRI, event-related, multivariate},
pdf = {/spm/doc/papers/rnah_multivar.pdf}
}
@InProceedings{rnah_slicetime,
author = rnah # and # cb # and # oj # and # karl,
title = {The slice-timing problem in event-related f{MRI}},
booktitle = ni,
pages = {125},
year = {1999},
volume = {9},
keyword = {fMRI},
pdf = {/spm/doc/papers/rnah_slicetime.pdf}
}
@Article{ rnah_mm,
author = rnah # and # {Y. Goshen-Gottstein and T. Ganel and L.J. Otten and A. Quayle and M.D. Rugg},
title = {Electrophysiological and hemodynamic correlates of face perception, recognition and priming},
journal = cc,
year = {2003},
volume = {13},
pages = {793-805},
keyword = {fMRI, EEG},
pdf = {/spm/doc/papers/cc-henson-2003.pdf}
}
@InProceedings{rnah_source,
author = rnah # and # jm # and # karl # and # {S.Hassel} # and # {A. Hillebrand} # and # gr # and # {K.D. Singh},
title = {Distributed source localisation of the {M170} using multiple constraints},
booktitle = hbmc,
year = {2005},
keyword = {MEG},
pdf = {/spm/doc/papers/hbm05-source.pdf}
}
@InProceedings{rnah_time,
author = rnah # and # sjk # and # jk # and # karl # and # {A. Hillebrand} # and # gr # and # {K.D. Singh},
title = {Time-frequency {SPM}s for {MEG} data on face perception: power changes and phase-locking},
booktitle = hbmc,
year = {2005},
keyword = {MEG},
pdf = {/spm/doc/papers/hbm05-timefreq.pdf}
}
@Article{will_bds,
author = will # and # {Z. Ghahramani} # and # karl,
title = {Bilinear {D}ynamical {S}ystems},
journal = {Phil Trans R Soc B},
year = 2005,
volume = {360},
number = {1457},
pages = {983--993},
doi = { 10.1098/rstb.2005.1642},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/penny_bds.pdf},
keyword = {Dynamic,Markov,fMRI},
}
@Article{vb2,
author = will # and # nelson # and # karl,
title = {Bayesian f{MRI} time series analysis with spatial priors},
journal = ni,
year = 2005,
volume = 24,
number = 2,
pages = {350-362},
doi = {10.1016/j.neuroimage.2004.08.034},
pdf = {http://www.fil.ion.ucl.ac.uk/~wpenny/publications/vb2_2005.pdf},
keyword = {Spatial,fMRI},
}
@Article{karl_conj_revisit,
author = karl # and # will # and # deg,
title = {Conjunction revisited},
journal = ni,
year = 2005,
volume = 25,
number = 3,
pages = {661--667},
doi = {10.1016/j.neuroimage.2005.01.013},
keyword = {conjunction},
pdf = { /spm/doc/papers/karl_conj_revisit.pdf }
}
@InProceedings{karl_ppm_conf,
author = karl # and # will,
title = {Bayesian Inference and Posterior Probability Maps},
booktitle = {Proceedings of the 9th International Conference on Neural Information Processing (ICONIP'02)},
year = 2002,
pages = {413-417},
keyword = {PPM}
}
@TechReport{vb3,
author = will # and # gf,
title = {Bayesian analysis of single-subject {fMRI}: {SPM} implementation},
institution = {Wellcome Department of Imaging Neuroscience},
year = 2005,
keyword = {PPM,Bayesian,fMRI},
pdf = { /spm/doc/papers/vb3.pdf }
}
@InProceedings{vb5,
author = will # and # gf,
title = {Bayesian analysis of f{MRI} data with spatial priors},
booktitle = {Proceedings of the Joint Statistical Meeting (JSM), Section on Statistical Graphics [CDROM]},
note = {Alexandria, VA: American Statistical Association.},
year = 2005,
keyword = {PPM,Bayesian,fMRI},
pdf = { /spm/doc/papers/vb5.pdf }
}
@Article{gf_sparse_vb,
author = gf # and # will,
title = {Bayesian f{MRI} data analysis with sparse spatial basis function priors},
journal = ni,
year = {2007},
volume = {34},
number = {3},
pages = {1108--1125},
keyword = {PPM,Bayesian,fMRI,GLM,spatial,hierarchical},
pdf = { /spm/doc/papers/gf_sparse_vb.pdf },
doi = {10.1016/j.neuroimage.2006.10.005}
}
@Article{tom_valid,
author = tom # and # {M. Brett} # and # ja # and # {T. Wager} # and # jbp,
title = {Valid conjunction inference with the minimum statistic},
journal = ni,
year = 2005,
volume = 25,
pages = {653-660},
keyword = {conjunction},
pdf = { /spm/doc/papers/NicholsBrett.pdf }
}
@Article{tom_rft_meg,
author = {D. Pantazis} # and # tom # and # {S. Baillet and R.M. Leahy},
title = {A comparison of random field theory and permutation methods for the statistical analysis of MEG data. },
journal = ni,
year = 2005,
volume = 25,
pages = {383-394},
keyword = {RFT,MEG,nonparametric},
pdf = { /spm/doc/papers/PantazisNI.pdf }
}
@Article{tom_combining,
author = {S. Hayasaka} # and # tom,
title = {Combining voxel intensity and cluster extent with permutation test framework},
journal = ni,
year = 2004,
volume = 23,
pages = {54-63},
keyword = {nonparametric,cluster},
pdf = { /spm/doc/papers/HayasakaNichols_ClusComb.pdf }
}
@Article{tom_nonstat,
author = {S. Hayasaka and K.L. Phan and I. Liberzon} # and # kjw # and # tom,
title = {Non-Stationary Cluster Size Inference with Random Field and Permutation Methods},
journal = ni,
year = 2004,
volume = 22,
pages = {676--687},
keyword = {Cluster,RFT,nonparametric},
pdf = { /spm/doc/papers/HayasakaNichols_NonstCls.pdf }
}
@Article{tom_cluster,
author = {S. Hayasaka} # and # tom,
title = {Validating cluster size inference: random field and permutation methods},
journal = ni,
year = 2003,
volume = 20,
pages = {2343--2356},
keyword = {Cluster,RFT,nonparametric},
pdf = { /spm/doc/papers/HayasakaNichols_StaClus.pdf }
}
@Article{tom_fwe,
author = tom # and # {S. Hayasaka},
title = {Controlling the Familywise Error Rate in Functional Neuroimaging: A Comparative Review},
journal = {Statistical Methods in Medical Research},
year = 2003,
volume = 12,
pages = {419--446},
keyword = {RFT,nonparametric},
pdf = { /spm/doc/papers/NicholsHayasaka.pdf }
}
@Article{tom_diag,
author = {W.L. Luo and } # tom,
title = {Diagnosis and Exploration of Massively Univariate Neuroimaging Models},
journal = ni,
year = 2003,
volume = 19,
pages = {1014--1032},
keyword = {GLM},
pdf = { /spm/doc/papers/LuoNichols.pdf }
}
@Article{tom_optimal,
author = {T.D. Wager and } # tom,
title = {Optimization of Experimental Design in fMRI: A General Framework Using a Genetic Algorithm},
journal = ni,
year = 2003,
volume = 18,
pages = {293--209},
keyword = {design},
pdf = { /spm/doc/papers/WagerNichols.pdf }
}
@Article{tom_PET,
author = tom # { and J. Qi and A. Asma and R.L. Leahy},
title = {Spatiotemporal Reconstruction of List Mode {PET} Data},
journal = ieeetmi,
year = 2002,
volume = 21,
pages = {396--404},
keyword = {PET},
pdf = { /spm/doc/papers/NicholsQiAsmaLeahy.pdf }
}
@Article{tom_FDR,
author = {C.R. Genovese and N. Lazar and } # tom,
title = {Thresholding of Statistical Maps in Functional Neuroimaging Using the False Discovery Rate},
journal = ni,
year = 2002,
pages = {870--878},
keyword = {FDR},
pdf = { /spm/doc/papers/GLN.pdf }
}
@Article{tom_nonpar ,
author = tom # and # aph,
title = {Nonparametric Permutation Tests for Functional Neuroimaging: {A} Primer with Examples},
journal = hbm,
year = 2002,
volume = 15,
pages = {1-25},
keyword = {nonparametric},
pdf = { /spm/doc/papers/NicholsHolmes.pdf }
}
@Article{tom_limits1,
author = {K.M. Petersson and } # tom # and # jbp # and # aph,
title = {Statistical limitations in functional neuroimaging {I}. {N}on-inferential methods and statistical models},
journal = ptrs,
year = 1999,
volume = 354,
pages = {1239--1260},
keyword = {introduction},
pdf = { /spm/doc/papers/Petersson_SL1.pdf }
}
@Article{tom_limits2,
author = {K.M. Petersson and } # tom # and # jbp # and # aph,
title = {Statistical limitations in functional neuroimaging {II}. {S}ignal detection and statistical inference},
journal = ptrs,
year = 1999,
volume = 354,
pages = {1261--1281},
keyword = {introduction},
pdf = { /spm/doc/papers/Petersson_SL2.pdf }
}
@Article{karl_induced,
author = karl # and # rnah # and # cp # and # jm,
title = {Bayesian estimation of evoked and induced responses},
journal = hbm,
year = 2005,
volume = 27,
pages = {722--735},
keywords = {EEG,MEG},
doi = {10.1002/hbm.20214}
}
@Article{od_dcm_erp,
author = od # and # sjk # and # lee # and # jm # and # jk # and # karl,
title = {Dynamic Causal Modelling of Evoked Responses in {EEG} and {MEG}},
journal = ni,
year = 2006,
volume = 30,
pages = {1255--1272},
keyword = {DCM,EEG,MEG},
doi = {doi:10.1016/j.neuroimage.2005.10.045 },
pdf = { /spm/doc/papers/od_dcm_erp.pdf }
}
@Article{jm_multiple,
author = jm # and # cp # and # will # and # {M. Rugg} # and # karl,
title = {MEG source localization under multiple constraints: an extended {B}ayesian framework},
journal = ni,
year = 2006,
volume = 30,
number = 3,
pages = {753--767},
keyword = {EEG,MEG},
doi = {10.1016/j.neuroimage.2005.10.037 },
pdf = { /spm/doc/papers/jm_multiple.pdf }
}
@Article{sjk_dcm_erp,
author = sjk # and # od # and # karl,
title = {Dynamic Causal Modelling of Evoked Responses in {EEG/MEG} with lead-field parameterization},
journal = ni,
year = 2006,
volume = 30,
pages = {1273--1284},
keyword = {EEG,MEG,DCM},
doi = {doi:10.1016/j.neuroimage.2005.12.055},
pdf = {/spm/doc/papers/sjk_dcm_erp.pdf}
}
@TechReport{klaas_dcm_objfcn,
author = klaas # and # karl # and # will,
title = {Computing the objective function in {DCM}},
institution = {Wellcome Department of Imaging Neuroscience, ION, UCL},
year = {2005},
pdf = {/spm/doc/papers/stephan_DCM_ObjFcn_tr05.pdf},
keyword = {DCM}
}
@Article{will_bayes_srglm,
author = will # and # gf # and # nelson,
title = {Bayesian {C}omparison of {S}patially {R}egularised {G}eneral {L}inear {M}odels},
journal = hbm,
year = 2005,
volume = 28,
pages = {275--293},
keyword = {Bayesian,fMRI,PPM,GLM},
doi = {doi:10.1002/hbm.20327},
pdf = { /spm/doc/papers/vb4.pdf }
}
@Article{karl_mixed,
author = karl # and # klaas # and # {T.E. Lund} # and # {A. Morcom} # and # sjk,
title = {Mixed-effects and f{MRI} studies},
journal = ni,
year = 2005,
volume = 24,
pages = {244--252},
keyword = {fMRI,GLM},
pdf = { /spm/doc/papers/karl_mixed.pdf }
}
@Article{james_rft,
author = jk # and # sjk # and # karl,
title = {Applications of random field theory to electrophysiology},
journal = {Neuroscience Letters},
year = 2005,
volume = 374,
pages = {174--178},
}
@Article{rnah_face_rep,
author = rnah # and # {T. Shallice and M.L. Gorno-Tempini} # and # rd,
title = {Face repetition effects in implicit and explicit memory tests as measured by f{MRI}},
journal = {Cerebral Cortex},
year = 2002,
volume = 12,
pages = {178--186},
keyword = {fMRI},
pdf = { /spm/doc/papers/rnah_face_rep.pdf }
}
@Article{sjk_dcm_slicetiming,
author = sjk # and # {S. Kl\"{o}ppel} # and # nw # and # karl,
title = {Dynamic causal modeling: A generative model of slice timing in f{MRI}},
journal = ni,
year = 2007,
volume = 34,
pages = {1487--1496},
doi = {10.1016/j.neuroimage.2006.10.026},
keyword = {fMRI,DCM,sampling},
}
@Article{mg_dcm_repro,
author = mg # and # jk # and # sjk # and # klaas # and # karl,
title = {Dynamic causal modelling of evoked potentials: A reproducibility study},
journal = ni,
year = 2007,
volume = 36,
pages = {571--580},
doi = {10.1016/j.neuroimage.2007.03.014},
pdf = {/spm/doc/papers/Garrido_NeuroImage_36_571_2007.pdf},
keyword = {DCM,EEG,MEG},
}
@Article{sjk_dcm_intrinsic,
author = sjk # and # mg # and # karl,
title = {Dynamic causal modelling of evoked responses: The role of intrinsic connections},
journal = ni,
year = 2007,
volume = 36,
pages = {332--345},
doi = {10.1016/j.neuroimage.2007.02.046},
keyword = {DCM,EEG,MEG},
}
@Article{lee_diffusion,
author = lee # and # will # and # john # and # nelson # and # karl,
title = {Diffusion-based spatial priors for imaging},
journal = ni,
year = 2007,
volume = 38,
pages = {677--695},
doi = {10.1016/j.neuroimage.2007.07.032},
keyword = {fMRI,GLM,spatial},
}
@Article{lee_stochastic,
author = lee # and # od # and # karl,
title = {Stochastic models of neuronal dynamics},
journal = ni,
year = 2005,
volume = 360,
pages = {1075--1091},
doi = {10.1098/rstb.2005.1648},
keyword = {fMRI,GLM,spatial}
}
@Book{spm_book,
editor = karl # and # john # and # sjk # and # tom # and # will,
title = {Statistical Parametric Mapping: The Analysis of Functional Brain Images},
publisher = {Academic Press},
year = {2007},
keyword = {introduction},
url = {http://store.elsevier.com/product.jsp?isbn=9780123725608}
}
@Article{rnah_population_inference,
author = rnah # and # jm # and # {K.D. Singh} # and # gr # and # {A. Hillebrand} # and # karl,
title = {Population-level inferences for distributed MEG source localization under multiple constraints: Application to face-evoked fields},
journal = ni,
year = 2007,
volume = 38,
pages = {422--438},
doi = {10.1016/j.neuroimage.2007.07.026},
keyword = {MEG,REML,group},
pdf = {/spm/doc/papers/rnah_population_inference.pdf}
}
@Article{acm_2state_dcm,
author = acm # and # sjk # and # karl,
title = {Dynamic causal modelling for f{MRI}: A two-state model},
journal = ni,
year = 2008,
volume = 39,
pages = {269--278},
doi = {10.1016/j.neuroimage.2007.08.019},
keyword = {DCM}
}
@Article{klaas_dcm_callosum,
author = klaas # and # will # and # {J.C. Marshall} # and # {G.R. Fink} # and # karl,
title = {Investigating the functional role of Callosal connections with Dynamic Causal Models},
journal = {Ann. N.Y. Acad. Sci.},
year = 2005,
volume = 1064,
pages = {16--36},
doi = {10.1196/annals.1340.008},
keyword = {DCM},
pdf = {/spm/doc/papers/Stephan_AnnNYAcadSci_1064_16_2005.pdf}
}
@Article{klaas_system_theory,
author = klaas,
title = {On the role of general system theory for functional neuroimaging},
journal = {{J}ournal of {A}natomy},
year = 2004,
volume = 205,
pages = {443--470},
keyword = {DCM},
pdf = {/spm/doc/papers/Stephan_JAnat_205_443_2004.pdf}
}
@Article{klaas_dcm_ext,
author = klaas # and # lee # and # sjk # and # od # and # will # and # karl,
title = {Dynamic causal models of neural system dynamics: current state and future extensions},
journal = {{J}ournal of {B}iosciences},
year = 2007,
pages = {129-144},
keyword = {DCM,fMRI},
pdf = {/spm/doc/papers/Stephan_JBiosci_32_129_2007.pdf}
}
@Article{klaas_hemi_inter,
author = klaas # and # {J.C. Marshall} # and # will # and # karl # and # {G.R. Fink},
title = {Interhemispheric integration of visual processing during task-driven lateralization},
journal = jn,
year = 2007,
volume = 27,
pages = {3512--3522},
keyword = {DCM,fMRI},
pdf = {/spm/doc/papers/Stephan_JNeurosci_27_3512_2007.pdf}
}
@Article{klaas_compare_dcm,
author = klaas # and # nw # and # {P.M. Drysdale} # and # {P.A. Robinson} # and # karl,
title = {Comparing hemodynamic models with {DCM}},
journal = ni,
year = 2007,
volume = 38,
pages = {387--401},
doi = {10.1016/j.neuroimage.2007.07.040},
keyword = {DCM,bayesian},
pdf = {/spm/doc/papers/Stephan_NeuroImage_38_387_2007.pdf}
}
@Article{cp_empirical_eeg,
author = cp # and # jm # and # {M.D. Rugg} # and # {P. Maquet} # and # karl,
title = {An empirical {B}ayesian solution to the source reconstruction problem in {EEG}},
journal = ni,
year = 2005,
volume = 24,
pages = {997--1011},
doi = {10.1016/j.neuroimage.2004.10.030},
keyword = {EEG,bayesian}
}
@Article{fimag_scholarpedia,
author = will # and # karl,
title = {Functional Imaging},
journal = {Scholarpedia},
year = 2007,
volume = {2},
number = {5},
pages = {1478},
keyword = {fMRI, EEG, MEG, introduction},
url = {http://www.scholarpedia.org/article/Functional_Imaging}
}
@Article{spm_sholarpedia,
author = gf # and # karl,
title = {Statistical Parametric Mapping},
journal = {Scholarpedia},
year = 2008,
volume = {3},
number = {4},
pages = {6232},
keyword = {fMRI, introduction},
url = {http://www.scholarpedia.org/article/Statistical_parametric_mapping_(SPM)}
}
@Article{lee_diffusion2,
author = lee # and# will # and # jean # and # karl,
title = {Diffusion-based spatial priors for functional magnetic resonance images},
journal = ni,
year = 2008,
volume = 41,
number = {2},
pages = {408--423},
doi = {10.1016/j.neuroimage.2008.02.005},
keyword = {fMRI, spatial, bayesian}
}
@Article{justin_fdr,
author = jc # and # karl,
title = {False Discovery Rate Revisited: FDR and Topological Inference Using {G}aussian Random Fields},
journal = ni,
year = 2009,
volume = 44,
number = {2},
pages = {62--70},
doi = {10.1016/j.neuroimage.2008.05.021},
keyword = {FDR,RFT,topological}
}
@Article{marta_mmndcm,
author = mg # and # karl # and # klaas # and # sjk # and # {T. Baldeweg} # and # jk,
title = {The functional anatomy of the {MMN}: A {DCM} study of the roving paradigm},
journal = ni,
year = 2008,
volume = 42,
number = {2},
pages = {936--944},
doi = {10.1016/j.neuroimage.2008.05.018},
pdf = {/spm/doc/papers/Garrido_NeuroImage_42_936_2008.pdf},
keyword = {DCM,EEG}
}
@Article{klaas_nonlindcm,
author = klaas # and # {L. Kasper} # and # lee # and # jean # and # hdo # and # {M. Breakspear} # and # karl,
title = {Nonlinear Dynamic Causal Models for {FMRI}},
journal = ni,
year = 2008,
volume = 42,
number = {2},
pages = {649--662},
doi = {10.1016/j.neuroimage.2008.04.262},
pdf = {/spm/doc/papers/Stephan_NeuroImage_42_649_2008.pdf},
keyword = {DCM,fMRI}
}
@Article{andre_sigmoid,
author = acm # and # jean # and # sjk # and # karl,
title = {Population dynamics: Variance and the sigmoid activation function},
journal = ni,
year = 2008,
volume = 42,
number = {1},
pages = {147--157},
doi = {10.1016/j.neuroimage.2008.04.239},
keyword = {DCM,EEG}
}
@Article{cc_induced,
author = ccc # and # sjk # and # karl,
title = {Dynamic causal modelling of induced responses},
journal = ni,
year = 2008,
volume = 41,
number = {4},
pages = {1293--1312},
doi = {10.1016/j.neuroimage.2008.03.026},
keyword = {DCM}
}
@Article{rm_spectralnmm,
author = rm # and # sjk # and # {N. Rombach} # and # {W.T. O'Connor} # and # {K.J. Murphy} # and # {R.B. Reilly} # and # karl,
title = {Bayesian estimation of synaptic physiology from the spectral responses of neural masses},
journal = ni,
year = 2008,
volume = 42,
number = {1},
pages = {272--284},
doi = {10.1016/j.neuroimage.2008.01.025},
pdf = {/spm/doc/papers/Moran_NeuroImage_42_272_2008.pdf},
keyword = {Bayesian}
}
@Article{karl_msp,
author = karl # and # lee # and # jean # and # sjk # and # cp # and # nelson # and # rnah # and # gf # and # jm,
title = {Multiple sparse priors for the M/EEG inverse problem},
journal = ni,
year = 2008,
volume = 39,
number = {3},
pages = {1104--1120},
doi = {10.1016/j.neuroimage.2007.09.048},
keyword = {EEG,MEG}
}
@Article{vl_group,
author = vl # and # karl,
title = {Electromagnetic source reconstruction for group studies},
journal = ni,
year = 2008,
volume = {42},
number = {4},
pages = {1490--1498},
doi = {10.1016/j.neuroimage.2008.06.022},
keyword = {EEG,MEG}
}
@Article{jeremie_canonical,
author = jm # and # rnah # and # karl,
title = {Canonical Source Reconstruction for MEG},
journal = {Comput Intell Neurosci.},
year = 2007,
volume = {2007},
number = {67613},
pages = {},
doi = {10.1155/2007/67613},
keyword = {MEG}
}
@Article{mvb,
author = karl # and # cchu # and # {Janaina Mour\~{a}o-Miranda} # and # {Oliver Hulme} # and # gr # and # will # and # john,
title = {Bayesian decoding of brain images},
journal = ni,
year = 2008,
volume = {39},
number = {1},
pages = {181--205},
doi = {10.1016/j.neuroimage.2007.08.013},
keyword = {Bayesian,multivariate}
}
@Article{rm_massmodelspectral,
author = rm #and # sjk # and # klaas # and # {R.B. Reilly} # and # jean # and # karl,
title = {A neural mass model of spectral responses in electrophysiology},
journal = ni,
year = 2007,
volume = {37},
number = {3},
pages = {706--720},
doi = {10.1016/j.neuroimage.2007.05.032 },
pdf = {/spm/doc/papers/Moran_NeuroImage_37_706_2007.pdf},
keyword = {EEG}
}
@Article{jean_mesostate,
author = jean # and # karl,
title = {A mesostate-space model for {EEG} and {MEG}},
journal = ni,
year = 2007,
volume = {38},
number = {1},
pages = {67--81},
doi = {10.1016/j.neuroimage.2007.06.034 },
keyword = {EEG,MEG}
}
@Article{lee_sparsediffusion,
author = lee # and # will # and # gf # and # {C. Ruff} # and # nw # and # karl,
title = {Sparse diffusion-based spatial models for functional magnetic resonance images},
journal = ni,
year = 2008,
volume = {},
number = {},
pages = {},
doi = {10.1016/j.neuroimage.2008.08.012},
keyword = {fMRI,spatial}
}
@Article{mb_lesions,
author = {M. Brett} # and # {A. Leff} # and # {C. Rorden} # and # john,
title = {Spatial Normalization of Brain Images with Focal Lesions Using Cost Function Masking },
journal = ni,
year = 2001,
volume = {14},
number = {2},
pages = {486--500},
doi = {10.1006/nimg.2001.0845 },
keyword = {spatial, normalisation, mri}
}
@Article{cms_multiple,
author = {C. M. Stonnington} # and # {G. Tan} # and # {S. Kl\"{o}ppel} # and # cchu # and # {B. Draganski} # and # {C.R Jack Jr} # and # {K. Chen} # and # john # and # rsjf,
title = {Interpreting scan data acquired from multiple scanners: A study with Alzheimer's disease },
journal = ni,
year = 2008,
volume = {39},
number = {3},
pages = {1180--1185},
doi = {10.1016/j.neuroimage.2007.09.066 },
keyword = {mri}
}
@Article{jenny_lesions,
author = {J. Crinion} # and # john # and # {A. Leff} # and # {M. Brett} # and # cjp # and # karl,
title = {Spatial normalization of lesioned brains: Performance evaluation and impact on f{MRI} analyses},
journal = ni,
year = 2007,
volume = {37},
number = {3},
pages = {866--875},
doi = {10.1016/j.neuroimage.2007.04.065},
keyword = {spatial, normalisation, mri}
}
@Article{good_patterns,
author = {C. Good} # and # {R. Scahill} # and # {N.C. Fox} # and # john # and # karl # and # {D. Chan} # and # {W.R. Crum} # and # {M.N. Rossor} # and # rsjf,
title = {Automatic Differentiation of Anatomical Patterns in the Human Brain: Validation with Studies of Degenerative Dementias},
journal = ni,
year = 2002,
volume = {17},
number = {1},
pages = {29--46},
doi = {10.1006/nimg.2002.1202},
keyword = {mri}
}
@Article{woermann_epilepsy,
author = {F.G. Woermann} # and # {S. Free} # and # {M. Koepp} # and # john # and # {J.S. Duncan},
title = {Voxel-by-Voxel Comparison of Automatically Segmented Cerebral Gray Matter -- Rater-Independent Comparison of Structural {MRI} in Patients with Epilepsy},
journal = ni,
year = 1999,
volume = {10},
number = {4},
pages = {373--384},
doi = {10.1006/nimg.1999.0481},
keyword = {mri}
}
@Article{john_cai,
author = john # and # {J.G. Csernansky} # and # {C. Davatzikos} # and # {N.C. Fox} # and # {G.B. Frisoni} # and # {P.M. Thomson},
title = {Computer-assisted imaging to assess brain structure in healthy and diseased brains},
journal = {The Lancet Neurology},
year = 2003,
volume = {2},
number = {2},
pages = {79--88},
doi = {10.1016/S1474-4422(03)00304-1},
keyword = {mri}
}
@Article{hillary_braininjury,
author = {F.G. Hillary} # and # {J. Steffener} # and # {B.B. Biswal} # and # {G. Lange} # and # {J. DeLuca} # and # john,
title = {FMRI technology and traumatic brain injury rehabilitation: Guidelines for methodological and conceptual pitfalls},
journal = {Journal of Head Trauma Rehabilitation},
year = 2003,
volume = {17},
number = {5},
pages = {411--430},
doi = {},
keyword = {mri}
}
@Article{good_comp,
author = {C. Good} # adnd # john # and # rsjf,
title = {Computational neuroanatomy: new perspectives for neuroradiology},
journal = {Rev Neurol (Paris)},
year = 2001,
volume = {157},
number = {8--9},
pages = {797--806},
doi = {},
keyword = {}
}
@Article{klaas_BCW,
author = klaas # and # {J.J. Riera} # and # {G. Deco} # and # {B. Horwitz},
title = {The Brain Connectivity Workshops: Moving the frontiers of computational systems neuroscience },
journal = ni,
year = 2008,
volume = {42},
number = {1},
pages = {1--9},
doi = {10.1016/j.neuroimage.2008.04.167},
pdf = {/spm/doc/papers/Stephan_NeuroImage_42_1_2008.pdf},
keyword = {DCM}
}
@Article{mg_feedback,
author = mg # and # jk # and # sjk # and # karl,
title = {Evoked brain responses are generated by feedback loops},
journal = {PNAS},
year = 2007,
volume = {104},
number = {52},
pages = {20961--20966},
doi = {10.1073/pnas.0706274105 },
keyword = {DCM,EEG}
}
@Article{matthias_dcm_constraints,
author = {Matthias Fastenrath} # and # karl # and # sjk,
title = {Dynamical causal modelling for M/EEG: Spatial and temporal symmetry constraints},
journal = ni,
year = 2008,
volume = {},
number = {},
pages = {},
doi = {10.1016/j.neuroimage.2008.07.041},
keyword = {DCM,MEG,EEG}
}
@Article{stefan_dcm_meeg,
author = sjk # and # mg # and # rm # and # ccc # and # karl,
title = {Dynamic causal modeling for EEG and MEG},
journal = hbm,
year = 2009,
volume = {30},
number = {6},
pages = {1866--1876},
doi = {10.1002/hbm.20775},
keyword = {DCM, EEG, MEG}
}
@Article{stefan_neurodynamics,
author = sjk # and # mg # and # rm # and # karl,
title = {Dynamic causal modelling for EEG and MEG},
journal = {Cognitive Neurodynamics},
year = 2008,
volume = {2},
number = {2},
pages = {121--136},
doi = {10.1007/s11571-008-9038-0},
keyword = {DCM, EEG, MEG}
}
@Article{stefan_vb_ecd,
author = sjk # and # jean # and # cp # and # karl,
title = {Variational Bayesian inversion of the equivalent current dipole model in EEG/MEG},
journal = ni,
year = 2008,
volume = {39},
pages = {728--741},
number = {2},
doi = {10.1016/j.neuroimage.2007.09.005}
}
@Article{will_robust,
author = will # and # jk # and # {F. Blankenburg},
title = {Robust Bayesian General Linear Models},
journal = ni,
year = 2007,
volume = {36},
number = {3},
pages = {661--671},
doi = {10.1016/j.neuroimage.2007.01.058},
keyword = {GLM}
}
@Article{andre_laplace,
author = acm # and # sjk # and # jean # and # lee # and # karl,
title = {Population dynamics under the Laplace assumption},
journal = ni,
year = 2008,
volume = {},
number = {},
pages = {},
doi = {10.1016/j.neuroimage.2008.10.008},
keyword = {}
}
@Article{justin_mh,
author = jc # and # karl # and # {T. Fearn} # and # sjk,
title = {A Metropolis-Hastings algorithm for dynamic causal models},
journal = ni,
year = 2007,
volume = {38},
number = {3},
pages = {478--487},
doi = {10.1016/j.neuroimage.2007.07.028},
keyword = {}
}
@Article{karl_vb_laplace,
author = karl # and # jm # and # nelson # and # john # and # will,
title = {Variational free energy and the Laplace approximation},
journal = ni,
year = 2007,
volume = {34},
number = {1},
pages = {220--234},
doi = {10.1016/j.neuroimage.2006.08.035},
keyword = {}
}
@PhDThesis{marta_phd,
author = mg,
title = {Causal Modelling of Evoked Brain Responses},
school = {University College London},
year = {2008},
keyword = {DCM,EEG},
pdf = {/spm/doc/papers/Garrido_thesis.pdf}
}
@Article{cjp_block,
author = cjp # and # {D.J. Veltman} # and # john # and # oj # and # karl,
title = {The critical relationship between the timing of the stimulus presentation and data acquisition in blocked designs with fMRI},
journal = ni,
year = 1999,
volume = 10,
pages = {36--44},
doi = {10.1006/nimg.1999.0447},
keyword = {fMRI},
}
@Article{uta_fiac,
author = {U. Noppeney} # and # will,
title = {Two approaches to repetition suppression},
journal = hbm,
year = 2006,
volume = 27,
pages = {411--416},
doi = {10.1002/hbm.20242},
keyword = {fMRI},
}
@Article{klaas_bms,
author = klaas # and # will # and # jean # and # rm # and # karl,
title = {Bayesian model selection for group studies},
journal = ni,
year = 2009,
volume = 46,
number = 3,
pages = {1004--10174},
doi = {10.1016/j.neuroimage.2009.03.025},
keyword = {DCM,BMC,Bayesian,group},
pdf = {/spm/doc/papers/Stephan_NeuroImage_46_1004_2009.pdf}
}
@Article{cc_asymm,
author = ccc # and # rnah # and # klaas # and # jk # and # karl,
title = {Forward and backward connections in the brain: A DCM study of functional asymmetries},
journal = ni,
year = 2009,
volume = 45,
number = 2,
pages = {453--462},
doi = {10.1016/j.neuroimage.2008.12.041},
keyword = {DCM,MEG},
pdf = {}
}
@Article{jean_distributed,
author = jean # and # sjk # and # karl,
title = {Dynamic causal modelling of distributed electromagnetic responses},
journal = ni,
year = 2009,
doi = {10.1016/j.neuroimage.2009.04.062},
keyword = {DCM,EEG,MEG},
}
@Article{john_averageshape,
author = john # and # karl,
title = {Computing average shaped tissue probability templates},
journal = ni,
year = 2008,
volume = 45,
number = 2,
pages = {333--341},
doi = {10.1016/j.neuroimage.2008.12.008},
keyword = {},
}
@Article{chloe_thickness,
author = ch # and # {E. De Vita} # and # john # and # ralf # and # rt,
title = {Voxel-based cortical thickness measurements in MRI},
journal = ni,
year = 2008,
volume = 40,
number = 4,
pages = {1701--1710},
doi = {10.1016/j.neuroimage.2008.01.027},
keyword = {},
}
@Article{klein_evaluation,
author = {A. Klein} # and # ja # and # {B.A. Ardekani} # and # john # and # {B. Avants} # and # {M.-C. Chiang} # and # {G.E. Christensen} # and # {D.L. Collins} # and # {J. Gee} # and # {P. Hellier} # and # {J.H. Song} # and # {M. Jenkinson} # and # {C. Lepage} # and # {D. Rueckert} # and # {P. Thomson} # and # {T. Vercauteren} # and # {R.P. Woods} # and # {J.J. Mann} # and # {R. Parsey},
title = {Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration},
journal = ni,
year = 2009,
volume = 46,
number = 3,
pages = {786--802},
doi = {10.1016/j.neuroimage.2008.12.037},
keyword = {},
}
@Article{john_computanat,
author = john,
title = {Computational anatomy with the {SPM} software},
journal = {Magnetic Resonance Imaging},
year = 2009,
volume = {},
number = {},
pages = {},
doi = {10.1016/j.mri.2009.01.006},
keyword = {},
}
@Article{rnah_fusion,
author = rnah # and # {E. Mouchlianitis} # and # karl,
title = {MEG and EEG data fusion: Simultaneous localisation of face-evoked responses},
journal = ni,
year = 2009,
volume = {},
number = {},
pages = {},
doi = {10.1016/j.neuroimage.2009.04.063},
keyword = {EEG, MEG},
pdf = {/spm/doc/papers/HensonEtAl_Neuroimage_09_MEEG_fusion.pdf}
}
@Article{rnah_forward,
author = rnah # and # jm # and # cp # and # karl,
title = {Selecting forward models for MEG source-reconstruction using model-evidence},
journal = ni,
year = 2009,
volume = {46},
number = {1},
pages = {168--176},
doi = {10.1016/j.neuroimage.2009.01.062},
keyword = {MEG},
pdf = {/spm/doc/papers/HensonEtAl_Neuroimage_09_MEG_Forward_Models.pdf}
}
@article{dcm_phase,
author = will # and # vl # and # {L. Fuentemilla} # and # {E. Duzel} # and # karl,
title = {Dynamic {C}ausal {M}odels for phase coupling},
journal = jnm,
year = {2009},
volume = {183},
number = {1},
pages = {19--30}
}
@Article{dcm_ssr,
author = rm # and # klaas # and # {T. Seidenbecher} # and # {H.C. Pape} # and # rd # and # karl,
title = {Dynamic causal models of steady-state responses},
journal = ni,
year = 2009,
volume = {44},
number = {3},
pages = {796--811},
doi = {10.1016/j.neuroimage.2008.09.048},
keyword = {DCM}
}
@InProceedings{dcm_ssr_anaesthesia,
author = rm # and # klaas # and # {F. Jung} # and # {R. Graf} # and # rd # and # karl # and # {M. Tittgemeyer},
title = {DCM for Steady State Responses: a case study of anaesthesia dept},
booktitle = {Proc Soc for Neuroscience},
year = {2009}
}
@Article{mjrosa_bms,
author = mjr # and # {S. Bestmann} # and # lee # and # will,
title = {Bayesian {M}odel {S}election {M}aps for {G}roup {S}tudies},
journal = ni,
year = {2009},
volume = {49},
number = {1},
pages = {217--224},
doi = {10.1016/j.neuroimage.2009.08.051}
}
@Article{mjrosa_eegfmri,
author = mjr # and # jk # and # {F. Blankenburg} # and # oj # and # will,
title = {Estimating the transfer function from neuronal activity to {BOLD} using simultaneous {EEG}-f{MRI}},
journal = ni,
year = {2009},
volume = {},
number = {},
pages = {},
doi = {10.1016/j.neuroimage.2009.09.011}
}
@Article{jc_topoFDR,
author = jc # and # kjw # and # gf # and # karl,
title = {Topological {FDR} for neuroimaging},
journal = ni,
year = {2010},
volume = {49},
number = {4},
pages = {3057--3064},
doi = {10.1016/j.neuroimage.2009.10.090},
keyword = {FDR,RFT,topological}
}
@Article{klaas_dcm_dwi,
author = klaas # and # {M. Tittgemeyer} # and # {T.R. Knosche} # and # rm # and # karl,
title = {Tractography-based priors for dynamic causal models},
journal = ni,
year = {2009},
volume = {47},
number = {1},
pages = {1628--1638 },
doi = {10.1016/j.neuroimage.2009.05.096},
pdf = {/spm/doc/papers/Stephan_NeuroImage_47_1628_2009.pdf}
}
@Article{marta_rsp,
author = mg # and # jk # and # sjk # and # {T. Baldeweg} # and # karl,
title = {Repetition suppression and plasticity in the human brain},
journal = ni,
year = {2009},
volume = {48},
number = {1},
pages = {269--279 },
doi = {10.1016/j.neuroimage.2009.06.034},
pdf = {/spm/doc/papers/Garrido_NeuroImage_48_269_2009.pdf}
}
@Article{klaas_dysconnect,
author = klaas # and # karl # and # cf,
title = {Dysconnection in Schizophrenia: From Abnormal Synaptic Plasticity to Failures of Self-monitoring},
journal = {Schizophrenia Bulletin},
year = {2009},
volume = {35},
number = {3},
pages = {509--527},
doi = {10.1093/schbul/sbn176},
pdf = {/spm/doc/papers/Stephan_SchizophrBull_35_509_2009.pdf}
}
@Article{rnah_fmripriors,
author = rnah # and # gf # and # karl # and # jm,
title = {A Parametric Empirical Bayesian framework for f{MRI}-constrained {MEG}/{EEG} source reconstruction},
journal = hbm,
year = {2010},
volume = {31},
number = {10},
pages = {1512--1531},
doi = {10.1002/hbm.20956},
pdf = {/spm/doc/papers/rnah_HBM_10_fMRIPriors_EMEG.pdf}
}
@Article{vl_optibf,
author = vl # and # {A. Eusebio} # and # {A. Jha} # and # {R. Oostenveld} # and # gb # and # will # and # {L. Zrinzo} # and # {M.I. Hariz} # and # {P. Limousin} #and # karl # and # {P. Brown},
title = {Optimised beamforming for simultaneous MEG and intracranial local field potential recordings in deep brain stimulation patients},
journal = ni,
year = {2010},
volume = {in press},
number = {},
pages = {},
doi = {10.1016/j.neuroimage.2009.12.115}
}
@Article{jean_spikewave,
author = jean # and # {A.E. Vaudano} #and # {L. Lemieux},
title = {Bayesian multi-modal model comparison: A case study on the generators of the spike and the wave in generalized spike-wave complexes},
journal = ni,
year = {2010},
volume = {49},
number = {1},
pages = {656--667},
doi = {10.1016/j.neuroimage.2009.06.048}
}
@Article{jean_vbstoch,
author = jean # and # karl # and # sjk,
title = {Variational Bayesian identification and prediction of stochastic nonlinear dynamic causal models},
journal = {Physica D: nonlinear phenomena},
year = {2009},
volume = {238},
number = {21},
pages = {2089--2118},
doi = {10.1016/j.physd.2009.08.002}
}
@Article{klaas_10rulesdcm,
author = klaas # and # will # and # rm # and # {H.E. Den Ouden} # and # jean # and # karl,
title = {Ten simple rules for dynamic causal modelling},
journal = ni,
year = {2010},
volume = {49},
number = {4},
pages = {3099--3109},
doi = {10.1016/j.neuroimage.2009.11.015},
keyword = {DCM},
pdf = {/spm/doc/papers/Stephan_NeuroImage_49_3099_2010.pdf}
}
@Article{dcm_multi_subj,
author = {C.H. Kasess} # and # klaas # and # {A. Weissenbacher} # and # {L. Pezawas} # and # {E. Moser} # and # {C. Windischberger} ,
title = {Multi-Subject Analyses with Dynamic Causal Modeling},
journal = ni,
year = {2010},
volume = {49},
number = {4},
pages = {3065--3074},
doi = {10.1016/j.neuroimage.2009.11.037}
}
@Article{dcm_families,
author = will # and # klaas # and # jean # and # mjr # and # karl # and # {T.M.Schofield} # and # {A.P. Leff},
title = {Comparing Families of Dynamic Causal Models},
journal = {PLoS Comput Biol},
year = {2010},
volume = {6},
number = {3},
pages = {e1000709},
doi = {10.1371/journal.pcbi.1000709},
pdf = {/spm/doc/papers/Penny_PLoSCompBiol_6_e1000709.pdf}
}
@Article{hanneke_pe,
author = hdo # and # jean # and # {J. Roiser} # and # karl # and # klaas,
title = {Striatal Prediction Error Modulates Cortical Coupling},
journal = jn,
year = {2010},
volume = {30},
number = {9},
pages = {3210--3219},
doi = {10.1523/JNEUROSCI.4458-09.2010},
pdf = {/spm/doc/papers/DenOuden_JNeurosci_30_3210_2010.pdf}
}
@Article{andre_neuropopdyn,
author = acm # and # sjk # and # karl,
title = {A dynamic causal model study of neuronal population dynamics},
journal = ni,
year = {2010},
volume = {51},
number = {1},
pages = {91--101},
doi = {10.1016/j.neuroimage.2010.01.098}
}
@Article{justin_poisson,
author = jc # and # gf # and # {M.H. Seghier} # and # karl,
title = {Multinomial inference on distributed responses in {SPM}},
journal = ni,
year = {2010},
volume = {in press},
number = {},
pages = {},
doi = {10.1016/j.neuroimage.2010.05.076}
}
@Article{klaas_effcon_fmri,
author = klaas # and # karl,
title = {Analyzing effective connectivity with functional magnetic resonance imaging},
journal = {WIREs Cognitive Sience},
year = {2010},
volume = {1},
number = {},
pages = {446--459},
doi = {10.1002/wcs.58},
pdf = {/spm/doc/papers/Stephan_WIREsCognSci_1_446_2010.pdf},
keyword = {DCM, fMRI}
}
@Article{karl_network_discovery,
author = karl # and # {B. Li} # and # jean # and # klaas,
title = {Network discovery with DCM},
journal = ni,
year = {2010},
volume = {in press},
number = {},
pages = {},
doi = {10.1016/j.neuroimage.2010.12.039},
keyword = {DCM}
}
@Article{meeg_spm8,
author = vl # and # jm # and # sjk # and # cp # and # rnah # and # jk # and # gb # and # {R. Oostenveld} # and # jean # and # gf #and # will # and # karl,
title = {{EEG} and {MEG} data analysis in {SPM8}},
journal = {Comput. Intell. Neurosci.},
year = {2011},
volume = {2011},
number = {852961},
pages = {},
doi = {10.1155/2011/852961},
pdf = {/spm/doc/papers/852961.pdf},
keyword = {introduction, EEG, MEG}
}
@Article{jean_oto1,
author = jean # and # {H.E.M den Ouden} # and # {M. Pessiglione} # and # klaas # and # sjk # and # karl,
title = {Observing the observer (I): meta-Bayesian models of learning and decision-making},
journal = {Plos One},
year = {2010},
volume = {5},
number = {12},
pages = {e15554},
doi = {10.1371/journal.pone.0015554},
pdf = {/spm/doc/papers/Daunizeau_PLOSOne_5_e15554.pdf},
keyword = {Bayesian}
}
@Article{jean_oto2,
author = jean # and # {H.E.M den Ouden} # and # {M. Pessiglione} # and # sjk # and # karl # and # klaas,
title = {Observing the observer (II): deciding when to decide},
journal = {Plos One},
year = {2010},
volume = {5},
number = {12},
pages = {e15555},
doi = {10.1371/journal.pone.0015555},
pdf = {/spm/doc/papers/Daunizeau_PLOSOne_5_e15555.pdf},
keyword = {Bayesian}
}
@Article{maria_eeg_fmri_integ,
author = mjr # and # jean # and # karl,
title = {EEG-fMRI integration : a critical review of biophysical modelling and data analysis approaches},
journal = {J. Integrative Neurosci.},
year = {2010},
volume = {9},
number = {4},
pages = {453--476},
doi = {},
keyword = {}
}
@Article{james_topological_inference,
author = jk # and # karl,
title = {Topological Inference for {EEG} and {MEG}},
journal = {The Annals of Applied Statistics},
year = {2010},
volume = {4},
number = {3},
pages = {1272--1290},
doi = {10.1214/10-AOAS337},
pdf = {/spm/doc/papers/1011.2901v1.pdf},
keyword = {RFT, topological, EEG, MEG}
}
@Article{karl_action_behaviour,
author = karl # and # jean # and # jk # and # sjk,
title = {Action and behavior: a free-energy formulation},
journal = {Biol. Cybern.},
year = {2010},
volume = {102},
number = {3},
pages = {227--260},
doi = {10.1007/s00422-010-0364-z},
pdf = {/spm/doc/papers/Action_and_behavior_A_free-energy_formulation.pdf},
keyword = {DEM}
}
@Article{harriet_attention_uncertainty,
author = {Harriet Feldman} # and # karl,
title = {Attention, uncertainty, and free-energy},
journal = {Frontiers in Human Neuroscience},
year = {2010},
volume = {4},
number = {215},
pages = {},
doi = {10.3389/fnhum.2010.00215},
pdf = {/spm/doc/papers/Attention_uncertainty_and_free-energy.pdf},
keyword = {DEM}
}
@Article{karl_cortical_circuits,
author = karl # and # sjk,
title = {Cortical circuits for perceptual inference},
journal = {Neural Networks},
year = {2009},
volume = {22},
number = {},
pages = {1093--1104},
doi = {10.1016/j.neunet.2009.07.023},
pdf = {/spm/doc/papers/Cortical_circuits_for_perceptual_inference.pdf},
keyword = {DEM}
}
@Article{karl_variational_filtering,
author = karl,
title = {Variational filtering},
journal = ni,
year = 2008,
volume = 41,
number = {3},
pages = {747--766},
doi = {10.1016/j.neuroimage.2008.03.017},
pdf = {/spm/doc/papers/Variational_filtering.pdf},
keyword = {DEM}
}
@Article{karl_DEM,
author = karl # and # nelson # and # jean,
title = {{DEM}: A variational treatment of dynamic systems},
journal = ni,
year = 2008,
volume = 41,
number = {3},
pages = {849--885},
doi = {10.1016/j.neuroimage.2008.02.054},
pdf = {/spm/doc/papers/DEM_A_variational_treatment_of_dynamic_systems.pdf},
keyword = {DEM}
}
@Article{karl_generalised_filtering,
author = karl # and # klaas # and # bl # and # jean,
title = {Generalised Filtering},
journal = {Mathematical Problems in Engineering},
year = {2010},
volume = {621670},
number = {},
pages = {},
doi = {10.1155/2010/621670},
pdf = {/spm/doc/papers/Friston_MathProblEngin_2010_621670.pdf},
keyword = {DEM}
}
@Article{karl_hierarchical_models,
author = karl,
title = {Hierarchical Models in the Brain},
journal = {PLOS Computational Biology},
year = {2008},
volume = {4},
number = {11},
pages = {e1000211},
doi = {10.1371/journal.pcbi.1000211},
pdf = {/spm/doc/papers/Hierarchical_Models_in_the_Brain.pdf},
keyword = {DEM}
}
@Article{karl_reinforcement_learning,
author = karl # and # jean # and # sjk,
title = {Reinforcement Learning or Active Inference?},
journal = {PLOS One},
year = {2009},
volume = {4},
number = {7},
pages = {e6421},
doi = {10.1371/journal.pone.0006421},
pdf = {/spm/doc/papers/Reinforcement_Learning_or_Active_Inference.pdf},
keyword = {DEM}
}
@Article{Brodersen_NeuroImage_56_601_2011,
author = {Kay H. Brodersen} # and # {Florent Haiss} # and # {Cheng Soon Ong} # and # {Fabienne Jung} # and # {Marc Tittgemeyer} # and # {Joachim M. Buhmann} # and # {Bruno Weber} # and # klaas,
title = {Model-based feature construction for multivariate decoding},
journal = ni,
year = 2011,
volume = 56,
number = {2},
pages = {601--615},
doi = {10.1016/j.neuroimage.2010.04.036},
pdf = {/spm/doc/papers/Brodersen_NeuroImage_56_601_2011.pdf}
}
@Article{mjr_bmc_coupling,
author = mjr # and # jk # and # will,
title = {Bayesian Comparison of Neurovascular Coupling Models Using EEG-fMRI},
journal = {PLOS Computational Biology},
year = 2011,
volume = 7,
number = {6},
pages = {e1002070},
doi = {10.1371/journal.pcbi.1002070},
keyword = {BMC}
}
@Article{Brodersen_PlosCB_e1002079,
author = {K.H Brodersen} # and # {T.M. Schofield} # and # {A.P. Leff} # and # {C.S. Ong} # and # {E.I. Lomakina} # and # {J.M. Buhmann} # and # klaas,
title = {Generative Embedding for Model-Based Classification of fMRI Data},
journal = {PLOS Computational Biology},
year = 2011,
volume = 7,
number = {6},
pages = {e1002079},
doi = {10.1371/journal.pcbi.1002079},
keyword = {DCM},
pdf = {/spm/doc/papers/Brodersen_PLoS_7_e1002079_2011.pdf}
}
@Article{Henson_FiHN_2011,
author = rnah # and # {D.G. Wakeman} # and # vl # and # karl,
title = {A parametric empirical Bayesian framework for the EEG/MEG inverse problem: generative models for multi-subject and multi-modal integration},
journal = {Frontiers in Human Neuroscience},
year = 2011,
volume = 5,
number = {76},
pages = {},
doi = {10.3389/fnhum.2011.00076},
keyword = {EEG, MEG, Bayesian},
pdf = {/spm/doc/papers/HensonEtAl_FiHN_11_PEB_MEEG.pdf}
}
@Article{Daunizeau_NI_2011,
author = jean # and # od # and # klaas,
title = {Dynamic causal modelling: A critical review of the biophysical and statistical foundations},
journal = ni,
year = 2011,
volume = 58,
number = {},
pages = {312--322},
doi = {10.1016/j.neuroimage.2009.11.062},
keyword = {DCM},
pdf = {/spm/doc/papers/Daunizeau_NeuroImage_58_312_2011.pdf}
}
@Article{Daunizeau_PLosCB_2011,
author = jean # and # {K. Preuschoff} # and # karl # and # klaas,
title = {Optimizing experimental design for comparing models of brain function},
journal = {PLoS Comp. Biol.},
year = 2011,
volume = 7,
number = {11},
pages = {e1002280},
doi = {10.1371/journal.pcbi.1002280},
keyword = {DCM},
pdf = {}
}
@Article{Daunizeau_NI_2012,
author = jean # and # klaas # and # karl,
title = {Stochastic Dynamic Causal Modelling of fMRI data: should we care about neural noise?},
journal = ni,
year = 2012,
volume = {62},
number = {1},
pages = {464--481},
doi = {10.1016/j.neuroimage.2012.04.061},
keyword = {DCM},
pdf = {}
}
@Article{Rosa_2012,
author = mjr # and # karl # and # will,
title = {Post-hoc selection of dynamic causal models},
journal = ni,
year = 2012,
volume = {},
number = {},
pages = {},
doi = {10.1016/j.jneumeth.2012.04.013},
keyword = {},
pdf = {},
note = {In Press}
}
@Article{Garrido_amygdala,
author = {M.I. Garrido} # and # gb # and # {M. Sahani} # and # {R.J. Dolan},
title = {Functional evidence for a dual route to amygdala},
journal = {Current Biology},
year = 2012,
volume = {22},
number = {},
pages = {129--134},
doi = {10.1016/j.cub.2011.11.056},
keyword = {},
pdf = {},
note = {}
}
@Article{Litvak_ConvModel_2013,
author = vl # and # {Ashwani Jha} # and # gf # and # karl,
title = {Convolution models for induced electromagnetic responses},
journal = ni,
year = 2013,
volume = {64},
number = {},
pages = {388--398},
doi = {10.1016/j.neuroimage.2012.09.014},
keyword = {EEG,MEG,GLM},
pdf = {/spm/doc/papers/Litvak_ConvModel_2013.pdf},
note = {}
}
@Article{Pinotsis_DCM_NF_2012,
author = dp # and # rm # and # karl,
title = {Dynamic causal modeling with neural fields},
journal = ni,
year = 2012,
volume = {59},
number = {2},
pages = {1261--1274},
doi = {10.1016/j.neuroimage.2011.08.020},
keyword = {DCM},
pdf = {/spm/doc/papers/dcm_neural_field.pdf},
note = {}
}
@Article{Pinotsis_DCM_visual_2013,
author = dp # and # {D.S. Schwarzkopf} # and # vl # and # gr # and # gb # and # karl,
title = {Dynamic causal modelling of lateral interactions in the visual cortex},
journal = ni,
year = 2013,
volume = {66},
number = {1},
pages = {563-576},
doi = {10.1016/j.neuroimage.2012.10.078},
keyword = {DCM},
pdf = {/spm/doc/papers/dcm_latinter_visualcortex.pdf},
note = {}
}
@Article{MEEG_Good_Practice,
author = {J. Gross and S. Baillet} # and # gb # and # rnah # and # {A. Hillebrand and O. Jensen and K. Jerbi} # and # vl # and # {B. Maess and R. Oostenveld and L. Parkkonenand J.R. Taylor and V. van Wassenhove and M. Wibral and J.M. Schoffelen},
title = {Good practice for conducting and reporting MEG research},
journal = ni,
year = 2013,
volume = {65},
number = {},
pages = {349--363},
doi = {10.1016/j.neuroimage.2012.10.001},
keyword = {EEG,MEG},
pdf = {/spm/doc/papers/meeg_good_practice.pdf},
note = {}
}
@Article{Ridgway20122131,
author = ged # and # vl # and # gf # and # karl # and # will,
title = {The problem of low variance voxels in statistical parametric mapping; a new hat avoids a 'haircut'},
journal = ni,
volume = {59},
number = {3},
pages = {2131--2141},
year = {2012},
note = {},
doi = {10.1016/j.neuroimage.2011.10.027},
keywords = {EEG,MEG}
}
@Article{Barnes2013,
author = gb # and # ged # and # gf # and # {M. Woolrich} # and # karl,
title = {Set-level threshold-free tests on the intrinsic volumes of {SPM}s},
journal = ni,
volume = {68},
number = {100},
pages = {133--140},
year = {2013},
note = {},
doi = {10.1016/j.neuroimage.2012.11.046},
keywords = {RFT}
}
@Article{Diedrichsen20111665,
author = {J\"{o}rn Diedrichsen} # and # ged # and # karl # and # {T. Wiestler},
title = {Comparing the similarity and spatial structure of neural representations: A pattern-component model},
journal = ni,
volume = {55},
number = {4},
pages = {1665--1678},
year = {2011},
note = {},
doi = {10.1016/j.neuroimage.2011.01.044},
keywords = {}
}
@PhDThesis{ged_phd,
author = ged,
title = {Statistical analysis for longitudinal MR imaging of dementia},
school = {University College London},
year = {2010},
url = {http://discovery.ucl.ac.uk/19195/}
}
@Article{weiskopf2011unified,
title = {Unified segmentation based correction of R1 brain maps for RF transmit field inhomogeneities (UNICORT)},
author = {Weiskopf, N. and Lutti, A. and Helms, G. and Novak, M. and Ashburner, J. and Hutton, C.},
journal = ni,
volume = {54},
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pages = {2116--2124},
year = {2011}
}
@Article{hutton2009comparison,
title = {A comparison between voxel-based cortical thickness and voxel-based morphometry in normal aging},
author = {Hutton, C. and Draganski, B. and Ashburner, J. and Weiskopf, N.},
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pages = {371--380},
year = {2009}
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@Article{lambert2011confirmation,
title = {Confirmation of functional zones within the human subthalamic nucleus: Patterns of connectivity and sub-parcellation using diffusion weighted imaging},
author = {Lambert, C. and Zrinzo, L. and Nagy, Z. and Lutti, A. and Hariz, M. and Foltynie, T. and Draganski, B. and Ashburner, J. and Frackowiak, R.},
journal = {Neuroimage},
year = {2011}
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title = {Utilizing temporal information in fMRI decoding: Classifier using kernel regression methods},
author = {Chu, C. and Mour\~{a}o-Miranda, J. and Chiu, Y.C. and Kriegeskorte, N. and Tan, G. and Ashburner, J.},
journal = ni,
volume = {58},
number = {2},
pages = {560--571},
year = {2011}
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title = {Improved segmentation of deep brain grey matter structures using magnetization transfer (MT) parameter maps},
author = {Helms, G. and Draganski, B. and Frackowiak, R. and Ashburner, J. and Weiskopf, N.},
journal = ni,
volume = {47},
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pages = {194--198},
year = {2009}
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title = {Diffeomorphic registration using geodesic shooting and {G}auss--{N}ewton optimisation},
author = john # and # karl,
journal = ni,
volume = {55},
number = {3},
pages = {954--967},
year = {2011}
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@article{chu2011kernel,
title = {Kernel regression for fMRI pattern prediction},
author = {Chu, C. and Ni, Y. and Tan, G. and Saunders, C.J. and Ashburner, J.},
journal = ni,
volume = {56},
number = {2},
pages = {662--673},
year = {2011}
}
@inproceedings{chu2011measuring,
title = {Measuring the Consistency of Global Functional Connectivity Using Kernel Regression Methods},
author = {Chu, C. and Handwerker, D.A. and Bandettini, P.A.} # and # john,
booktitle = {Pattern Recognition in NeuroImaging (PRNI), 2011 International Workshop on},
pages = {41--44},
year = {2011}
}
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title = {Multivariate models of inter-subject anatomical variability},
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journal = ni,
volume = {56},
number = {2},
pages = {422--439},
year = {2011}
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title = {Data sharing in neuroimaging research},
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journal = {Frontiers in Neuroinformatics},
volume = {6},
year = {2012}
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title = {{SPM}: a history},
author = john,
journal = ni,
year = {2011}
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title = {Preparing fMRI data for statistical analysis},
author = john,
journal = {Functional MRI Techniques. Humana Press. Filippi M (ed.)},
year = {2009}
}
@Article{Barnes20111072,
title = {Controlling false positive rates in mass-multivariate tests for electromagnetic responses},
author = gb # and # vl # and # {M.J. Brookes} # and # karl,
journal = ni,
volume = {56},
number = {3},
pages = {1072--1081},
year = {2011},
note = {},
doi = {10.1016/j.neuroimage.2011.02.072}
}
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title = {DCM for complex-valued data: Cross-spectra, coherence and phase-delays},
author = karl # and # {A. Bastos} # and # vl # and # klaas # and # {P. Fries} # and # rm,
journal = ni,
volume = {59},
number = {1},
pages = {439--455},
year = {2012},
doi = {10.1016/j.neuroimage.2011.07.048}
}
@Article{Moran2012e1002124,
title = {Alterations in Brain Connectivity Underlying Beta Oscillations in Parkinsonism},
author = rm # and # {N. Mallet} # and # vl # and # {R.J. Dolan} # and # {P.J. Magill} # and # karl # and # {P. Brown},
journal = {PLoS Comput Biol},
year = {2011},
month = {08},
volume = {7},
pages = {e1002124},
number = {8},
doi = {10.1371/journal.pcbi.1002124}
}
@Article{Daunizeau2013_stochDCM,
title = {An electrophysiological validation of stochastic DCM for fMRI},
author = jean # and # {L. Lemieux} # and # {A.E. Vaudano} # and # karl # and # klaas,
journal = {Frontiers in Computational Neuroscience},
volume = {6},
number = {103},
pages = {},
year = {2013},
doi = {10.3389/fncom.2012.00103},
keywords = {DCM}
}
@article{Pinotsis2013127,
author = dp # and # {E. Hansen} # and # karl # and # {V.K. Jirsa},
title = {Anatomical connectivity and the resting state activity of large cortical networks},
journal = ni,
volume = {65},
number = {0},
year = {2013},
pages = {127--138},
year = {2013},
doi = {10.1016/j.neuroimage.2012.10.016},
url = {http://www.sciencedirect.com/science/article/pii/S1053811912010191},
keywords = {connectivity}
}
@article{Pinotsis201139,
author = dp # and # karl,
title = {Neural fields, spectral responses and lateral connections},
journal = ni,
volume = {55},
number = {1},
pages = {39--48},
year = {2011},
doi = {10.1016/j.neuroimage.2010.11.081},
url = {http://www.sciencedirect.com/science/article/pii/S1053811910015594},
keywords = {DCM}
}
@PhDThesis{maria_phd,
author = mjr,
title = {Development and application of model selection methods for investigating brain function},
school = {University College London},
year = {2012},
pdf = {/spm/doc/theses/maria/MJDRosa_thesis.pdf}
}
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title = {Symmetric Diffeomorphic Modeling of Longitudinal Structural MRI},
author = john # and # ged,
journal = {Frontiers in Neuroscience},
year = {2013},
month = {02},
volume = {6},
number = {197},
publisher = {Frontiers Media SA},
issn = {1662-453X},
url = {http://www.frontiersin.org/brain_imaging_methods/10.3389/fnins.2012.00197/abstract},
doi = {10.3389/fnins.2012.00197}
}
@article{Bastos2012,
author = {A.M. Bastos} # and # {W.M. Usrey} # and # {R.A. Adams} # and # {G.R. Mangun} # and # {P. Fries} # and # karl,
title = {Canonical Microcircuits for Predictive Coding},
journal = {Neuron},
volume = {76},
number = {4},
pages = {695--711},
year = {2012},
doi = {10.1016/j.neuron.2012.10.038},
url = {http://www.sciencedirect.com/science/article/pii/S0896627312009592}
}
@article{Moran2011,
author = rm # and # klaas # and # rd # and # karl,
title = {Neural fields, spectral responses and lateral connections},
journal = ni,
volume = {55},
number = {4},
pages = {1694--1708},
year = {2011},
doi = {10.1016/j.neuroimage.2011.01.012},
url = {http://www.sciencedirect.com/science/article/pii/S1053811911000309}
}
@article{Rigoux2014,
author = {L. Rigoux} # and # klaas # and # karl # and # jean,
title = {Bayesian model selection for group studies -- Revisited},
journal = ni,
volume = {84},
number = {},
pages = {971--985},
year = {2014},
doi = {10.1016/j.neuroimage.2013.08.065},
url = {http://www.sciencedirect.com/science/article/pii/S1053811913009300}
}
@article{rsDCM2014,
author = karl # and # {J. Kahan} # and # {B. Biswal} # and # {A. Razi},
title = {A {DCM} for resting state f{MRI}},
journal = ni,
volume = {94},
number = {},
pages = {396--407},
year = {2014},
doi = {10.1016/j.neuroimage.2013.12.009},
url = {http://www.sciencedirect.com/science/article/pii/S1053811913012135}
}
@article{Kahan2013,
author = {J. Kahan} # and # {T. Foltynie},
title = {Understanding DCM: Ten simple rules for the clinician},
journal = ni,
volume = {83},
number = {},
pages = {542--549},
year = {2013},
doi = {10.1016/j.neuroimage.2013.07.008},
url = {http://www.sciencedirect.com/science/article/pii/S105381191300760X},
keywords = {DCM,connectivity},
pdf = {/spm/doc/papers/Kahan_NeuroImage_DCM_2013.pdf}
}
@article{CoCoMacHistory,
author = klaas,
title = {The history of CoCoMac},
journal = ni,
volume = {80},
number = {},
pages = {46--52},
year = {2013},
doi = {10.1016/j.neuroimage.2013.03.016},
url = {http://www.sciencedirect.com/science/article/pii/S1053811913002589},
keywords = {connectivity}
}
@article{Pinotsis2013,
author = dp # and # {Marco Leite} # and # karl,
title = {On conductance-based neural field models},
journal = {Frontiers in Computational Neuroscience},
volume = {7},
number = {00158},
pages = {},
year = {2013},
doi = {10.3389/fncom.2013.00158},
url = {},
keywords = {DCM}
}
@article{Pinotsis2014a,
author = dp # and # {N.Brunet} # and # {A. Bastos} # and # vl # and # {P.Fries} # and # karl,
title = {Contrast gain control and horizontal interactions in {V1}: A {DCM} study},
journal = ni,
volume = {92},
number = {},
pages = {143--155},
year = {2014},
doi = {10.1016/j.neuroimage.2014.01.047},
url = {},
keywords = {DCM}
}
@article{Moran2013,
author = rm # and # dp # and # karl,
title = {Neural Masses and Fields in Dynamic Causal Modelling},
journal = {Frontiers in Computational Neuroscience},
volume = {7},
number = {00057},
pages = {},
year = {2013},
doi = {10.3389/fncom.2013.00057},
url = {},
keywords = {DCM}
}
@InProceedings{Maumet2014,
author = {C. Maumet} # and # tom # and # {N. Nichols} # and # gf # and # {J. Turner} # and # {K.G. Helmer} # and # {J. Steffener} # and # jbp # and # {S. Ghosh} # and # {D. Keator},
title = {Extending {NI-DM} to share the results and provenance of a neuroimaging study: an example with {SPM}},
booktitle = {20th Annual Meeting of the Organization for Human Brain Mapping},
location = {Hamburg},
year = {2014},
keywords = {}
}
@article{Friston2015,
author = karl # and # {A.M. Bastos} # and # dp # and # vl,
title = {LFP and oscillations - what do they tell us?},
journal = {Current Opinion in Neurobiology},
volume = {31},
number = {},
pages = {1--6},
year = {2015},
doi = {10.1016/j.conb.2014.05.004},
url = {},
keywords = {}
}
@article{Pinotsis2014b,
author = dp # and # karl,
title = {Gamma oscillations and neural field DCMs can reveal cortical excitability and microstructure},
journal = {AIMS Neuroscience Special Issue on Gamma Oscillations},
volume = {1},
number = {},
pages = {4--24},
year = {2014},
doi = {10.3934/Neuroscience.2014.1.18},
url = {},
keywords = {}
}
@article{Pinotsis2014c,
author = dp # and # karl,
title = {Extracting novel information from neuroimaging data using neural fields},
journal = {EPJ Nonlinear Biomedical Physics},
volume = {2},
number = {5},
pages = {},
year = {2014},
doi = {10.1140/epjnbp18},
url = {},
keywords = {}
}
@article{Pinotsis2014d,
author = dp # and # karl,
title = {Neural Fields, Masses and Bayesian Inference},
journal = {Springer Mathematical Neuroscience Series},
volume = {},
number = {},
pages = {},
year = {2014},
doi = {10.1007/978-3-642-54593-1_17},
url = {},
keywords = {}
}
@article{Wakeman2015,
author = {D.G. Wakeman} # and # rnah,
title = {A multi-subject, multi-modal human neuroimaging dataset},
journal = {Scientific Data},
volume = {2},
number = {150001},
pages = {},
year = {2015},
doi = {10.1038/sdata.2015.1},
url = {http://www.nature.com/articles/sdata20151},
keywords = {}
}
@InCollection{Flandin2015,
author = gf # and # karl,
editor = {Arthur W. Toga},
booktitle = {Brain Mapping: an Encyclopedic Reference},
title = {Topological Inference},
publisher = {Academic Press},
pages = {495--500},
year = {2015},
keywords = {FDR,RFT,topological},
doi = {10.1016/B978-0-12-397025-1.00322-5},
url = {http://www.sciencedirect.com/science/article/pii/B9780123970251003225}
}
@article{rsDCM2015,
author = {A. Razi} # and # {J. Kahan} # and # {G. Rees} # and # karl,
title = {Construct validation of {DCM} for resting state f{MRI}},
journal = ni,
volume = {106},
number = {},
pages = {1--14},
year = {2015},
doi = {10.1016/j.neuroimage.2014.11.027},
url = {http://www.sciencedirect.com/science/article/pii/S1053811914009446},
keywords = {DCM}
}
@article{stocDCM2011,
author = {Baojuan Li} # and # jean # and # klaas # and # will # and # {D. Hu} # and # karl,
title = {Generalised filtering and stochastic {DCM} for f{MRI}},
journal = ni,
volume = {58},
number = {2},
pages = {442--457},
year = {2011},
doi = {10.1016/j.neuroimage.2011.01.085},
url = {http://www.sciencedirect.com/science/article/pii/S1053811911001406},
keywords = {DCM}
}
@article{tak2015dynamic,
title = {Dynamic causal modelling for functional near-infrared spectroscopy},
author = {Sungho Tak} # and # {A.M. Kempny} # and # karl # and # {A.P. Leff} # and # will,
journal = ni,
volume = {111},
pages = {338--349},
year = {2015},
doi = {10.1016/j.neuroimage.2015.02.035},
url = {http://www.sciencedirect.com/science/article/pii/S1053811915001366}
}
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