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ijp-biop-run-macro/src/main/java/results/AnalysisResults.java
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AnalysisResults.java
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package results;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import net.imglib2.RandomAccessibleInterval;
import net.imglib2.type.numeric.RealType;
import net.imglib2.type.numeric.integer.LongType;
import algorithms.Histogram2D;
/**
* Data structure housing all colocalisation results. Intended for programmatic
* access via API calls.
*
* @author Curtis Rueden
*/
public class AnalysisResults<T extends RealType<T>> implements
ResultHandler<T>
{
/** Result images, no matter what specific kinds. */
private final List<NamedContainer<RandomAccessibleInterval<? extends RealType<?>>>> listOfImages =
new ArrayList<>();
/** Histogram results. */
private final Map<RandomAccessibleInterval<LongType>, Histogram2D<T>> mapOf2DHistograms =
new HashMap<>();
/** Warnings produced during analysis. */
private final List<Warning> warnings = new ArrayList<>();
/** Named values, collected from algorithms. */
private final List<ValueResult> valueResults = new ArrayList<>();
/**
* Images and corresponding LUTs. When an image is not in there no LUT should
* be applied.
*/
private final Map<Object, String> listOfLUTs = new HashMap<>();
// -- AllTheData methods --
public List<NamedContainer<RandomAccessibleInterval<? extends RealType<?>>>>
images()
{
return listOfImages;
}
public Map<RandomAccessibleInterval<LongType>, Histogram2D<T>> histograms() {
return mapOf2DHistograms;
}
public List<Warning> warnings() {
return warnings;
}
public List<ValueResult> values() {
return valueResults;
}
// -- ResultHandler methods --
@Override
public void handleImage(final RandomAccessibleInterval<T> image,
final String name)
{
listOfImages.add(
new NamedContainer<RandomAccessibleInterval<? extends RealType<?>>>(image,
name));
}
@Override
public void handleHistogram(final Histogram2D<T> histogram,
final String name)
{
listOfImages.add(
new NamedContainer<RandomAccessibleInterval<? extends RealType<?>>>(
histogram.getPlotImage(), name));
mapOf2DHistograms.put(histogram.getPlotImage(), histogram);
// link the histogram to a LUT
listOfLUTs.put(histogram.getPlotImage(), "Fire");
}
@Override
public void handleWarning(final Warning warning) {
warnings.add(warning);
}
@Override
public void handleValue(final String name, final String value) {
valueResults.add(new ValueResult(name, value));
}
@Override
public void handleValue(final String name, final double value) {
handleValue(name, value, 3);
}
@Override
public void handleValue(final String name, final double value,
final int decimals)
{
valueResults.add(new ValueResult(name, value, decimals));
}
@Override
public void process() {
// NB: No action needed.
}
}
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