Diffusion BIOP Run Macro (master) History

History
master7479ef73dd90be3417653c0…

May 3 2017

Organize imports
7479ef73dd90
·Curtis Rueden on May 3 2017, 20:21.
Fix a memory leak
b7f84a775050
·Curtis Rueden on May 3 2017, 20:21.
Coloc_2: remove old main method
acfe92317c3a
·Curtis Rueden on May 3 2017, 20:21.
Make SpearmanRankCorrelation not static
5230beb0482f
·Curtis Rueden on May 3 2017, 20:21.
Dispose the SingleWindowDisplay window on close
125146324f1a
·Curtis Rueden on May 3 2017, 20:21.
SingleWindowDisplay: do not keep list of displays
ad56fd31ad91
·Curtis Rueden on May 3 2017, 20:21.
Add a Groovy script to test programmatic execution
d9e552927c2f
·Curtis Rueden on May 3 2017, 20:21.
Coloc_2: split settings logic out of showDialog
ca1c74598c2a
·Ellen T Arena / Curtis Rueden on May 3 2017, 20:21.
Coloc_2: fix Eclipse warnings
9b46bccd3a2c
·Curtis Rueden on May 3 2017, 20:21.
Coloc_2: add support for headless operation
9962b762390a
·Curtis Rueden on May 3 2017, 20:21.
Coloc_2: return analysis results data structure
2db10aeef83a
·Curtis Rueden on May 3 2017, 18:16.
Coloc_2: add support for passing additional handlers
312b100b876a
·Curtis Rueden on May 3 2017, 18:16.
Coloc_2: clean up style
8a9515166dbb
·Curtis Rueden on May 3 2017, 18:16.

May 2 2017

Bump to next development cycle
a80151fb704e
·Curtis Rueden on May 2 2017, 17:28.

May 1 2017

Fix javadoc errors
b50b4e19fe21
·Curtis Rueden on May 1 2017, 19:39.

Apr 26 2017

Fix the Travis configuration
ea198795bf73
·Curtis Rueden on Apr 26 2017, 22:32.

Mar 27 2017

POM: remove obsolete comment
0bd4886a3023
·Curtis Rueden on Mar 27 2017, 19:30.

Mar 1 2017

Switch from Jenkins to Travis CI
23578a5bf302
·Curtis Rueden on Mar 1 2017, 16:58.

Feb 23 2017

Bump to next development cycle
03124461338a
·Curtis Rueden on Feb 23 2017, 17:46.
Fix EOF newline
9d4338b4dadc
·Curtis Rueden on Feb 23 2017, 17:43.
Add license blurbs and project license
2624bc49f8f0
·Curtis Rueden on Feb 23 2017, 17:43.
Update parent to org.scijava:pom-scijava:13.2.1
3f89d0882fe3
·Curtis Rueden on Feb 23 2017, 17:43.
POM: update project URL
e822cd2593d0
·Curtis Rueden on Feb 23 2017, 17:37.

Feb 2 2017

Merge branch 'results-order-cont'
829f2111bb00
·Ellen T Arena on Feb 2 2017, 22:46.
SingleWindowDisplay: hard code nice size
0109af85818a
·Ellen T Arena on Feb 2 2017, 22:44.
SingleWindowDisplay: split monster words
ce780990250b
·Ellen T Arena on Feb 2 2017, 22:15.
SingleWindowDisplay: be DRY with helper methods
93d940a50820
·Ellen T Arena on Feb 2 2017, 22:08.

Feb 1 2017

SingleWindowDisplay: rewrite one printTableRow method
3a3cdf765a8b
·Ellen T Arena on Feb 1 2017, 22:08.

Jan 30 2017

SingleWindowDisplay: wip
b3202d1f0cb8
·Ellen T Arena on Jan 30 2017, 23:23.

Jan 25 2017

SingleWindowDisplay: wip & remove unused printTableRow method
489548d3d135
·Ellen T Arena on Jan 25 2017, 21:41.

Jan 24 2017

SingleWindowDisplay: wip for wrapping text
66ce429808ac
·Ellen T Arena on Jan 24 2017, 22:21.
SingleWindowDisplay: move code for log warnings
036d1baaa4f2
·Ellen T Arena on Jan 24 2017, 22:11.
SingleWindowDisplay: Minor text edits
971f134cd4e2
·Ellen T Arena on Jan 24 2017, 20:58.

Jan 20 2017

SingleWindowDisplay: clean up formatting
12dd811ec239
·Ellen T Arena on Jan 20 2017, 21:24.
SingleWindowDisplay: add warnings to log window
95dbe40117dd
·Ellen T Arena on Jan 20 2017, 21:05.

Jan 19 2017

Merge branch 'results-order'
0cf613ce9f7c
·Ellen T Arena on Jan 19 2017, 23:23.
PDFWriter: create separate list for warnings
6da058542bb8
·Ellen T Arena on Jan 19 2017, 23:14.

Jan 18 2017

PDFWriter: delete code for IJ.log call
fd8153e521a4
·Ellen T Arena on Jan 18 2017, 21:21.

Jan 10 2017

DataContainer: Remove unnecessary comments.
e53a417dc41c
·Ellen T Arena on Jan 10 2017, 21:23.

Jan 9 2017

MandersColocalization: Add new labels
6926bce5c3f8
·Ellen T Arena on Jan 9 2017, 17:56.

Jan 5 2017

Merge branch 'results-mask'
7b8f88034743
·Ellen T Arena on Jan 5 2017, 21:26.
INputCheck: retrieve MaskType labels for results
7fc6b27c462f
·Ellen T Arena on Jan 5 2017, 21:20.
DataContainer: Add String labels for MaskType
f63cf8a2752b
·Ellen T Arena on Jan 5 2017, 21:16.

Jan 4 2017

DataContainer: Add String field for mask name
b8ba2a7c5a1c
·Ellen T Arena on Jan 4 2017, 21:27.

Dec 29 2016

Merge branch 'zstack-display'
bb594517a1df
·Ellen T Arena on Dec 29 2016, 18:49.
Coloc_2: Maximum projection displayed
995481554f28
·Ellen T Arena on Dec 29 2016, 18:42.

Dec 28 2016

Main: Add z-stack sample for testing
580d1e0fd6fa
·Ellen T Arena on Dec 28 2016, 22:12.

Dec 27 2016

SingleWindowDisplay: Improve label display
79bad29c15c6
·Ellen T Arena on Dec 27 2016, 21:23.
Merge branch 'label-axes'
3137ddcdb388
·Ellen T Arena on Dec 27 2016, 21:03.
SingleWindowDisplay: Put channel names in ()
4bf7e4ba2fcf
·Ellen T Arena on Dec 27 2016, 20:55.
DataContainer: Add getters for original names
fe79246e2fd2
·Ellen T Arena on Dec 27 2016, 20:55.
DataContainer: Refactor source image names
8e837921b561
·Ellen T Arena on Dec 27 2016, 20:55.
DataContainer: make fields private
17c03c3a5290
·Ellen T Arena on Dec 27 2016, 20:55.
SingleWindowDisplay: Add axis labels
d6f1c1def26e
·Ellen T Arena on Dec 27 2016, 20:55.
SingleWindowDisplay: Organize imports
beea532daf67
·Ellen T Arena on Dec 27 2016, 20:53.

Dec 1 2016

Fix typos for parameters in method headers
fdc9fc2cec25
·Ellen T Arena on Dec 1 2016, 20:54.
Minor edits to comments
a031d77525ad
·Ellen T Arena on Dec 1 2016, 20:38.
Add main method for debugging Coloc 2
f9759add59da
·Ellen T Arena on Dec 1 2016, 20:25.
Fix typos
f8ceb6b25336
·Ellen T Arena on Dec 1 2016, 15:32.

Nov 22 2016

Merge pull request #49 from mpicbg-scicomp/master
509b2f039810
·dan white / GitHub on Nov 22 2016, 15:17.

Nov 20 2016

tidy and clarify input check warnings
27fb4200b19c
·dan white / GitHub on Nov 20 2016, 19:58.
Clarify input data warning messages
80d4c6ca1d7c
·dan white / GitHub on Nov 20 2016, 19:52.

Nov 15 2016

prevented accessing the 2D histogram out of range. The number of these access…
22ae47d7a5d7
·haesleinhuepf on Nov 15 2016, 11:43.
Added an input check looking for negative minimum grey values
22c1bfb28f86
·haesleinhuepf on Nov 15 2016, 11:42.

Jun 16 2016

Bump to next development cycle
a697f5737f3a
·Curtis Rueden on Jun 16 2016, 17:21.
Merge pull request #47 from imagejan/patch-1
2955d4b641d2
·Curtis Rueden / GitHub on Jun 16 2016, 17:19.
Fix dialog parameters to avoid duplicate keywords
eeeac032f95a
·eglinger / GitHub on Jun 16 2016, 17:00.

Jun 9 2016

POM: goodbye Mark!
5eed56b404ab
·Curtis Rueden on Jun 9 2016, 23:23.

May 4 2016

POM: remove timezones
4d0f70d42011
·Curtis Rueden on May 4 2016, 20:23.

Apr 20 2016

POM: use imagej.net URLs for all developers
e6a575224508
·Curtis Rueden on Apr 20 2016, 19:01.
POM: remove developer email addresses
a9e75dc97a21
·Curtis Rueden on Apr 20 2016, 18:59.

Dec 24 2015

POM: tidy up order of configuration blocks
ae38bfc1a052
·Curtis Rueden on Dec 24 2015, 04:27.
POM: update developers and contributors
d4a2f12857d8
·Curtis Rueden on Dec 24 2015, 04:27.

Oct 17 2015

Bump to next development cycle
81d07d20dad5
·Curtis Rueden on Oct 17 2015, 04:22.
Bump pom-fiji parent to 16.0.0
b6a5caccf257
·Curtis Rueden on Oct 17 2015, 04:20.

Sep 21 2015

Merge pull request #44 from chalkie666/fixIssue33
9fbe5594f6cb
·dan white on Sep 21 2015, 11:20.

Sep 19 2015

Make Coloc_Job_Name value result
ca6cb3e65fa9
·daniel j. white on Sep 19 2015, 12:36.

Sep 18 2015

Merge pull request #43 from chalkie666/fixIssue33
9db515eff9b3
·Tom Kazimiers on Sep 18 2015, 15:36.

Sep 2 2015

Bump to next development cycle
c4c4038bcdba
·Mark Hiner on Sep 2 2015, 19:12.
Bump parent to pom-fiji 15.1.0
4ca9d1838ef9
·Mark Hiner on Sep 2 2015, 19:10.
Results: Set jobName result value to Done instead of -1
2094186244da
·daniel j. white on Sep 2 2015, 15:31.
Results: Allow ResultsHandlers to get mask type and ID
0d148e5e355e
·daniel j. white on Sep 2 2015, 15:31.
Results: Fix typo in DataContainer
779cb1c69fa7
·daniel j. white on Sep 2 2015, 15:24.
Results: issue #33, channel name in image name for results.
897fd4b354f2
·daniel j. white on Sep 2 2015, 15:21.

Aug 31 2015

Merge branch 'MandersRealNoisyTest'
2271115b0bc1
·Curtis Rueden on Aug 31 2015, 21:11.
Revert "Merge branch 'manders-real-noisy-test'"
3dfb0a22c55d
·Curtis Rueden on Aug 31 2015, 21:07.

Aug 30 2015

Use Eclipse to find and add missing @Override annotations
a06fdea26f35
·daniel j. white on Aug 30 2015, 16:05.
change IJ.write to IJ.log
7f32ca9bdf50
·daniel j. white on Aug 30 2015, 16:05.
add project url and issue management system info
d9be7873e104
·daniel j. white on Aug 30 2015, 16:05.
Fix comments and comments formatting and names
79a72adc5c33
·daniel j. white on Aug 30 2015, 16:05.
remove unused imports
dcec3ea94c80
·daniel j. white on Aug 30 2015, 16:05.
A second unit test for Manders' coefficients
5610ed689846
·daniel j. white on Aug 30 2015, 16:04.
PDFWriter file name: uses maskHash so remove "mask"
f83fb54e445e
·daniel j. white on Aug 30 2015, 16:04.
use a job name with the mask hash for results naming
fc2457b0af79
·daniel j. white on Aug 30 2015, 15:49.
write coloc job name at top of PDF output
d2734712c33c
·daniel j. white on Aug 30 2015, 15:49.
Coloc jobName; a ValueResult for use in ResultHandler implementations
4afd70fd2b78
·daniel j. white on Aug 30 2015, 15:49.
Remove old stale comments and fix comment typo
83bee3b0d009
·daniel j. white on Aug 30 2015, 15:49.
use same job name in all ResultHandlers
a7dafc9e9781
·daniel j. white on Aug 30 2015, 15:49.
Add main class to make development easier
43e1393cf017
·Tom Kazimiers / daniel j. white on Aug 30 2015, 15:49.
change autothreshold test to y-intercept:ch2Mean
c81b5edff10e
·daniel j. white on Aug 30 2015, 15:49.

Historymaster7479ef73dd90be3417653c0…

May 3 2017

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History
master7479ef73dd90be3417653c0…