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bond_fene_expand.html
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Sat, Nov 23, 11:39
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rLAMMPS lammps
bond_fene_expand.html
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<HTML>
<CENTER><A
HREF =
"http://lammps.sandia.gov"
>
LAMMPS WWW Site
</A>
-
<A
HREF =
"Manual.html"
>
LAMMPS Documentation
</A>
-
<A
HREF =
"Section_commands.html#comm"
>
LAMMPS Commands
</A>
</CENTER>
<HR>
<H3>
bond_style fene/expand command
</H3>
<P><B>
Syntax:
</B>
</P>
<PRE>
bond_style fene/expand
</PRE>
<P><B>
Examples:
</B>
</P>
<PRE>
bond_style fene/expand
bond_coeff 1 30.0 1.5 1.0 1.0 0.5
</PRE>
<P><B>
Description:
</B>
</P>
<P>
The
<I>
fene/expand
</I>
bond style uses the potential
</P>
<CENTER><IMG
SRC =
"Eqs/bond_fene_expand.jpg"
>
</CENTER>
<P>
to define a finite extensible nonlinear elastic (FENE) potential
<A
HREF =
"#Kremer"
>
(Kremer)
</A>
, used for bead-spring polymer models. The first
term is attractive, the 2nd Lennard-Jones term is repulsive.
</P>
<P>
The
<I>
fene/expand
</I>
bond style is similar to
<I>
fene
</I>
except that an extra
shift factor of delta (positive or negative) is added to
<I>
r
</I>
to
effectively change the bead size of the bonded atoms. The first term
now extends to R0 + delta and the 2nd term is cutoff at 2^(1/6) sigma
+ delta.
</P>
<P>
The following coefficients must be defined for each bond type via the
<A
HREF =
"bond_coeff.html"
>
bond_coeff
</A>
command as in the example above, or in
the data file or restart files read by the
<A
HREF =
"read_data.html"
>
read_data
</A>
or
<A
HREF =
"read_restart.html"
>
read_restart
</A>
commands:
</P>
<UL><LI>
K (energy/distance^2)
<LI>
R0 (distance)
<LI>
epsilon (energy)
<LI>
sigma (distance)
<LI>
delta (distance)
</UL>
<P><B>
Restrictions:
</B>
none
</P>
<P><B>
Related commands:
</B>
</P>
<P><A
HREF =
"bond_coeff.html"
>
bond_coeff
</A>
,
<A
HREF =
"delete_bonds.html"
>
delete_bonds
</A>
</P>
<P><B>
Default:
</B>
none
</P>
<HR>
<A
NAME =
"Kremer"
></A>
<P><B>
(Kremer)
</B>
Kremer, Grest, J Chem Phys, 92, 5057 (1990).
</P>
</HTML>
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